HEADER RNA BINDING PROTEIN 31-AUG-17 5YAC TITLE CRYSTAL STRUCTURE OF WT TRM5B FROM PYROCOCCUS ABYSSI COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRNA (GUANINE(37)-N1)-METHYLTRANSFERASE TRM5B; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: M1G-METHYLTRANSFERASE,TRNA [GM37] METHYLTRANSFERASE; COMPND 5 EC: 2.1.1.228; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS ABYSSI (STRAIN GE5 / ORSAY); SOURCE 3 ORGANISM_TAXID: 272844; SOURCE 4 STRAIN: GE5 / ORSAY; SOURCE 5 GENE: TRM5B, PYRAB07390, PAB0505; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRNA METHYLTRANSFERASE, OPEN CONFORMATION, WYOSINE BIOSYNTHESIS, TRNA KEYWDS 2 MATURATION, RNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR W.XIE,J.WU REVDAT 5 22-NOV-23 5YAC 1 REMARK REVDAT 4 18-JUL-18 5YAC 1 REMARK REVDAT 3 18-OCT-17 5YAC 1 JRNL REVDAT 2 04-OCT-17 5YAC 1 JRNL REVDAT 1 27-SEP-17 5YAC 0 JRNL AUTH J.WU,Q.JIA,S.WU,H.ZENG,Y.SUN,C.WANG,R.GE,W.XIE JRNL TITL THE CRYSTAL STRUCTURE OF THE PYROCOCCUS ABYSSI JRNL TITL 2 MONO-FUNCTIONAL METHYLTRANSFERASE PATRM5B JRNL REF BIOCHEM. BIOPHYS. RES. V. 493 240 2017 JRNL REF 2 COMMUN. JRNL REFN ESSN 1090-2104 JRNL PMID 28911863 JRNL DOI 10.1016/J.BBRC.2017.09.038 REMARK 2 REMARK 2 RESOLUTION. 3.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.15 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 5338 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.244 REMARK 3 R VALUE (WORKING SET) : 0.242 REMARK 3 FREE R VALUE : 0.288 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 279 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.38 REMARK 3 REFLECTION IN BIN (WORKING SET) : 373 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3550 REMARK 3 BIN FREE R VALUE SET COUNT : 23 REMARK 3 BIN FREE R VALUE : 0.3060 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2390 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 67.72 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.87000 REMARK 3 B22 (A**2) : -3.75000 REMARK 3 B33 (A**2) : 5.62000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.649 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.566 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 35.683 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.919 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.863 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2439 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2197 ; 0.008 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3336 ; 1.269 ; 1.962 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5004 ; 0.984 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 329 ; 6.284 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 98 ;35.095 ;24.388 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 333 ;18.321 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;11.313 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 390 ; 0.065 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2866 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 539 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1319 ; 4.485 ; 7.269 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1318 ; 4.486 ; 7.269 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1647 ; 7.187 ;10.910 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1648 ; 7.185 ;10.910 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1120 ; 4.427 ; 7.417 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1120 ; 4.427 ; 7.418 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1689 ; 7.228 ;11.038 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2683 ;10.323 ;58.562 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2684 ;10.326 ;58.572 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5YAC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 31-AUG-17. REMARK 100 THE DEPOSITION ID IS D_1300004938. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-AUG-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : SEALED TUBE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : AGILENT SUPERNOVA REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5406 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : OXFORD ONYX CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSALISPRO REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 5639 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.300 REMARK 200 RESOLUTION RANGE LOW (A) : 25.150 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.20400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.98000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5HJM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12% (W/V) PEG 3350, 100 MM HEPES (PH REMARK 280 7.5), 100 MM CA(OAC)2 AND 100 MM KCL, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.72200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.58200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.28350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 47.58200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.72200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.28350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -15 REMARK 465 GLY A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 GLU A -7 REMARK 465 ASN A -6 REMARK 465 LEU A -5 REMARK 465 TYR A -4 REMARK 465 PHE A -3 REMARK 465 GLN A -2 REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CG SD CE REMARK 470 LYS A 6 CG CD CE NZ REMARK 470 VAL A 7 CG1 CG2 REMARK 470 LEU A 9 CG CD1 CD2 REMARK 470 LYS A 10 CG CD CE NZ REMARK 470 GLU A 11 CG CD OE1 OE2 REMARK 470 ILE A 14 CG1 CG2 CD1 REMARK 470 ARG A 16 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 17 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 18 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 20 CG1 CG2 CD1 REMARK 470 GLU A 21 CG CD OE1 OE2 REMARK 470 LYS A 30 CG CD CE NZ REMARK 470 LYS A 32 CG CD CE NZ REMARK 470 ASN A 36 CG OD1 ND2 REMARK 470 PHE A 37 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 47 CG CD CE NZ REMARK 470 VAL A 52 CG1 CG2 REMARK 470 GLU A 53 CG CD OE1 OE2 REMARK 470 GLN A 58 CG CD OE1 NE2 REMARK 470 ARG A 61 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 62 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 67 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 74 CG CD OE1 NE2 REMARK 470 ARG A 77 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 78 CG CD NE CZ NH1 NH2 REMARK 470 PHE A 79 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU A 80 CG CD1 CD2 REMARK 470 ILE A 86 CD1 REMARK 470 ILE A 87 CD1 REMARK 470 LYS A 100 CG CD CE NZ REMARK 470 ARG A 108 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 115 CG CD CE NZ REMARK 470 LYS A 126 CG CD CE NZ REMARK 470 ILE A 127 CG1 CG2 CD1 REMARK 470 GLU A 130 CG CD OE1 OE2 REMARK 470 TYR A 131 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG A 132 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 134 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 137 CG1 CG2 CD1 REMARK 470 ILE A 148 CG1 CG2 CD1 REMARK 470 ARG A 155 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 157 CG CD CE NZ REMARK 470 LYS A 162 CG CD CE NZ REMARK 470 VAL A 163 CG1 CG2 REMARK 470 LYS A 178 CG CD CE NZ REMARK 470 MET A 179 CE REMARK 470 GLN A 181 CG CD OE1 NE2 REMARK 470 GLU A 182 CG CD OE1 OE2 REMARK 470 GLU A 184 CG CD OE1 OE2 REMARK 470 LYS A 202 CG CD CE NZ REMARK 470 ILE A 212 CG1 CG2 CD1 REMARK 470 LYS A 218 CG CD CE NZ REMARK 470 LYS A 225 CG CD CE NZ REMARK 470 LEU A 226 CG CD1 CD2 REMARK 470 LYS A 228 CG CD CE NZ REMARK 470 VAL A 229 CG1 CG2 REMARK 470 GLU A 282 CG CD OE1 OE2 REMARK 470 ARG A 294 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 299 CG CD CE NZ REMARK 470 PHE A 300 CG CD1 CD2 CE1 CE2 CZ REMARK 470 VAL A 302 CG1 CG2 REMARK 470 LYS A 303 CG CD CE NZ REMARK 470 VAL A 304 CG1 CG2 REMARK 470 LYS A 309 CG CD CE NZ REMARK 470 ASN A 314 CG OD1 ND2 REMARK 470 TYR A 315 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG A 318 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 319 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 65 -174.42 55.56 REMARK 500 ASN A 71 -170.17 -173.27 REMARK 500 GLU A 130 -64.46 -99.04 REMARK 500 ASN A 143 57.51 -93.66 REMARK 500 GLU A 151 -82.05 -123.30 REMARK 500 LYS A 203 37.39 -151.88 REMARK 500 ASP A 284 60.11 -158.92 REMARK 500 ARG A 313 148.94 179.59 REMARK 500 REMARK 500 REMARK: NULL DBREF 5YAC A 1 330 UNP Q9V0Q0 TRM5B_PYRAB 1 330 SEQADV 5YAC MET A -15 UNP Q9V0Q0 EXPRESSION TAG SEQADV 5YAC GLY A -14 UNP Q9V0Q0 EXPRESSION TAG SEQADV 5YAC HIS A -13 UNP Q9V0Q0 EXPRESSION TAG SEQADV 5YAC HIS A -12 UNP Q9V0Q0 EXPRESSION TAG SEQADV 5YAC HIS A -11 UNP Q9V0Q0 EXPRESSION TAG SEQADV 5YAC HIS A -10 UNP Q9V0Q0 EXPRESSION TAG SEQADV 5YAC HIS A -9 UNP Q9V0Q0 EXPRESSION TAG SEQADV 5YAC HIS A -8 UNP Q9V0Q0 EXPRESSION TAG SEQADV 5YAC GLU A -7 UNP Q9V0Q0 EXPRESSION TAG SEQADV 5YAC ASN A -6 UNP Q9V0Q0 EXPRESSION TAG SEQADV 5YAC LEU A -5 UNP Q9V0Q0 EXPRESSION TAG SEQADV 5YAC TYR A -4 UNP Q9V0Q0 EXPRESSION TAG SEQADV 5YAC PHE A -3 UNP Q9V0Q0 EXPRESSION TAG SEQADV 5YAC GLN A -2 UNP Q9V0Q0 EXPRESSION TAG SEQADV 5YAC GLY A -1 UNP Q9V0Q0 EXPRESSION TAG SEQADV 5YAC HIS A 0 UNP Q9V0Q0 EXPRESSION TAG SEQRES 1 A 346 MET GLY HIS HIS HIS HIS HIS HIS GLU ASN LEU TYR PHE SEQRES 2 A 346 GLN GLY HIS MET THR LEU ALA VAL LYS VAL PRO LEU LYS SEQRES 3 A 346 GLU GLY GLU ILE VAL ARG ARG ARG LEU ILE GLU LEU GLY SEQRES 4 A 346 ALA LEU ASP ASN THR TYR LYS ILE LYS ARG GLU GLY ASN SEQRES 5 A 346 PHE LEU LEU ILE PRO VAL LYS PHE PRO VAL LYS GLY PHE SEQRES 6 A 346 GLU VAL VAL GLU ALA GLU LEU GLU GLN VAL SER ARG ARG SEQRES 7 A 346 PRO ASN SER TYR ARG GLU ILE VAL ASN VAL PRO GLN GLU SEQRES 8 A 346 LEU ARG ARG PHE LEU PRO THR SER PHE ASP ILE ILE GLY SEQRES 9 A 346 ASN ILE ALA ILE ILE GLU ILE PRO GLU GLU LEU LYS GLY SEQRES 10 A 346 TYR ALA LYS GLU ILE GLY ARG ALA ILE VAL GLU VAL HIS SEQRES 11 A 346 LYS ASN VAL LYS ALA VAL TYR MET LYS GLY SER LYS ILE SEQRES 12 A 346 GLU GLY GLU TYR ARG THR ARG GLU LEU ILE HIS ILE ALA SEQRES 13 A 346 GLY GLU ASN ILE THR GLU THR ILE HIS ARG GLU ASN GLY SEQRES 14 A 346 ILE ARG LEU LYS LEU ASP VAL ALA LYS VAL TYR PHE SER SEQRES 15 A 346 PRO ARG LEU ALA THR GLU ARG MET ARG VAL PHE LYS MET SEQRES 16 A 346 ALA GLN GLU GLY GLU VAL VAL PHE ASP MET PHE ALA GLY SEQRES 17 A 346 VAL GLY PRO PHE SER ILE LEU LEU ALA LYS LYS ALA GLU SEQRES 18 A 346 LEU VAL PHE ALA CYS ASP ILE ASN PRO TRP ALA ILE LYS SEQRES 19 A 346 TYR LEU GLU GLU ASN ILE LYS LEU ASN LYS VAL ASN ASN SEQRES 20 A 346 VAL VAL PRO ILE LEU GLY ASP SER ARG GLU ILE GLU VAL SEQRES 21 A 346 LYS ALA ASP ARG ILE ILE MET ASN LEU PRO LYS TYR ALA SEQRES 22 A 346 HIS GLU PHE LEU GLU HIS ALA ILE SER CYS ILE ASN ASP SEQRES 23 A 346 GLY GLY VAL ILE HIS TYR TYR GLY PHE GLY PRO GLU GLY SEQRES 24 A 346 ASP PRO TYR GLY TRP HIS LEU GLU ARG ILE ARG GLU LEU SEQRES 25 A 346 ALA ASN LYS PHE GLY VAL LYS VAL GLU VAL LEU GLY LYS SEQRES 26 A 346 ARG VAL ILE ARG ASN TYR ALA PRO ARG GLN TYR ASN ILE SEQRES 27 A 346 ALA ILE ASP PHE ARG VAL SER PHE HELIX 1 AA1 GLU A 11 GLY A 23 1 13 HELIX 2 AA2 VAL A 72 LEU A 80 1 9 HELIX 3 AA3 LEU A 99 GLY A 101 5 3 HELIX 4 AA4 TYR A 102 HIS A 114 1 13 HELIX 5 AA5 SER A 166 ARG A 168 5 3 HELIX 6 AA6 LEU A 169 ALA A 180 1 12 HELIX 7 AA7 GLY A 194 LYS A 202 1 9 HELIX 8 AA8 ASN A 213 ASN A 227 1 15 HELIX 9 AA9 ASP A 238 ILE A 242 5 5 HELIX 10 AB1 TYR A 256 CYS A 267 1 12 HELIX 11 AB2 TYR A 286 GLY A 301 1 16 SHEET 1 AA1 4 LYS A 32 ARG A 33 0 SHEET 2 AA1 4 PHE A 37 PRO A 41 -1 O LEU A 39 N LYS A 32 SHEET 3 AA1 4 THR A 2 PRO A 8 -1 N VAL A 7 O LEU A 38 SHEET 4 AA1 4 VAL A 51 ALA A 54 -1 O ALA A 54 N THR A 2 SHEET 1 AA2 4 ASP A 85 ILE A 87 0 SHEET 2 AA2 4 ILE A 90 ILE A 93 -1 O ILE A 92 N ASP A 85 SHEET 3 AA2 4 ALA A 119 ILE A 127 1 O TYR A 121 N ALA A 91 SHEET 4 AA2 4 ARG A 132 GLY A 141 -1 O THR A 133 N LYS A 126 SHEET 1 AA3 2 GLU A 146 ARG A 150 0 SHEET 2 AA3 2 ARG A 155 ASP A 159 -1 O LEU A 158 N THR A 147 SHEET 1 AA4 7 VAL A 232 LEU A 236 0 SHEET 2 AA4 7 ALA A 204 ASP A 211 1 N ALA A 209 O VAL A 233 SHEET 3 AA4 7 GLU A 184 ASP A 188 1 N ASP A 188 O PHE A 208 SHEET 4 AA4 7 ALA A 246 MET A 251 1 O ARG A 248 N PHE A 187 SHEET 5 AA4 7 ILE A 268 GLY A 280 1 O HIS A 275 N ILE A 249 SHEET 6 AA4 7 TYR A 320 SER A 329 -1 O PHE A 326 N ILE A 274 SHEET 7 AA4 7 LYS A 303 ASN A 314 -1 N LEU A 307 O ASP A 325 CRYST1 41.444 88.567 95.164 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024129 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011291 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010508 0.00000