HEADER BIOSYNTHETIC PROTEIN 29-AUG-17 5Y9Y TITLE CRYSTAL STRUCTURE OF THE KDO HYDROXYLASE KDOO, A NON-HEME FE(II) TITLE 2 ALPHAKETOGLUTARATE DEPENDENT DIOXYGENASE IN COMPLEX WITH SUCCINATE TITLE 3 AND CO(II) COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN KDOO; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 3-DEOXY-D-MANNO-OCT-2-ULOSONIC ACID HYDROXYLASE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHYLACIDIPHILUM INFERNORUM; SOURCE 3 ORGANISM_COMMON: ISOLATE V4; SOURCE 4 ORGANISM_TAXID: 481448; SOURCE 5 GENE: MINF_1012; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS FE(II)/O2/ALPHAKETOGLUTARATE DEPENDENT DIOXYGENASE, KDO2-LIPID A KEYWDS 2 DIOXYGENASE, DEOXYSUGAR DIOXYGENASE, LPS BIOSYNTHESIS, BIOSYNTHETIC KEYWDS 3 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR H.S.CHUNG,C.W.PEMBLE,S.H.JOO,C.R.RAETZ REVDAT 2 27-MAR-24 5Y9Y 1 LINK REVDAT 1 31-OCT-18 5Y9Y 0 JRNL AUTH H.S.CHUNG,C.W.PEMBLE IV,S.H.JOO JRNL TITL BIOCHEMICAL AND STRUCTURAL INSIGHTS OF JRNL TITL 2 FE(II)/ALPHA-KETOGLUTARATE/O2-DEPENDENT DIOXYGENASE, KDOO JRNL TITL 3 FROM METHYLACIDIPHILUM INFERNORUM V4 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.57 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 3 NUMBER OF REFLECTIONS : 40173 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.161 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.194 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2010 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 23.5675 - 3.8482 0.98 3045 159 0.1610 0.1924 REMARK 3 2 3.8482 - 3.0565 0.99 2931 153 0.1480 0.1854 REMARK 3 3 3.0565 - 2.6708 0.99 2905 152 0.1700 0.1880 REMARK 3 4 2.6708 - 2.4268 1.00 2900 153 0.1590 0.2093 REMARK 3 5 2.4268 - 2.2531 0.99 2893 153 0.1586 0.2005 REMARK 3 6 2.2531 - 2.1203 0.99 2855 148 0.1559 0.1874 REMARK 3 7 2.1203 - 2.0142 0.99 2828 148 0.1549 0.1857 REMARK 3 8 2.0142 - 1.9265 0.97 2792 148 0.1569 0.2052 REMARK 3 9 1.9265 - 1.8524 0.96 2737 146 0.1602 0.1954 REMARK 3 10 1.8524 - 1.7885 0.94 2702 138 0.1596 0.1980 REMARK 3 11 1.7885 - 1.7326 0.92 2630 137 0.1638 0.1947 REMARK 3 12 1.7326 - 1.6831 0.89 2550 133 0.1677 0.1953 REMARK 3 13 1.6831 - 1.6388 0.83 2356 126 0.1779 0.2046 REMARK 3 14 1.6388 - 1.5988 0.72 2039 116 0.1699 0.1959 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.050 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.29 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2561 REMARK 3 ANGLE : 0.964 3453 REMARK 3 CHIRALITY : 0.057 367 REMARK 3 PLANARITY : 0.006 443 REMARK 3 DIHEDRAL : 16.486 1549 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 11 THROUGH 127 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.7659 3.2576 6.3373 REMARK 3 T TENSOR REMARK 3 T11: 0.0961 T22: 0.1257 REMARK 3 T33: 0.1256 T12: 0.0028 REMARK 3 T13: 0.0111 T23: 0.0087 REMARK 3 L TENSOR REMARK 3 L11: 1.7311 L22: 2.4405 REMARK 3 L33: 2.3503 L12: -0.3579 REMARK 3 L13: 0.7189 L23: -0.4571 REMARK 3 S TENSOR REMARK 3 S11: 0.0024 S12: 0.1467 S13: 0.1024 REMARK 3 S21: -0.1708 S22: -0.0286 S23: 0.1319 REMARK 3 S31: -0.1051 S32: -0.0310 S33: 0.0230 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 128 THROUGH 150 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.5297 -4.3076 17.4830 REMARK 3 T TENSOR REMARK 3 T11: 0.2163 T22: 0.2807 REMARK 3 T33: 0.4044 T12: 0.0032 REMARK 3 T13: -0.0268 T23: -0.0038 REMARK 3 L TENSOR REMARK 3 L11: 0.5265 L22: 0.4463 REMARK 3 L33: 2.4184 L12: 0.1743 REMARK 3 L13: 0.0404 L23: -0.1876 REMARK 3 S TENSOR REMARK 3 S11: 0.0336 S12: -0.0424 S13: -0.0353 REMARK 3 S21: 0.0307 S22: 0.0337 S23: 1.0803 REMARK 3 S31: 0.0771 S32: -0.7103 S33: -0.1694 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 151 THROUGH 286 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.1206 -9.8237 17.3274 REMARK 3 T TENSOR REMARK 3 T11: 0.0835 T22: 0.1027 REMARK 3 T33: 0.0824 T12: 0.0019 REMARK 3 T13: 0.0005 T23: 0.0008 REMARK 3 L TENSOR REMARK 3 L11: 0.6899 L22: 1.6830 REMARK 3 L33: 0.9584 L12: 0.1604 REMARK 3 L13: 0.0954 L23: -0.1633 REMARK 3 S TENSOR REMARK 3 S11: 0.0546 S12: -0.0339 S13: -0.0079 REMARK 3 S21: 0.0447 S22: -0.0334 S23: 0.0974 REMARK 3 S31: 0.0838 S32: -0.0732 S33: -0.0114 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 287 THROUGH 307 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.0651 -25.5151 16.0806 REMARK 3 T TENSOR REMARK 3 T11: 0.3542 T22: 0.2201 REMARK 3 T33: 0.2091 T12: 0.0599 REMARK 3 T13: 0.0523 T23: -0.0040 REMARK 3 L TENSOR REMARK 3 L11: 2.8273 L22: 2.8483 REMARK 3 L33: 2.1999 L12: -1.2430 REMARK 3 L13: -0.6463 L23: 1.7612 REMARK 3 S TENSOR REMARK 3 S11: 0.1058 S12: 0.2778 S13: -0.3385 REMARK 3 S21: -0.4980 S22: -0.0721 S23: -0.5116 REMARK 3 S31: 0.5505 S32: 0.3620 S33: 0.0044 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5Y9Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-AUG-17. REMARK 100 THE DEPOSITION ID IS D_1300004910. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-JUL-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40240 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : 0.07800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 70.6 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : 0.27700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM ACETATE (PH 4.5), 200MM REMARK 280 LITHIUM SULFATE, 50% V/V PEG 400, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 288K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.88100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.21450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.65800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.21450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.88100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 29.65800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PHE A 2 REMARK 465 PRO A 3 REMARK 465 MET A 4 REMARK 465 ASP A 5 REMARK 465 THR A 6 REMARK 465 LYS A 7 REMARK 465 THR A 8 REMARK 465 ASN A 9 REMARK 465 GLU A 10 REMARK 465 ALA A 308 REMARK 465 ALA A 309 REMARK 465 ALA A 310 REMARK 465 LEU A 311 REMARK 465 GLU A 312 REMARK 465 HIS A 313 REMARK 465 HIS A 314 REMARK 465 HIS A 315 REMARK 465 HIS A 316 REMARK 465 HIS A 317 REMARK 465 HIS A 318 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 32 O HOH A 501 1.16 REMARK 500 OE2 GLU A 233 O HOH A 502 2.09 REMARK 500 O HOH A 503 O HOH A 627 2.11 REMARK 500 O HOH A 548 O HOH A 700 2.12 REMARK 500 OD1 ASN A 49 O HOH A 503 2.13 REMARK 500 O HOH A 600 O HOH A 665 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 68 -159.39 -122.20 REMARK 500 ALA A 122 -142.35 -125.37 REMARK 500 PHE A 267 93.52 82.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PG4 A 404 REMARK 610 PG4 A 405 REMARK 610 PG4 A 406 REMARK 610 PG4 A 407 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 401 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 146 NE2 REMARK 620 2 ASP A 148 OD1 94.5 REMARK 620 3 HIS A 260 NE2 90.2 93.7 REMARK 620 4 SIN A 402 C1 116.4 147.0 97.4 REMARK 620 5 SIN A 402 O2 88.4 173.8 91.8 28.7 REMARK 620 6 SIN A 402 O1 144.7 118.4 99.6 29.0 57.7 REMARK 620 7 HOH A 643 O 88.1 84.7 177.6 84.9 89.9 82.8 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CO A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SIN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG4 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG4 A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG4 A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG4 A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG4 A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 411 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 412 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 413 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 414 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 415 DBREF 5Y9Y A 1 305 UNP B3DUR4 B3DUR4_METI4 1 305 SEQADV 5Y9Y LYS A 306 UNP B3DUR4 EXPRESSION TAG SEQADV 5Y9Y LEU A 307 UNP B3DUR4 EXPRESSION TAG SEQADV 5Y9Y ALA A 308 UNP B3DUR4 EXPRESSION TAG SEQADV 5Y9Y ALA A 309 UNP B3DUR4 EXPRESSION TAG SEQADV 5Y9Y ALA A 310 UNP B3DUR4 EXPRESSION TAG SEQADV 5Y9Y LEU A 311 UNP B3DUR4 EXPRESSION TAG SEQADV 5Y9Y GLU A 312 UNP B3DUR4 EXPRESSION TAG SEQADV 5Y9Y HIS A 313 UNP B3DUR4 EXPRESSION TAG SEQADV 5Y9Y HIS A 314 UNP B3DUR4 EXPRESSION TAG SEQADV 5Y9Y HIS A 315 UNP B3DUR4 EXPRESSION TAG SEQADV 5Y9Y HIS A 316 UNP B3DUR4 EXPRESSION TAG SEQADV 5Y9Y HIS A 317 UNP B3DUR4 EXPRESSION TAG SEQADV 5Y9Y HIS A 318 UNP B3DUR4 EXPRESSION TAG SEQRES 1 A 318 MET PHE PRO MET ASP THR LYS THR ASN GLU GLN PRO ILE SEQRES 2 A 318 ILE GLN PHE ASP ALA GLU SER TRP GLU ALA GLU PHE THR SEQRES 3 A 318 GLN GLU ILE GLN ASP LYS ALA ILE GLU GLY LEU GLU SER SEQRES 4 A 318 GLY SER VAL LEU PHE PHE PRO LYS LEU ASN PHE PRO LEU SEQRES 5 A 318 LEU THR GLU GLU LEU LYS PHE LEU ASP PRO THR TRP VAL SEQRES 6 A 318 SER GLY ALA LYS ASN ILE SER TYR ASP PRO ARG SER ALA SEQRES 7 A 318 THR LEU LYS GLY VAL GLU GLY LYS SER GLU ASP LEU ARG SEQRES 8 A 318 LEU LEU SER GLY LEU LEU LYS ARG TYR ALA GLU LYS THR SEQRES 9 A 318 ALA ALA PHE LEU HIS LEU LEU PHE PRO PHE TYR GLY SER SEQRES 10 A 318 SER LEU LYS ILE ALA ARG THR SER PHE ARG PRO VAL GLU SEQRES 11 A 318 ILE SER GLY ARG ALA THR SER ALA ARG LYS ASP ASP THR SEQRES 12 A 318 ARG LEU HIS VAL ASP ALA PHE PRO SER SER PRO THR GLY SEQRES 13 A 318 GLY GLU ARG ILE LEU ARG VAL PHE SER ASN ILE ASN PRO SEQRES 14 A 318 GLN GLY LYS PRO ARG SER TRP ARG ILE GLY GLU PRO PHE SEQRES 15 A 318 GLN ASN TYR LEU ASN HIS LEU LEU PRO GLN LEU SER PRO SEQRES 16 A 318 PRO ALA PRO GLY LYS ARG PHE LEU LEU TYR LEU PHE GLY SEQRES 17 A 318 ILE THR LYS GLY TYR ARG SER LEU TYR ASP HIS TYR MET SEQRES 18 A 318 LEU GLU LEU HIS ASP LYS GLY LYS LEU ASP LEU GLU TYR SEQRES 19 A 318 GLN LYS ASN SER PRO GLN VAL ALA PHE ASP PHE PRO ALA SEQRES 20 A 318 GLY SER THR TRP ILE VAL PHE THR ASP GLN VAL LEU HIS SEQRES 21 A 318 ALA VAL ASP LYS GLY GLN PHE LEU LEU GLU GLN THR PHE SEQRES 22 A 318 HIS LEU LYS VAL ASN ALA LEU LYS HIS PRO GLU LYS SER SEQRES 23 A 318 PRO LEU LYS LEU LEU GLU THR ALA LEU ASN LYS LYS LEU SEQRES 24 A 318 VAL SER SER GLU SER PHE LYS LEU ALA ALA ALA LEU GLU SEQRES 25 A 318 HIS HIS HIS HIS HIS HIS HET CO A 401 1 HET SIN A 402 8 HET GOL A 403 6 HET PG4 A 404 10 HET PG4 A 405 7 HET PG4 A 406 4 HET PG4 A 407 4 HET PG4 A 408 13 HET ACT A 409 4 HET ACT A 410 4 HET ACT A 411 4 HET ACT A 412 4 HET SO4 A 413 5 HET SO4 A 414 5 HET CL A 415 1 HETNAM CO COBALT (II) ION HETNAM SIN SUCCINIC ACID HETNAM GOL GLYCEROL HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM ACT ACETATE ION HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 CO CO 2+ FORMUL 3 SIN C4 H6 O4 FORMUL 4 GOL C3 H8 O3 FORMUL 5 PG4 5(C8 H18 O5) FORMUL 10 ACT 4(C2 H3 O2 1-) FORMUL 14 SO4 2(O4 S 2-) FORMUL 16 CL CL 1- FORMUL 17 HOH *246(H2 O) HELIX 1 AA1 THR A 26 SER A 39 1 14 HELIX 2 AA2 LEU A 53 LEU A 60 5 8 HELIX 3 AA3 ASP A 61 VAL A 65 5 5 HELIX 4 AA4 LYS A 86 PHE A 112 1 27 HELIX 5 AA5 PRO A 113 LEU A 119 5 7 HELIX 6 AA6 GLU A 130 ARG A 134 5 5 HELIX 7 AA7 SER A 137 ASP A 141 5 5 HELIX 8 AA8 PRO A 181 LEU A 190 1 10 HELIX 9 AA9 PRO A 191 LEU A 193 5 3 HELIX 10 AB1 GLY A 199 PHE A 207 1 9 HELIX 11 AB2 SER A 215 ASP A 231 1 17 HELIX 12 AB3 ASP A 231 SER A 238 1 8 HELIX 13 AB4 LYS A 276 LEU A 280 5 5 HELIX 14 AB5 HIS A 282 LYS A 285 5 4 HELIX 15 AB6 SER A 286 ASN A 296 1 11 SHEET 1 AA1 8 ILE A 13 GLN A 15 0 SHEET 2 AA1 8 VAL A 42 PHE A 45 1 O PHE A 44 N ILE A 14 SHEET 3 AA1 8 THR A 250 PHE A 254 -1 O THR A 250 N PHE A 45 SHEET 4 AA1 8 ARG A 159 ASN A 166 -1 N PHE A 164 O TRP A 251 SHEET 5 AA1 8 LEU A 268 LEU A 275 -1 O LEU A 275 N ARG A 159 SHEET 6 AA1 8 LYS A 120 ARG A 127 -1 N SER A 125 O GLU A 270 SHEET 7 AA1 8 ILE A 71 ASP A 74 -1 N TYR A 73 O THR A 124 SHEET 8 AA1 8 THR A 79 LYS A 81 -1 O LYS A 81 N SER A 72 SHEET 1 AA2 3 VAL A 241 PHE A 245 0 SHEET 2 AA2 3 ARG A 174 ILE A 178 -1 N ARG A 174 O PHE A 245 SHEET 3 AA2 3 HIS A 260 LYS A 264 -1 O ASP A 263 N SER A 175 LINK NE2 HIS A 146 CO CO A 401 1555 1555 2.13 LINK OD1 ASP A 148 CO CO A 401 1555 1555 2.10 LINK NE2 HIS A 260 CO CO A 401 1555 1555 2.13 LINK CO CO A 401 C1 SIN A 402 1555 1555 2.58 LINK CO CO A 401 O2 SIN A 402 1555 1555 2.32 LINK CO CO A 401 O1 SIN A 402 1555 1555 2.15 LINK CO CO A 401 O HOH A 643 1555 1555 2.27 SITE 1 AC1 5 HIS A 146 ASP A 148 HIS A 260 SIN A 402 SITE 2 AC1 5 HOH A 643 SITE 1 AC2 12 ASP A 142 HIS A 146 ASP A 148 ARG A 174 SITE 2 AC2 12 TRP A 176 HIS A 260 VAL A 262 CO A 401 SITE 3 AC2 12 ACT A 412 HOH A 507 HOH A 543 HOH A 643 SITE 1 AC3 9 PRO A 12 GLY A 40 GLY A 179 GLU A 180 SITE 2 AC3 9 VAL A 258 LEU A 259 HOH A 582 HOH A 587 SITE 3 AC3 9 HOH A 675 SITE 1 AC4 6 ILE A 178 GLY A 179 TYR A 220 VAL A 241 SITE 2 AC4 6 LEU A 295 HOH A 624 SITE 1 AC5 3 ALA A 106 PHE A 202 HOH A 505 SITE 1 AC6 2 LYS A 200 ARG A 214 SITE 1 AC7 5 SER A 153 PRO A 154 THR A 155 HIS A 274 SITE 2 AC7 5 SO4 A 414 SITE 1 AC8 4 PRO A 154 TYR A 205 GLY A 212 TYR A 213 SITE 1 AC9 2 LYS A 264 HOH A 628 SITE 1 AD1 3 ASN A 296 HOH A 504 HOH A 540 SITE 1 AD2 2 HOH A 511 HOH A 512 SITE 1 AD3 4 ARG A 127 PHE A 150 ARG A 162 SIN A 402 SITE 1 AD4 5 THR A 79 LYS A 276 ASN A 278 SER A 304 SITE 2 AD4 5 HOH A 655 SITE 1 AD5 3 ARG A 76 HIS A 274 PG4 A 407 SITE 1 AD6 6 PHE A 16 ASP A 17 LYS A 32 HOH A 501 SITE 2 AD6 6 HOH A 663 HOH A 709 CRYST1 45.762 59.316 116.429 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021852 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016859 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008589 0.00000