HEADER HYDROLASE 31-AUG-17 5YAA TITLE CRYSTAL STRUCTURE OF MARF1 NYN DOMAIN FROM MUS MUSCULUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: MEIOSIS REGULATOR AND MRNA STABILITY FACTOR 1; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: NYN DOMAIN, UNP RESIDUES 337-499; COMPND 5 SYNONYM: LIMKAIN-B1,MEIOSIS ARREST FEMALE PROTEIN 1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: MARF1, KIAA0430, LKAP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NYN DOMAIN, MARF1, MEIOSIS, NUCLEASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Q.Q.YAO,B.X.WU,J.B.MA REVDAT 2 14-NOV-18 5YAA 1 JRNL REVDAT 1 03-OCT-18 5YAA 0 JRNL AUTH Q.YAO,G.CAO,M.LI,B.WU,X.ZHANG,T.ZHANG,J.GUO,H.YIN,L.SHI, JRNL AUTH 2 J.CHEN,X.YU,L.ZHENG,J.MA,Y.Q.SU JRNL TITL RIBONUCLEASE ACTIVITY OF MARF1 CONTROLS OOCYTE RNA JRNL TITL 2 HOMEOSTASIS AND GENOME INTEGRITY IN MICE. JRNL REF PROC. NATL. ACAD. SCI. V. 115 11250 2018 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 30333187 JRNL DOI 10.1073/PNAS.1809744115 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.94 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.970 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 56259 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.235 REMARK 3 R VALUE (WORKING SET) : 0.232 REMARK 3 FREE R VALUE : 0.283 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 2859 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.9453 - 4.7444 0.99 2645 152 0.2244 0.2414 REMARK 3 2 4.7444 - 3.7682 1.00 2663 148 0.2028 0.2245 REMARK 3 3 3.7682 - 3.2925 1.00 2665 151 0.2252 0.2651 REMARK 3 4 3.2925 - 2.9918 1.00 2671 145 0.2363 0.3180 REMARK 3 5 2.9918 - 2.7775 1.00 2692 128 0.2468 0.3078 REMARK 3 6 2.7775 - 2.6138 1.00 2654 147 0.2401 0.3341 REMARK 3 7 2.6138 - 2.4830 1.00 2675 148 0.2406 0.2846 REMARK 3 8 2.4830 - 2.3750 1.00 2664 157 0.2492 0.3176 REMARK 3 9 2.3750 - 2.2836 1.00 2683 144 0.2393 0.2962 REMARK 3 10 2.2836 - 2.2048 1.00 2687 109 0.2281 0.2772 REMARK 3 11 2.2048 - 2.1359 1.00 2661 149 0.2265 0.3017 REMARK 3 12 2.1359 - 2.0748 1.00 2665 137 0.2273 0.2907 REMARK 3 13 2.0748 - 2.0202 1.00 2710 128 0.2282 0.3015 REMARK 3 14 2.0202 - 1.9710 1.00 2684 157 0.2305 0.2556 REMARK 3 15 1.9710 - 1.9262 1.00 2606 164 0.2376 0.3210 REMARK 3 16 1.9262 - 1.8852 1.00 2715 126 0.2406 0.3219 REMARK 3 17 1.8852 - 1.8475 1.00 2701 126 0.2435 0.2760 REMARK 3 18 1.8475 - 1.8126 1.00 2629 148 0.2498 0.3218 REMARK 3 19 1.8126 - 1.7802 1.00 2690 149 0.2672 0.2992 REMARK 3 20 1.7802 - 1.7501 1.00 2640 146 0.2810 0.3329 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.120 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 4947 REMARK 3 ANGLE : 1.064 6675 REMARK 3 CHIRALITY : 0.064 756 REMARK 3 PLANARITY : 0.006 870 REMARK 3 DIHEDRAL : 18.278 2980 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5YAA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-SEP-17. REMARK 100 THE DEPOSITION ID IS D_1300004943. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-NOV-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97916 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56376 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 81.740 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 2.1520 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M LI2SO4, 0.1M TRIS-HCL PH 8.5, 22% REMARK 280 PEG3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 81.73500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 47.18972 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 18.71700 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 81.73500 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 47.18972 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 18.71700 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 81.73500 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 47.18972 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 18.71700 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 94.37945 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 37.43400 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 94.37945 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 37.43400 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 94.37945 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 37.43400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7730 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7720 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7720 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 158 REMARK 465 GLU A 159 REMARK 465 VAL A 160 REMARK 465 ALA A 161 REMARK 465 VAL A 162 REMARK 465 THR A 163 REMARK 465 GLY A 164 REMARK 465 GLN A 165 REMARK 465 VAL A 166 REMARK 465 LEU A 167 REMARK 465 GLU A 168 REMARK 465 LEU A 319 REMARK 465 PRO A 320 REMARK 465 PRO B 158 REMARK 465 GLU B 159 REMARK 465 VAL B 160 REMARK 465 ALA B 161 REMARK 465 VAL B 162 REMARK 465 THR B 163 REMARK 465 GLY B 164 REMARK 465 GLN B 165 REMARK 465 VAL B 166 REMARK 465 LEU B 167 REMARK 465 GLU B 168 REMARK 465 LEU B 319 REMARK 465 PRO B 320 REMARK 465 PRO C 158 REMARK 465 GLU C 159 REMARK 465 VAL C 160 REMARK 465 ALA C 161 REMARK 465 VAL C 162 REMARK 465 THR C 163 REMARK 465 GLY C 164 REMARK 465 GLN C 165 REMARK 465 VAL C 166 REMARK 465 LEU C 167 REMARK 465 GLU C 168 REMARK 465 THR C 169 REMARK 465 LEU C 319 REMARK 465 PRO C 320 REMARK 465 PRO D 158 REMARK 465 GLU D 159 REMARK 465 VAL D 160 REMARK 465 ALA D 161 REMARK 465 VAL D 162 REMARK 465 THR D 163 REMARK 465 GLY D 164 REMARK 465 GLN D 165 REMARK 465 VAL D 166 REMARK 465 LEU D 167 REMARK 465 GLU D 168 REMARK 465 ASP D 318 REMARK 465 LEU D 319 REMARK 465 PRO D 320 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 546 O HOH B 551 1.93 REMARK 500 NZ LYS D 200 O HOH D 501 1.96 REMARK 500 NH1 ARG D 188 O ILE D 316 1.97 REMARK 500 O HOH D 523 O HOH D 558 1.97 REMARK 500 OE2 GLU A 300 O HOH A 501 1.98 REMARK 500 O HOH C 541 O HOH C 563 2.02 REMARK 500 O ILE C 290 O HOH C 501 2.02 REMARK 500 O HOH D 519 O HOH D 542 2.03 REMARK 500 O1 GOL A 403 O3 GOL C 406 2.03 REMARK 500 OD2 ASP B 318 O HOH B 501 2.04 REMARK 500 O HOH B 547 O HOH B 559 2.08 REMARK 500 O2 GOL A 402 O HOH A 502 2.11 REMARK 500 OE2 GLU D 278 O HOH D 502 2.14 REMARK 500 O HOH A 508 O HOH A 512 2.18 REMARK 500 NZ LYS A 242 OD2 ASP A 247 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH1 ARG B 311 O1 GOL D 401 3555 2.04 REMARK 500 OE2 GLU A 278 NH2 ARG C 250 1554 2.08 REMARK 500 O HOH B 502 O HOH C 552 5444 2.16 REMARK 500 O HOH C 555 O HOH D 546 8544 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 242 -127.07 38.34 REMARK 500 GLN A 297 37.45 77.19 REMARK 500 CYS B 182 75.52 -105.23 REMARK 500 ASN B 296 5.51 -66.99 REMARK 500 CYS C 182 73.17 -104.72 REMARK 500 ASN D 243 15.12 54.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH D 581 DISTANCE = 6.17 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL C 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL C 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL C 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL C 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL C 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL C 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL D 401 DBREF 5YAA A 158 320 UNP Q8BJ34 MARF1_MOUSE 337 499 DBREF 5YAA B 158 320 UNP Q8BJ34 MARF1_MOUSE 337 499 DBREF 5YAA C 158 320 UNP Q8BJ34 MARF1_MOUSE 337 499 DBREF 5YAA D 158 320 UNP Q8BJ34 MARF1_MOUSE 337 499 SEQADV 5YAA MSE A 253 UNP Q8BJ34 LEU 432 ENGINEERED MUTATION SEQADV 5YAA MSE A 303 UNP Q8BJ34 LEU 482 ENGINEERED MUTATION SEQADV 5YAA MSE B 253 UNP Q8BJ34 LEU 432 ENGINEERED MUTATION SEQADV 5YAA MSE B 303 UNP Q8BJ34 LEU 482 ENGINEERED MUTATION SEQADV 5YAA MSE C 253 UNP Q8BJ34 LEU 432 ENGINEERED MUTATION SEQADV 5YAA MSE C 303 UNP Q8BJ34 LEU 482 ENGINEERED MUTATION SEQADV 5YAA MSE D 253 UNP Q8BJ34 LEU 432 ENGINEERED MUTATION SEQADV 5YAA MSE D 303 UNP Q8BJ34 LEU 482 ENGINEERED MUTATION SEQRES 1 A 163 PRO GLU VAL ALA VAL THR GLY GLN VAL LEU GLU THR LEU SEQRES 2 A 163 PRO PRO ILE GLY VAL PHE TRP ASP ILE GLU ASN CYS SER SEQRES 3 A 163 VAL PRO SER GLY ARG SER ALA THR THR VAL VAL GLN ARG SEQRES 4 A 163 ILE ARG GLU LYS PHE PHE ARG GLY HIS ARG GLU ALA GLU SEQRES 5 A 163 PHE ILE CYS VAL CYS ASP ILE SER LYS GLU ASN LYS GLU SEQRES 6 A 163 VAL ILE GLN GLU LEU ASN ASN CYS GLN VAL THR VAL ALA SEQRES 7 A 163 HIS ILE ASN ALA THR ALA LYS ASN ALA ALA ASP ASP LYS SEQRES 8 A 163 LEU ARG GLN SER MSE ARG ARG PHE ALA ASN THR HIS THR SEQRES 9 A 163 ALA PRO ALA THR VAL VAL LEU VAL SER THR ASP VAL ASN SEQRES 10 A 163 PHE ALA LEU GLU LEU SER ASP LEU ARG HIS ARG HIS GLY SEQRES 11 A 163 PHE HIS ILE ILE LEU VAL HIS LYS ASN GLN ALA SER GLU SEQRES 12 A 163 ALA LEU MSE HIS HIS ALA ASN GLN LEU ILE ARG PHE GLU SEQRES 13 A 163 GLU PHE ILE SER ASP LEU PRO SEQRES 1 B 163 PRO GLU VAL ALA VAL THR GLY GLN VAL LEU GLU THR LEU SEQRES 2 B 163 PRO PRO ILE GLY VAL PHE TRP ASP ILE GLU ASN CYS SER SEQRES 3 B 163 VAL PRO SER GLY ARG SER ALA THR THR VAL VAL GLN ARG SEQRES 4 B 163 ILE ARG GLU LYS PHE PHE ARG GLY HIS ARG GLU ALA GLU SEQRES 5 B 163 PHE ILE CYS VAL CYS ASP ILE SER LYS GLU ASN LYS GLU SEQRES 6 B 163 VAL ILE GLN GLU LEU ASN ASN CYS GLN VAL THR VAL ALA SEQRES 7 B 163 HIS ILE ASN ALA THR ALA LYS ASN ALA ALA ASP ASP LYS SEQRES 8 B 163 LEU ARG GLN SER MSE ARG ARG PHE ALA ASN THR HIS THR SEQRES 9 B 163 ALA PRO ALA THR VAL VAL LEU VAL SER THR ASP VAL ASN SEQRES 10 B 163 PHE ALA LEU GLU LEU SER ASP LEU ARG HIS ARG HIS GLY SEQRES 11 B 163 PHE HIS ILE ILE LEU VAL HIS LYS ASN GLN ALA SER GLU SEQRES 12 B 163 ALA LEU MSE HIS HIS ALA ASN GLN LEU ILE ARG PHE GLU SEQRES 13 B 163 GLU PHE ILE SER ASP LEU PRO SEQRES 1 C 163 PRO GLU VAL ALA VAL THR GLY GLN VAL LEU GLU THR LEU SEQRES 2 C 163 PRO PRO ILE GLY VAL PHE TRP ASP ILE GLU ASN CYS SER SEQRES 3 C 163 VAL PRO SER GLY ARG SER ALA THR THR VAL VAL GLN ARG SEQRES 4 C 163 ILE ARG GLU LYS PHE PHE ARG GLY HIS ARG GLU ALA GLU SEQRES 5 C 163 PHE ILE CYS VAL CYS ASP ILE SER LYS GLU ASN LYS GLU SEQRES 6 C 163 VAL ILE GLN GLU LEU ASN ASN CYS GLN VAL THR VAL ALA SEQRES 7 C 163 HIS ILE ASN ALA THR ALA LYS ASN ALA ALA ASP ASP LYS SEQRES 8 C 163 LEU ARG GLN SER MSE ARG ARG PHE ALA ASN THR HIS THR SEQRES 9 C 163 ALA PRO ALA THR VAL VAL LEU VAL SER THR ASP VAL ASN SEQRES 10 C 163 PHE ALA LEU GLU LEU SER ASP LEU ARG HIS ARG HIS GLY SEQRES 11 C 163 PHE HIS ILE ILE LEU VAL HIS LYS ASN GLN ALA SER GLU SEQRES 12 C 163 ALA LEU MSE HIS HIS ALA ASN GLN LEU ILE ARG PHE GLU SEQRES 13 C 163 GLU PHE ILE SER ASP LEU PRO SEQRES 1 D 163 PRO GLU VAL ALA VAL THR GLY GLN VAL LEU GLU THR LEU SEQRES 2 D 163 PRO PRO ILE GLY VAL PHE TRP ASP ILE GLU ASN CYS SER SEQRES 3 D 163 VAL PRO SER GLY ARG SER ALA THR THR VAL VAL GLN ARG SEQRES 4 D 163 ILE ARG GLU LYS PHE PHE ARG GLY HIS ARG GLU ALA GLU SEQRES 5 D 163 PHE ILE CYS VAL CYS ASP ILE SER LYS GLU ASN LYS GLU SEQRES 6 D 163 VAL ILE GLN GLU LEU ASN ASN CYS GLN VAL THR VAL ALA SEQRES 7 D 163 HIS ILE ASN ALA THR ALA LYS ASN ALA ALA ASP ASP LYS SEQRES 8 D 163 LEU ARG GLN SER MSE ARG ARG PHE ALA ASN THR HIS THR SEQRES 9 D 163 ALA PRO ALA THR VAL VAL LEU VAL SER THR ASP VAL ASN SEQRES 10 D 163 PHE ALA LEU GLU LEU SER ASP LEU ARG HIS ARG HIS GLY SEQRES 11 D 163 PHE HIS ILE ILE LEU VAL HIS LYS ASN GLN ALA SER GLU SEQRES 12 D 163 ALA LEU MSE HIS HIS ALA ASN GLN LEU ILE ARG PHE GLU SEQRES 13 D 163 GLU PHE ILE SER ASP LEU PRO HET MSE A 253 8 HET MSE A 303 8 HET MSE B 253 8 HET MSE B 303 8 HET MSE C 253 8 HET MSE C 303 8 HET MSE D 253 8 HET MSE D 303 8 HET GOL A 401 6 HET GOL A 402 6 HET GOL A 403 6 HET GOL B 401 6 HET GOL B 402 6 HET GOL B 403 6 HET GOL C 401 6 HET GOL C 402 6 HET GOL C 403 6 HET GOL C 404 6 HET GOL C 405 6 HET GOL C 406 6 HET GOL D 401 6 HETNAM MSE SELENOMETHIONINE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 5 GOL 13(C3 H8 O3) FORMUL 18 HOH *277(H2 O) HELIX 1 AA1 SER A 189 PHE A 202 1 14 HELIX 2 AA2 ASP A 215 GLU A 219 5 5 HELIX 3 AA3 ASN A 220 CYS A 230 1 11 HELIX 4 AA4 ASN A 243 HIS A 260 1 18 HELIX 5 AA5 ASP A 272 ASN A 274 5 3 HELIX 6 AA6 PHE A 275 ARG A 285 1 11 HELIX 7 AA7 SER A 299 HIS A 304 1 6 HELIX 8 AA8 GLU A 313 ILE A 316 5 4 HELIX 9 AA9 SER B 189 PHE B 202 1 14 HELIX 10 AB1 ASP B 215 GLU B 219 5 5 HELIX 11 AB2 ASN B 220 CYS B 230 1 11 HELIX 12 AB3 ASN B 243 HIS B 260 1 18 HELIX 13 AB4 ASP B 272 ASN B 274 5 3 HELIX 14 AB5 PHE B 275 ARG B 285 1 11 HELIX 15 AB6 SER B 299 HIS B 304 1 6 HELIX 16 AB7 GLU B 313 SER B 317 5 5 HELIX 17 AB8 SER C 189 PHE C 202 1 14 HELIX 18 AB9 ASP C 215 GLU C 219 5 5 HELIX 19 AC1 ASN C 220 CYS C 230 1 11 HELIX 20 AC2 ASN C 243 HIS C 260 1 18 HELIX 21 AC3 ASP C 272 ASN C 274 5 3 HELIX 22 AC4 PHE C 275 ARG C 285 1 11 HELIX 23 AC5 SER C 299 HIS C 304 1 6 HELIX 24 AC6 GLU C 313 ILE C 316 5 4 HELIX 25 AC7 SER D 189 PHE D 202 1 14 HELIX 26 AC8 ASP D 215 GLU D 219 5 5 HELIX 27 AC9 ASN D 220 CYS D 230 1 11 HELIX 28 AD1 ASN D 243 HIS D 260 1 18 HELIX 29 AD2 ASP D 272 ASN D 274 5 3 HELIX 30 AD3 PHE D 275 ARG D 285 1 11 HELIX 31 AD4 SER D 299 HIS D 304 1 6 HELIX 32 AD5 GLU D 313 ILE D 316 5 4 SHEET 1 AA1 6 THR A 233 HIS A 236 0 SHEET 2 AA1 6 ARG A 206 CYS A 214 1 N CYS A 212 O THR A 233 SHEET 3 AA1 6 PRO A 172 ASP A 178 1 N ILE A 173 O ALA A 208 SHEET 4 AA1 6 THR A 265 VAL A 269 1 O VAL A 267 N GLY A 174 SHEET 5 AA1 6 HIS A 289 HIS A 294 1 O ILE A 291 N VAL A 266 SHEET 6 AA1 6 GLN A 308 ARG A 311 1 O ILE A 310 N LEU A 292 SHEET 1 AA2 6 THR B 233 HIS B 236 0 SHEET 2 AA2 6 ARG B 206 CYS B 214 1 N CYS B 212 O THR B 233 SHEET 3 AA2 6 PRO B 172 ASP B 178 1 N ILE B 173 O ALA B 208 SHEET 4 AA2 6 THR B 265 VAL B 269 1 O VAL B 267 N GLY B 174 SHEET 5 AA2 6 HIS B 289 HIS B 294 1 O ILE B 291 N VAL B 266 SHEET 6 AA2 6 GLN B 308 ARG B 311 1 O ILE B 310 N LEU B 292 SHEET 1 AA3 6 THR C 233 HIS C 236 0 SHEET 2 AA3 6 ARG C 206 CYS C 214 1 N CYS C 212 O THR C 233 SHEET 3 AA3 6 PRO C 172 ASP C 178 1 N ILE C 173 O ALA C 208 SHEET 4 AA3 6 THR C 265 VAL C 269 1 O VAL C 267 N GLY C 174 SHEET 5 AA3 6 HIS C 289 HIS C 294 1 O ILE C 291 N VAL C 266 SHEET 6 AA3 6 GLN C 308 ARG C 311 1 O GLN C 308 N LEU C 292 SHEET 1 AA4 6 THR D 233 HIS D 236 0 SHEET 2 AA4 6 ARG D 206 CYS D 214 1 N CYS D 212 O THR D 233 SHEET 3 AA4 6 PRO D 172 ASP D 178 1 N ILE D 173 O ALA D 208 SHEET 4 AA4 6 THR D 265 VAL D 269 1 O VAL D 269 N PHE D 176 SHEET 5 AA4 6 HIS D 289 HIS D 294 1 O ILE D 291 N VAL D 266 SHEET 6 AA4 6 GLN D 308 ARG D 311 1 O GLN D 308 N LEU D 292 LINK C SER A 252 N MSE A 253 1555 1555 1.34 LINK C MSE A 253 N ARG A 254 1555 1555 1.34 LINK C LEU A 302 N MSE A 303 1555 1555 1.32 LINK C MSE A 303 N HIS A 304 1555 1555 1.32 LINK C SER B 252 N MSE B 253 1555 1555 1.34 LINK C MSE B 253 N ARG B 254 1555 1555 1.34 LINK C LEU B 302 N MSE B 303 1555 1555 1.32 LINK C MSE B 303 N HIS B 304 1555 1555 1.33 LINK C SER C 252 N MSE C 253 1555 1555 1.33 LINK C MSE C 253 N ARG C 254 1555 1555 1.34 LINK C LEU C 302 N MSE C 303 1555 1555 1.32 LINK C MSE C 303 N HIS C 304 1555 1555 1.31 LINK C SER D 252 N MSE D 253 1555 1555 1.34 LINK C MSE D 253 N ARG D 254 1555 1555 1.34 LINK C LEU D 302 N MSE D 303 1555 1555 1.33 LINK C MSE D 303 N HIS D 304 1555 1555 1.34 CISPEP 1 ALA A 262 PRO A 263 0 1.28 CISPEP 2 ALA B 262 PRO B 263 0 1.99 CISPEP 3 ALA C 262 PRO C 263 0 0.69 CISPEP 4 ALA D 262 PRO D 263 0 1.54 CISPEP 5 ASN D 296 GLN D 297 0 -12.96 SITE 1 AC1 7 ARG A 283 HIS A 284 HIS A 304 HIS A 305 SITE 2 AC1 7 HOH A 531 GLN B 195 HOH B 525 SITE 1 AC2 5 ARG A 283 ASN A 307 HOH A 502 HOH A 546 SITE 2 AC2 5 HOH B 504 SITE 1 AC3 2 HOH A 504 GOL C 406 SITE 1 AC4 2 ARG B 203 HOH B 510 SITE 1 AC5 3 HIS B 289 GOL B 403 HOH B 521 SITE 1 AC6 4 PHE B 201 ARG B 203 GOL B 402 HOH B 521 SITE 1 AC7 8 ALA C 262 GLY C 287 GOL C 403 HOH C 510 SITE 2 AC7 8 HOH C 527 HOH C 535 LEU D 170 HIS D 205 SITE 1 AC8 6 PHE C 201 ARG C 203 HIS C 205 ILE C 291 SITE 2 AC8 6 GOL C 405 GOL C 406 SITE 1 AC9 4 ARG C 283 ASN C 307 GOL C 401 HOH C 512 SITE 1 AD1 5 ARG C 283 HIS C 284 HIS C 304 HIS C 305 SITE 2 AD1 5 HOH D 539 SITE 1 AD2 4 HIS C 289 GLN C 308 GOL C 402 HOH C 503 SITE 1 AD3 4 GOL A 403 ARG C 203 GLY C 204 GOL C 402 SITE 1 AD4 6 ARG B 311 HIS D 294 GLN D 297 MSE D 303 SITE 2 AD4 6 ARG D 311 HOH D 510 CRYST1 163.470 163.470 56.151 90.00 90.00 120.00 H 3 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006117 0.003532 0.000000 0.00000 SCALE2 0.000000 0.007064 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017809 0.00000