HEADER CYTOKINE 01-SEP-17 5YAM TITLE SOLUTION STRUCTURE OF MICE MET-CCL5/RANTES COMPND MOL_ID: 1; COMPND 2 MOLECULE: C-C MOTIF CHEMOKINE 5; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: MURANTES,SIS-DELTA,SMALL-INDUCIBLE CYTOKINE A5,T-CELL- COMPND 5 SPECIFIC PROTEIN RANTES; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: CCL5, SCYA5; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI-THERMUS THERMOPHILUS SHUTTLE SOURCE 7 VECTOR PTRH1T; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 1085940; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS INFLAMMATORY, HEPARIN, DIMER, ANTAGONIST, CHEMOKINE, CYTOKINE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR Y.-C.CHEN,S.-P.CHEN,Y.-Z.LEE,S.-C.SUE REVDAT 4 15-MAY-24 5YAM 1 REMARK REVDAT 3 14-JUN-23 5YAM 1 REMARK REVDAT 2 18-MAR-20 5YAM 1 JRNL REMARK REVDAT 1 05-SEP-18 5YAM 0 JRNL AUTH Y.C.CHEN,S.P.CHEN,J.Y.LI,P.C.CHEN,Y.Z.LEE,K.M.LI,R.ZARIVACH, JRNL AUTH 2 Y.J.SUN,S.C.SUE JRNL TITL INTEGRATIVE MODEL TO COORDINATE THE OLIGOMERIZATION AND JRNL TITL 2 AGGREGATION MECHANISMS OF CCL5. JRNL REF J.MOL.BIOL. V. 432 1143 2020 JRNL REFN ESSN 1089-8638 JRNL PMID 31931012 JRNL DOI 10.1016/J.JMB.2019.12.049 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5YAM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-SEP-17. REMARK 100 THE DEPOSITION ID IS D_1300002630. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 3.2 REMARK 210 IONIC STRENGTH : 150 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 200 UM [U-13C; U-15N] C-C MOTIF REMARK 210 CHEMOKINE 5, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCO; 3D REMARK 210 HNCA; 3D HNCACB; 3D HN(CO)CA; 3D REMARK 210 HN(COCA)CB; 3D HBHA(CO)NH; 3D REMARK 210 H(CCO)NH; 3D C(CO)NH; 3D HCCH- REMARK 210 TOCSY; 3D HCCH-COSY; 2D 1H-13C REMARK 210 HSQC AROMATIC; 3D 1H-15N NOESY; REMARK 210 3D 1H-13C NOESY ALIPHATIC; 3D 1H- REMARK 210 13C NOESY AROMATIC; 2D REMARK 210 HBCBCGCDHD; 2D HBCBCGCDCEHE REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 850 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 3.0, SPARKY, NMRPIPE, REMARK 210 TOPSPIN 3.5, TALOS REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 6 78.92 67.90 REMARK 500 1 LEU A 18 52.37 -93.50 REMARK 500 1 SER B 6 53.56 -93.64 REMARK 500 2 SER A 6 95.82 64.26 REMARK 500 2 PHE A 13 89.13 -155.96 REMARK 500 2 SER B 2 67.51 -151.35 REMARK 500 2 SER B 6 91.54 68.07 REMARK 500 2 ASP B 7 -159.40 -120.59 REMARK 500 2 PHE B 13 89.67 -168.52 REMARK 500 2 ALA B 14 -171.63 -179.48 REMARK 500 2 PRO B 54 5.25 -66.51 REMARK 500 3 SER A 6 86.74 -150.75 REMARK 500 3 THR A 8 102.73 -55.29 REMARK 500 3 PHE A 13 32.86 -155.10 REMARK 500 3 PRO B 3 30.69 -79.97 REMARK 500 3 PHE B 13 71.67 -157.70 REMARK 500 4 SER A 6 73.09 52.99 REMARK 500 4 THR A 8 105.87 -38.11 REMARK 500 4 LEU B 18 44.03 -84.02 REMARK 500 4 THR B 31 -178.83 -69.81 REMARK 500 5 PHE A 13 79.81 -152.41 REMARK 500 5 LEU A 18 77.95 -101.28 REMARK 500 5 PRO A 54 5.36 -68.66 REMARK 500 5 THR B 8 110.74 -36.31 REMARK 500 5 PHE B 13 83.43 -165.03 REMARK 500 5 ALA B 14 -174.48 -170.45 REMARK 500 6 LEU A 18 74.81 -100.71 REMARK 500 6 SER B 6 82.55 -157.79 REMARK 500 6 PHE B 13 71.04 -160.45 REMARK 500 6 LEU B 18 42.86 -90.04 REMARK 500 6 PRO B 54 2.18 -68.98 REMARK 500 7 TYR A 4 -58.01 -126.14 REMARK 500 7 SER A 6 79.51 55.56 REMARK 500 7 ASP A 7 -37.11 -142.66 REMARK 500 7 PHE A 13 63.53 -153.32 REMARK 500 7 THR B 8 119.65 -178.53 REMARK 500 7 CYS B 12 157.17 176.44 REMARK 500 7 PHE B 13 80.47 -152.13 REMARK 500 7 PRO B 21 159.48 -47.69 REMARK 500 8 SER A 2 85.14 58.24 REMARK 500 8 SER A 6 82.83 68.68 REMARK 500 8 SER B 2 86.17 64.76 REMARK 500 8 SER B 6 86.66 66.42 REMARK 500 8 ASP B 7 -168.43 -129.76 REMARK 500 8 CYS B 12 147.99 -175.85 REMARK 500 8 ALA B 14 -166.50 -173.31 REMARK 500 9 SER A 6 79.95 -157.71 REMARK 500 9 THR A 8 106.92 -46.53 REMARK 500 9 PHE A 13 32.88 -154.99 REMARK 500 9 TYR A 15 -33.64 -150.90 REMARK 500 REMARK 500 THIS ENTRY HAS 129 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5CMD RELATED DB: PDB REMARK 900 OLIGOMER STRUCTURE OF HUMAN CCL5 REMARK 900 RELATED ID: 1EQT RELATED DB: PDB REMARK 900 HUMAN MET-RANTES REMARK 900 RELATED ID: 26991 RELATED DB: BMRB DBREF 5YAM A 2 69 UNP P30882 CCL5_MOUSE 24 91 DBREF 5YAM B 2 69 UNP P30882 CCL5_MOUSE 24 91 SEQADV 5YAM MET A 1 UNP P30882 EXPRESSION TAG SEQADV 5YAM MET B 1 UNP P30882 EXPRESSION TAG SEQRES 1 A 69 MET SER PRO TYR GLY SER ASP THR THR PRO CYS CYS PHE SEQRES 2 A 69 ALA TYR LEU SER LEU ALA LEU PRO ARG ALA HIS VAL LYS SEQRES 3 A 69 GLU TYR PHE TYR THR SER SER LYS CYS SER ASN LEU ALA SEQRES 4 A 69 VAL VAL PHE VAL THR ARG ARG ASN ARG GLN VAL CYS ALA SEQRES 5 A 69 ASN PRO GLU LYS LYS TRP VAL GLN GLU TYR ILE ASN TYR SEQRES 6 A 69 LEU GLU MET SER SEQRES 1 B 69 MET SER PRO TYR GLY SER ASP THR THR PRO CYS CYS PHE SEQRES 2 B 69 ALA TYR LEU SER LEU ALA LEU PRO ARG ALA HIS VAL LYS SEQRES 3 B 69 GLU TYR PHE TYR THR SER SER LYS CYS SER ASN LEU ALA SEQRES 4 B 69 VAL VAL PHE VAL THR ARG ARG ASN ARG GLN VAL CYS ALA SEQRES 5 B 69 ASN PRO GLU LYS LYS TRP VAL GLN GLU TYR ILE ASN TYR SEQRES 6 B 69 LEU GLU MET SER HELIX 1 AA1 PRO A 21 ALA A 23 5 3 HELIX 2 AA2 LYS A 56 SER A 69 1 14 HELIX 3 AA3 PRO B 21 ALA B 23 5 3 HELIX 4 AA4 LYS B 56 MET B 68 1 13 SHEET 1 AA1 2 THR A 9 CYS A 11 0 SHEET 2 AA1 2 THR B 9 CYS B 11 -1 O CYS B 11 N THR A 9 SHEET 1 AA2 3 VAL A 25 TYR A 30 0 SHEET 2 AA2 3 VAL A 40 THR A 44 -1 O VAL A 41 N PHE A 29 SHEET 3 AA2 3 GLN A 49 ALA A 52 -1 O ALA A 52 N VAL A 40 SHEET 1 AA3 3 VAL B 25 TYR B 30 0 SHEET 2 AA3 3 VAL B 40 THR B 44 -1 O VAL B 43 N LYS B 26 SHEET 3 AA3 3 GLN B 49 ALA B 52 -1 O VAL B 50 N PHE B 42 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1