HEADER LIPID BINDING PROTEIN 02-SEP-17 5YB1 TITLE STRUCTURE AND FUNCTION OF HUMAN SERUM ALBUMIN-METAL AGENT COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERUM ALBUMIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ALB, GIG20, GIG42, PRO0903, PRO1708, PRO2044, PRO2619, SOURCE 6 PRO2675, UNQ696/PRO1341; SOURCE 7 EXPRESSION_SYSTEM: PICHIA KUDRIAVZEVII; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 4909 KEYWDS ALBUMIN, METAL COMPLEX, PRO-DRUG, DRUG CARRIER, TARGET THERAPY, LIPID KEYWDS 2 BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR F.YANG,T.WANG,J.WANG,Y.GOU,Z.L.ZHANG REVDAT 4 22-NOV-23 5YB1 1 REMARK REVDAT 3 04-DEC-19 5YB1 1 REMARK REVDAT 2 20-MAR-19 5YB1 1 JRNL REVDAT 1 05-SEP-18 5YB1 0 JRNL AUTH J.WANG,Y.GOU,Z.ZHANG,P.YU,J.QI,Q.QIN,H.SUN,X.WU,H.LIANG, JRNL AUTH 2 F.YANG JRNL TITL DEVELOPING AN ANTICANCER COPPER(II) MULTITARGET PRO-DRUG JRNL TITL 2 BASED ON THE HIS146 RESIDUE IN THE IB SUBDOMAIN OF MODIFIED JRNL TITL 3 HUMAN SERUM ALBUMIN. JRNL REF MOL. PHARM. V. 15 2180 2018 JRNL REFN ESSN 1543-8392 JRNL PMID 29722993 JRNL DOI 10.1021/ACS.MOLPHARMACEUT.8B00045 REMARK 2 REMARK 2 RESOLUTION. 2.62 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.62 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.970 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 38702 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.278 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 1948 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 31.7826 - 6.2898 0.93 2475 141 0.1569 0.2197 REMARK 3 2 6.2898 - 4.9987 0.99 2662 135 0.1976 0.2617 REMARK 3 3 4.9987 - 4.3686 0.99 2645 130 0.1695 0.1995 REMARK 3 4 4.3686 - 3.9700 0.99 2676 122 0.1783 0.2501 REMARK 3 5 3.9700 - 3.6859 0.99 2642 152 0.2089 0.2363 REMARK 3 6 3.6859 - 3.4689 0.99 2632 135 0.2357 0.3072 REMARK 3 7 3.4689 - 3.2953 0.99 2674 138 0.2691 0.3136 REMARK 3 8 3.2953 - 3.1520 0.99 2607 163 0.2808 0.3285 REMARK 3 9 3.1520 - 3.0308 0.99 2639 160 0.2990 0.3962 REMARK 3 10 3.0308 - 2.9263 0.99 2592 137 0.2971 0.3170 REMARK 3 11 2.9263 - 2.8348 0.98 2689 118 0.3140 0.4305 REMARK 3 12 2.8348 - 2.7539 0.98 2591 133 0.3025 0.4021 REMARK 3 13 2.7539 - 2.6814 0.98 2656 146 0.3191 0.3880 REMARK 3 14 2.6814 - 2.6160 0.96 2574 138 0.3054 0.3646 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.430 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.110 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 9723 REMARK 3 ANGLE : 0.810 13064 REMARK 3 CHIRALITY : 0.039 1414 REMARK 3 PLANARITY : 0.005 1673 REMARK 3 DIHEDRAL : 14.335 6144 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -9.4610 -23.6665 15.1391 REMARK 3 T TENSOR REMARK 3 T11: 0.3615 T22: 0.4682 REMARK 3 T33: 0.4203 T12: 0.0248 REMARK 3 T13: -0.0121 T23: -0.0101 REMARK 3 L TENSOR REMARK 3 L11: 0.0449 L22: 0.7388 REMARK 3 L33: 0.3000 L12: 0.1415 REMARK 3 L13: -0.0394 L23: -0.1747 REMARK 3 S TENSOR REMARK 3 S11: -0.0008 S12: -0.0028 S13: -0.0524 REMARK 3 S21: -0.0001 S22: -0.0390 S23: -0.2097 REMARK 3 S31: 0.0030 S32: -0.0054 S33: 0.0529 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5YB1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-NOV-17. REMARK 100 THE DEPOSITION ID IS D_1300004973. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-DEC-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38702 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.616 REMARK 200 RESOLUTION RANGE LOW (A) : 33.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.62 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.68 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.2 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.29800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 1BJ5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG3350, MPD, DMSO, PH 7.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 521 CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER B 287 O1 PLM B 602 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 31 67.82 -101.23 REMARK 500 ASP A 56 107.12 -161.00 REMARK 500 ASN A 61 -11.22 78.15 REMARK 500 PRO A 118 -179.83 -62.31 REMARK 500 ASN A 130 80.39 -159.24 REMARK 500 ILE A 271 -62.09 -132.12 REMARK 500 LYS A 286 -71.63 -53.15 REMARK 500 VAL A 310 -65.51 -138.49 REMARK 500 ALA A 322 84.83 -163.10 REMARK 500 LYS A 372 49.46 -94.99 REMARK 500 VAL A 469 -34.75 -136.81 REMARK 500 LYS A 536 71.11 -119.53 REMARK 500 LEU B 31 67.09 -101.77 REMARK 500 ASN B 61 -10.35 76.61 REMARK 500 ASN B 109 74.10 58.63 REMARK 500 PRO B 118 -178.19 -62.38 REMARK 500 ASN B 130 80.25 -160.12 REMARK 500 ILE B 271 -63.54 -131.27 REMARK 500 LYS B 286 -70.43 -54.22 REMARK 500 VAL B 310 -65.17 -139.67 REMARK 500 ALA B 322 84.10 -162.11 REMARK 500 LYS B 372 49.26 -94.15 REMARK 500 VAL B 469 -34.82 -137.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PLM A 601 REMARK 610 PLM A 603 REMARK 610 PLM A 605 REMARK 610 PLM B 601 REMARK 610 PLM B 603 REMARK 610 PLM B 605 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 8ZR A 608 CU1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 146 NE2 REMARK 620 2 8ZR A 608 N15 113.4 REMARK 620 3 8ZR A 608 N7 163.1 79.1 REMARK 620 4 8ZR A 608 S5 90.5 155.5 76.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 8ZR B 608 CU1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 146 NE2 REMARK 620 2 8ZR B 608 N15 113.8 REMARK 620 3 8ZR B 608 N7 160.7 79.7 REMARK 620 4 8ZR B 608 S5 89.0 156.5 76.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PLM A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PLM A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PLM A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PLM A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PLM A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PLM A 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PLM A 607 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 8ZR A 608 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PLM B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PLM B 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PLM B 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PLM B 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PLM B 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PLM B 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PLM B 607 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 8ZR B 608 DBREF 5YB1 A 3 583 UNP P02768 ALBU_HUMAN 27 607 DBREF 5YB1 B 3 583 UNP P02768 ALBU_HUMAN 27 607 SEQRES 1 A 581 HIS LYS SER GLU VAL ALA HIS ARG PHE LYS ASP LEU GLY SEQRES 2 A 581 GLU GLU ASN PHE LYS ALA LEU VAL LEU ILE ALA PHE ALA SEQRES 3 A 581 GLN TYR LEU GLN GLN CYS PRO PHE GLU ASP HIS VAL LYS SEQRES 4 A 581 LEU VAL ASN GLU VAL THR GLU PHE ALA LYS THR CYS VAL SEQRES 5 A 581 ALA ASP GLU SER ALA GLU ASN CYS ASP LYS SER LEU HIS SEQRES 6 A 581 THR LEU PHE GLY ASP LYS LEU CYS THR VAL ALA THR LEU SEQRES 7 A 581 ARG GLU THR TYR GLY GLU MET ALA ASP CYS CYS ALA LYS SEQRES 8 A 581 GLN GLU PRO GLU ARG ASN GLU CYS PHE LEU GLN HIS LYS SEQRES 9 A 581 ASP ASP ASN PRO ASN LEU PRO ARG LEU VAL ARG PRO GLU SEQRES 10 A 581 VAL ASP VAL MET CYS THR ALA PHE HIS ASP ASN GLU GLU SEQRES 11 A 581 THR PHE LEU LYS LYS TYR LEU TYR GLU ILE ALA ARG ARG SEQRES 12 A 581 HIS PRO TYR PHE TYR ALA PRO GLU LEU LEU PHE PHE ALA SEQRES 13 A 581 LYS ARG TYR LYS ALA ALA PHE THR GLU CYS CYS GLN ALA SEQRES 14 A 581 ALA ASP LYS ALA ALA CYS LEU LEU PRO LYS LEU ASP GLU SEQRES 15 A 581 LEU ARG ASP GLU GLY LYS ALA SER SER ALA LYS GLN ARG SEQRES 16 A 581 LEU LYS CYS ALA SER LEU GLN LYS PHE GLY GLU ARG ALA SEQRES 17 A 581 PHE LYS ALA TRP ALA VAL ALA ARG LEU SER GLN ARG PHE SEQRES 18 A 581 PRO LYS ALA GLU PHE ALA GLU VAL SER LYS LEU VAL THR SEQRES 19 A 581 ASP LEU THR LYS VAL HIS THR GLU CYS CYS HIS GLY ASP SEQRES 20 A 581 LEU LEU GLU CYS ALA ASP ASP ARG ALA ASP LEU ALA LYS SEQRES 21 A 581 TYR ILE CYS GLU ASN GLN ASP SER ILE SER SER LYS LEU SEQRES 22 A 581 LYS GLU CYS CYS GLU LYS PRO LEU LEU GLU LYS SER HIS SEQRES 23 A 581 CYS ILE ALA GLU VAL GLU ASN ASP GLU MET PRO ALA ASP SEQRES 24 A 581 LEU PRO SER LEU ALA ALA ASP PHE VAL GLU SER LYS ASP SEQRES 25 A 581 VAL CYS LYS ASN TYR ALA GLU ALA LYS ASP VAL PHE LEU SEQRES 26 A 581 GLY MET PHE LEU TYR GLU TYR ALA ARG ARG HIS PRO ASP SEQRES 27 A 581 TYR SER VAL VAL LEU LEU LEU ARG LEU ALA LYS THR TYR SEQRES 28 A 581 GLU THR THR LEU GLU LYS CYS CYS ALA ALA ALA ASP PRO SEQRES 29 A 581 HIS GLU CYS TYR ALA LYS VAL PHE ASP GLU PHE LYS PRO SEQRES 30 A 581 LEU VAL GLU GLU PRO GLN ASN LEU ILE LYS GLN ASN CYS SEQRES 31 A 581 GLU LEU PHE GLU GLN LEU GLY GLU TYR LYS PHE GLN ASN SEQRES 32 A 581 ALA LEU LEU VAL ARG TYR THR LYS LYS VAL PRO GLN VAL SEQRES 33 A 581 SER THR PRO THR LEU VAL GLU VAL SER ARG ASN LEU GLY SEQRES 34 A 581 LYS VAL GLY SER LYS CYS CYS LYS HIS PRO GLU ALA LYS SEQRES 35 A 581 ARG MET PRO CYS ALA GLU ASP TYR LEU SER VAL VAL LEU SEQRES 36 A 581 ASN GLN LEU CYS VAL LEU HIS GLU LYS THR PRO VAL SER SEQRES 37 A 581 ASP ARG VAL THR LYS CYS CYS THR GLU SER LEU VAL ASN SEQRES 38 A 581 ARG ARG PRO CYS PHE SER ALA LEU GLU VAL ASP GLU THR SEQRES 39 A 581 TYR VAL PRO LYS GLU PHE ASN ALA GLU THR PHE THR PHE SEQRES 40 A 581 HIS ALA ASP ILE CYS THR LEU SER GLU LYS GLU ARG GLN SEQRES 41 A 581 ILE LYS LYS GLN THR ALA LEU VAL GLU LEU VAL LYS HIS SEQRES 42 A 581 LYS PRO LYS ALA THR LYS GLU GLN LEU LYS ALA VAL MET SEQRES 43 A 581 ASP ASP PHE ALA ALA PHE VAL GLU LYS CYS CYS LYS ALA SEQRES 44 A 581 ASP ASP LYS GLU THR CYS PHE ALA GLU GLU GLY LYS LYS SEQRES 45 A 581 LEU VAL ALA ALA SER GLN ALA ALA LEU SEQRES 1 B 581 HIS LYS SER GLU VAL ALA HIS ARG PHE LYS ASP LEU GLY SEQRES 2 B 581 GLU GLU ASN PHE LYS ALA LEU VAL LEU ILE ALA PHE ALA SEQRES 3 B 581 GLN TYR LEU GLN GLN CYS PRO PHE GLU ASP HIS VAL LYS SEQRES 4 B 581 LEU VAL ASN GLU VAL THR GLU PHE ALA LYS THR CYS VAL SEQRES 5 B 581 ALA ASP GLU SER ALA GLU ASN CYS ASP LYS SER LEU HIS SEQRES 6 B 581 THR LEU PHE GLY ASP LYS LEU CYS THR VAL ALA THR LEU SEQRES 7 B 581 ARG GLU THR TYR GLY GLU MET ALA ASP CYS CYS ALA LYS SEQRES 8 B 581 GLN GLU PRO GLU ARG ASN GLU CYS PHE LEU GLN HIS LYS SEQRES 9 B 581 ASP ASP ASN PRO ASN LEU PRO ARG LEU VAL ARG PRO GLU SEQRES 10 B 581 VAL ASP VAL MET CYS THR ALA PHE HIS ASP ASN GLU GLU SEQRES 11 B 581 THR PHE LEU LYS LYS TYR LEU TYR GLU ILE ALA ARG ARG SEQRES 12 B 581 HIS PRO TYR PHE TYR ALA PRO GLU LEU LEU PHE PHE ALA SEQRES 13 B 581 LYS ARG TYR LYS ALA ALA PHE THR GLU CYS CYS GLN ALA SEQRES 14 B 581 ALA ASP LYS ALA ALA CYS LEU LEU PRO LYS LEU ASP GLU SEQRES 15 B 581 LEU ARG ASP GLU GLY LYS ALA SER SER ALA LYS GLN ARG SEQRES 16 B 581 LEU LYS CYS ALA SER LEU GLN LYS PHE GLY GLU ARG ALA SEQRES 17 B 581 PHE LYS ALA TRP ALA VAL ALA ARG LEU SER GLN ARG PHE SEQRES 18 B 581 PRO LYS ALA GLU PHE ALA GLU VAL SER LYS LEU VAL THR SEQRES 19 B 581 ASP LEU THR LYS VAL HIS THR GLU CYS CYS HIS GLY ASP SEQRES 20 B 581 LEU LEU GLU CYS ALA ASP ASP ARG ALA ASP LEU ALA LYS SEQRES 21 B 581 TYR ILE CYS GLU ASN GLN ASP SER ILE SER SER LYS LEU SEQRES 22 B 581 LYS GLU CYS CYS GLU LYS PRO LEU LEU GLU LYS SER HIS SEQRES 23 B 581 CYS ILE ALA GLU VAL GLU ASN ASP GLU MET PRO ALA ASP SEQRES 24 B 581 LEU PRO SER LEU ALA ALA ASP PHE VAL GLU SER LYS ASP SEQRES 25 B 581 VAL CYS LYS ASN TYR ALA GLU ALA LYS ASP VAL PHE LEU SEQRES 26 B 581 GLY MET PHE LEU TYR GLU TYR ALA ARG ARG HIS PRO ASP SEQRES 27 B 581 TYR SER VAL VAL LEU LEU LEU ARG LEU ALA LYS THR TYR SEQRES 28 B 581 GLU THR THR LEU GLU LYS CYS CYS ALA ALA ALA ASP PRO SEQRES 29 B 581 HIS GLU CYS TYR ALA LYS VAL PHE ASP GLU PHE LYS PRO SEQRES 30 B 581 LEU VAL GLU GLU PRO GLN ASN LEU ILE LYS GLN ASN CYS SEQRES 31 B 581 GLU LEU PHE GLU GLN LEU GLY GLU TYR LYS PHE GLN ASN SEQRES 32 B 581 ALA LEU LEU VAL ARG TYR THR LYS LYS VAL PRO GLN VAL SEQRES 33 B 581 SER THR PRO THR LEU VAL GLU VAL SER ARG ASN LEU GLY SEQRES 34 B 581 LYS VAL GLY SER LYS CYS CYS LYS HIS PRO GLU ALA LYS SEQRES 35 B 581 ARG MET PRO CYS ALA GLU ASP TYR LEU SER VAL VAL LEU SEQRES 36 B 581 ASN GLN LEU CYS VAL LEU HIS GLU LYS THR PRO VAL SER SEQRES 37 B 581 ASP ARG VAL THR LYS CYS CYS THR GLU SER LEU VAL ASN SEQRES 38 B 581 ARG ARG PRO CYS PHE SER ALA LEU GLU VAL ASP GLU THR SEQRES 39 B 581 TYR VAL PRO LYS GLU PHE ASN ALA GLU THR PHE THR PHE SEQRES 40 B 581 HIS ALA ASP ILE CYS THR LEU SER GLU LYS GLU ARG GLN SEQRES 41 B 581 ILE LYS LYS GLN THR ALA LEU VAL GLU LEU VAL LYS HIS SEQRES 42 B 581 LYS PRO LYS ALA THR LYS GLU GLN LEU LYS ALA VAL MET SEQRES 43 B 581 ASP ASP PHE ALA ALA PHE VAL GLU LYS CYS CYS LYS ALA SEQRES 44 B 581 ASP ASP LYS GLU THR CYS PHE ALA GLU GLU GLY LYS LYS SEQRES 45 B 581 LEU VAL ALA ALA SER GLN ALA ALA LEU HET PLM A 601 13 HET PLM A 602 18 HET PLM A 603 17 HET PLM A 604 18 HET PLM A 605 17 HET PLM A 606 18 HET PLM A 607 18 HET 8ZR A 608 29 HET PLM B 601 13 HET PLM B 602 18 HET PLM B 603 17 HET PLM B 604 18 HET PLM B 605 17 HET PLM B 606 18 HET PLM B 607 18 HET 8ZR B 608 29 HETNAM PLM PALMITIC ACID HETNAM 8ZR ~{N},~{N},12-TRIMETHYL-3$L^{3}-THIA-1$L^{4},5,6$L^{4}- HETNAM 2 8ZR TRIAZA-2$L^{3}-CUPRATRICYCLO[6.4.0.0^{2,6}]DODECA- HETNAM 3 8ZR 1(8),3,6,9,11-PENTAEN-4-AMINE FORMUL 3 PLM 14(C16 H32 O2) FORMUL 10 8ZR 2(C10 H14 CU N4 S) FORMUL 19 HOH *36(H2 O) HELIX 1 AA1 SER A 5 GLY A 15 1 11 HELIX 2 AA2 GLY A 15 LEU A 31 1 17 HELIX 3 AA3 PRO A 35 ASP A 56 1 22 HELIX 4 AA4 SER A 65 CYS A 75 1 11 HELIX 5 AA5 THR A 79 GLY A 85 1 7 HELIX 6 AA6 GLU A 86 LYS A 93 5 8 HELIX 7 AA7 GLN A 94 HIS A 105 1 12 HELIX 8 AA8 GLU A 119 ASN A 130 1 12 HELIX 9 AA9 ASN A 130 ARG A 144 1 15 HELIX 10 AB1 TYR A 150 CYS A 169 1 20 HELIX 11 AB2 ASP A 173 PHE A 223 1 51 HELIX 12 AB3 GLU A 227 GLY A 248 1 22 HELIX 13 AB4 ASP A 249 ASN A 267 1 19 HELIX 14 AB5 GLN A 268 ILE A 271 5 4 HELIX 15 AB6 GLU A 277 LYS A 281 5 5 HELIX 16 AB7 PRO A 282 VAL A 293 1 12 HELIX 17 AB8 LEU A 305 VAL A 310 1 6 HELIX 18 AB9 ASP A 314 ALA A 322 1 9 HELIX 19 AC1 ALA A 322 HIS A 338 1 17 HELIX 20 AC2 SER A 342 CYS A 361 1 20 HELIX 21 AC3 ASP A 365 TYR A 370 1 6 HELIX 22 AC4 VAL A 373 ASP A 375 5 3 HELIX 23 AC5 GLU A 376 LEU A 398 1 23 HELIX 24 AC6 GLY A 399 VAL A 415 1 17 HELIX 25 AC7 SER A 419 CYS A 438 1 20 HELIX 26 AC8 LYS A 439 HIS A 440 5 2 HELIX 27 AC9 PRO A 441 ALA A 443 5 3 HELIX 28 AD1 LYS A 444 THR A 467 1 24 HELIX 29 AD2 SER A 470 GLU A 479 1 10 HELIX 30 AD3 ASN A 483 ALA A 490 1 8 HELIX 31 AD4 ALA A 504 THR A 508 5 5 HELIX 32 AD5 HIS A 510 LEU A 516 5 7 HELIX 33 AD6 SER A 517 LYS A 536 1 20 HELIX 34 AD7 THR A 540 CYS A 559 1 20 HELIX 35 AD8 ASP A 563 LEU A 583 1 21 HELIX 36 AD9 SER B 5 GLY B 15 1 11 HELIX 37 AE1 GLY B 15 LEU B 31 1 17 HELIX 38 AE2 PRO B 35 ASP B 56 1 22 HELIX 39 AE3 SER B 65 CYS B 75 1 11 HELIX 40 AE4 THR B 79 GLY B 85 1 7 HELIX 41 AE5 GLY B 85 CYS B 90 1 6 HELIX 42 AE6 CYS B 91 LYS B 93 5 3 HELIX 43 AE7 GLN B 94 HIS B 105 1 12 HELIX 44 AE8 GLU B 119 ASN B 130 1 12 HELIX 45 AE9 ASN B 130 ARG B 144 1 15 HELIX 46 AF1 TYR B 150 CYS B 169 1 20 HELIX 47 AF2 ASP B 173 PHE B 223 1 51 HELIX 48 AF3 GLU B 227 GLY B 248 1 22 HELIX 49 AF4 ASP B 249 ASN B 267 1 19 HELIX 50 AF5 GLN B 268 ILE B 271 5 4 HELIX 51 AF6 GLU B 277 LYS B 281 5 5 HELIX 52 AF7 PRO B 282 VAL B 293 1 12 HELIX 53 AF8 LEU B 305 VAL B 310 1 6 HELIX 54 AF9 ASP B 314 ALA B 322 1 9 HELIX 55 AG1 ALA B 322 HIS B 338 1 17 HELIX 56 AG2 SER B 342 CYS B 361 1 20 HELIX 57 AG3 ASP B 365 TYR B 370 1 6 HELIX 58 AG4 VAL B 373 ASP B 375 5 3 HELIX 59 AG5 GLU B 376 LEU B 398 1 23 HELIX 60 AG6 GLY B 399 VAL B 415 1 17 HELIX 61 AG7 SER B 419 CYS B 438 1 20 HELIX 62 AG8 LYS B 439 HIS B 440 5 2 HELIX 63 AG9 PRO B 441 ALA B 443 5 3 HELIX 64 AH1 LYS B 444 THR B 467 1 24 HELIX 65 AH2 SER B 470 GLU B 479 1 10 HELIX 66 AH3 ASN B 483 ALA B 490 1 8 HELIX 67 AH4 ALA B 504 THR B 508 5 5 HELIX 68 AH5 HIS B 510 LEU B 516 5 7 HELIX 69 AH6 SER B 517 LYS B 536 1 20 HELIX 70 AH7 THR B 540 CYS B 559 1 20 HELIX 71 AH8 ASP B 563 LEU B 583 1 21 SSBOND 1 CYS A 53 CYS A 62 1555 1555 2.03 SSBOND 2 CYS A 75 CYS A 91 1555 1555 2.05 SSBOND 3 CYS A 90 CYS A 101 1555 1555 2.06 SSBOND 4 CYS A 124 CYS A 169 1555 1555 2.05 SSBOND 5 CYS A 168 CYS A 177 1555 1555 2.04 SSBOND 6 CYS A 200 CYS A 246 1555 1555 2.02 SSBOND 7 CYS A 245 CYS A 253 1555 1555 2.03 SSBOND 8 CYS A 265 CYS A 279 1555 1555 2.02 SSBOND 9 CYS A 278 CYS A 289 1555 1555 2.04 SSBOND 10 CYS A 316 CYS A 361 1555 1555 2.03 SSBOND 11 CYS A 360 CYS A 369 1555 1555 2.04 SSBOND 12 CYS A 392 CYS A 438 1555 1555 2.04 SSBOND 13 CYS A 437 CYS A 448 1555 1555 2.04 SSBOND 14 CYS A 461 CYS A 477 1555 1555 2.04 SSBOND 15 CYS A 476 CYS A 487 1555 1555 2.06 SSBOND 16 CYS A 514 CYS A 559 1555 1555 2.04 SSBOND 17 CYS A 558 CYS A 567 1555 1555 2.04 SSBOND 18 CYS B 53 CYS B 62 1555 1555 2.03 SSBOND 19 CYS B 75 CYS B 91 1555 1555 2.05 SSBOND 20 CYS B 90 CYS B 101 1555 1555 2.06 SSBOND 21 CYS B 124 CYS B 169 1555 1555 2.04 SSBOND 22 CYS B 168 CYS B 177 1555 1555 2.04 SSBOND 23 CYS B 200 CYS B 246 1555 1555 2.03 SSBOND 24 CYS B 245 CYS B 253 1555 1555 2.03 SSBOND 25 CYS B 265 CYS B 279 1555 1555 2.03 SSBOND 26 CYS B 278 CYS B 289 1555 1555 2.04 SSBOND 27 CYS B 316 CYS B 361 1555 1555 2.04 SSBOND 28 CYS B 360 CYS B 369 1555 1555 2.04 SSBOND 29 CYS B 392 CYS B 438 1555 1555 2.04 SSBOND 30 CYS B 437 CYS B 448 1555 1555 2.04 SSBOND 31 CYS B 461 CYS B 477 1555 1555 2.04 SSBOND 32 CYS B 476 CYS B 487 1555 1555 2.05 SSBOND 33 CYS B 514 CYS B 559 1555 1555 2.04 SSBOND 34 CYS B 558 CYS B 567 1555 1555 2.04 LINK NE2 HIS A 146 CU1 8ZR A 608 1555 1555 2.48 LINK NE2 HIS B 146 CU1 8ZR B 608 1555 1555 2.50 SITE 1 AC1 6 ARG A 117 LEU A 135 TYR A 138 LEU A 139 SITE 2 AC1 6 TYR A 161 ARG A 186 SITE 1 AC2 7 VAL A 46 LEU A 66 TYR A 150 LEU A 251 SITE 2 AC2 7 ARG A 257 LEU A 283 SER A 287 SITE 1 AC3 6 SER A 342 VAL A 344 ARG A 348 LEU A 453 SITE 2 AC3 6 ARG A 485 PLM A 604 SITE 1 AC4 7 TYR A 411 VAL A 418 LEU A 457 LEU A 460 SITE 2 AC4 7 HIS A 464 SER A 489 PLM A 603 SITE 1 AC5 8 TYR A 401 LYS A 525 ALA A 528 LEU A 529 SITE 2 AC5 8 VAL A 547 MET A 548 PHE A 551 SER A 579 SITE 1 AC6 4 ALA A 210 ASP A 324 LYS A 351 HOH A 707 SITE 1 AC7 8 LYS A 199 LEU A 219 HIS A 242 ARG A 257 SITE 2 AC7 8 LEU A 260 ILE A 264 SER A 287 ILE A 290 SITE 1 AC8 5 LEU A 115 ILE A 142 ARG A 145 HIS A 146 SITE 2 AC8 5 GLY A 189 SITE 1 AC9 5 ARG B 117 TYR B 138 TYR B 161 PHE B 165 SITE 2 AC9 5 ARG B 186 SITE 1 AD1 8 LEU B 66 PHE B 70 TYR B 150 LEU B 251 SITE 2 AD1 8 ARG B 257 ALA B 258 LEU B 283 SER B 287 SITE 1 AD2 7 SER B 342 VAL B 344 ARG B 348 LEU B 387 SITE 2 AD2 7 LEU B 453 ARG B 485 PLM B 604 SITE 1 AD3 6 TYR B 411 VAL B 418 LEU B 460 HIS B 464 SITE 2 AD3 6 SER B 489 PLM B 603 SITE 1 AD4 10 TYR B 401 ASN B 405 PHE B 507 LYS B 525 SITE 2 AD4 10 LEU B 532 VAL B 547 PHE B 551 ALA B 552 SITE 3 AD4 10 SER B 579 GLN B 580 SITE 1 AD5 3 ALA B 210 ASP B 324 LYS B 351 SITE 1 AD6 9 LYS B 199 TRP B 214 LEU B 219 HIS B 242 SITE 2 AD6 9 ARG B 257 LEU B 260 ILE B 264 SER B 287 SITE 3 AD6 9 ILE B 290 SITE 1 AD7 4 LEU B 115 HIS B 146 GLY B 189 SER B 193 CRYST1 38.492 95.653 96.642 104.67 101.43 89.97 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025979 -0.000015 0.005433 0.00000 SCALE2 0.000000 0.010454 0.002796 0.00000 SCALE3 0.000000 0.000000 0.010928 0.00000