data_5YBD # _entry.id 5YBD # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5YBD pdb_00005ybd 10.2210/pdb5ybd/pdb WWPDB D_1300004960 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2018-11-14 2 'Structure model' 1 1 2024-03-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Data collection' 3 2 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' database_2 4 2 'Structure model' pdbx_unobs_or_zero_occ_atoms # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5YBD _pdbx_database_status.recvd_initial_deposition_date 2017-09-04 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Saxena, A.K.' 1 ? 'Gangwar, S.P.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Acta Crystallogr F Struct Biol Commun' _citation.journal_id_ASTM ACSFEN _citation.journal_id_CSD ? _citation.journal_id_ISSN 2053-230X _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 74 _citation.language ? _citation.page_first 656 _citation.page_last 663 _citation.title 'Comparative structure analysis of the ETSi domain of ERG3 and its complex with the E74 promoter DNA sequence' _citation.year 2018 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1107/S2053230X1801110X _citation.pdbx_database_id_PubMed 30279318 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Sharma, R.' 1 ? primary 'Gangwar, S.P.' 2 ? primary 'Saxena, A.K.' 3 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Transcriptional regulator ERG' 11651.133 2 ? ? 'ETS domain, UNP residues 317-406' ? 2 polymer syn ;DNA (5'-D(P*AP*CP*CP*GP*GP*AP*AP*GP*T)-3') ; 2764.837 2 ? ? ? ? 3 polymer syn ;DNA (5'-D(P*CP*AP*CP*TP*TP*CP*CP*GP*GP*T)-3') ; 2995.967 2 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Transforming protein ERG' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;QIQLWQFLLELLSDSSNSSCITWEGTNGEFKMTDPDEVARRWGERKSKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAYK FDFHGIAQALLEHHHHH ; ;QIQLWQFLLELLSDSSNSSCITWEGTNGEFKMTDPDEVARRWGERKSKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAYK FDFHGIAQALLEHHHHH ; A,X ? 2 polydeoxyribonucleotide no no '(DA)(DC)(DC)(DG)(DG)(DA)(DA)(DG)(DT)' ACCGGAAGT B,Y ? 3 polydeoxyribonucleotide no no '(DC)(DA)(DC)(DT)(DT)(DC)(DC)(DG)(DG)(DT)' CACTTCCGGT C,Z ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLN n 1 2 ILE n 1 3 GLN n 1 4 LEU n 1 5 TRP n 1 6 GLN n 1 7 PHE n 1 8 LEU n 1 9 LEU n 1 10 GLU n 1 11 LEU n 1 12 LEU n 1 13 SER n 1 14 ASP n 1 15 SER n 1 16 SER n 1 17 ASN n 1 18 SER n 1 19 SER n 1 20 CYS n 1 21 ILE n 1 22 THR n 1 23 TRP n 1 24 GLU n 1 25 GLY n 1 26 THR n 1 27 ASN n 1 28 GLY n 1 29 GLU n 1 30 PHE n 1 31 LYS n 1 32 MET n 1 33 THR n 1 34 ASP n 1 35 PRO n 1 36 ASP n 1 37 GLU n 1 38 VAL n 1 39 ALA n 1 40 ARG n 1 41 ARG n 1 42 TRP n 1 43 GLY n 1 44 GLU n 1 45 ARG n 1 46 LYS n 1 47 SER n 1 48 LYS n 1 49 PRO n 1 50 ASN n 1 51 MET n 1 52 ASN n 1 53 TYR n 1 54 ASP n 1 55 LYS n 1 56 LEU n 1 57 SER n 1 58 ARG n 1 59 ALA n 1 60 LEU n 1 61 ARG n 1 62 TYR n 1 63 TYR n 1 64 TYR n 1 65 ASP n 1 66 LYS n 1 67 ASN n 1 68 ILE n 1 69 MET n 1 70 THR n 1 71 LYS n 1 72 VAL n 1 73 HIS n 1 74 GLY n 1 75 LYS n 1 76 ARG n 1 77 TYR n 1 78 ALA n 1 79 TYR n 1 80 LYS n 1 81 PHE n 1 82 ASP n 1 83 PHE n 1 84 HIS n 1 85 GLY n 1 86 ILE n 1 87 ALA n 1 88 GLN n 1 89 ALA n 1 90 LEU n 1 91 LEU n 1 92 GLU n 1 93 HIS n 1 94 HIS n 1 95 HIS n 1 96 HIS n 1 97 HIS n 2 1 DA n 2 2 DC n 2 3 DC n 2 4 DG n 2 5 DG n 2 6 DA n 2 7 DA n 2 8 DG n 2 9 DT n 3 1 DC n 3 2 DA n 3 3 DC n 3 4 DT n 3 5 DT n 3 6 DC n 3 7 DC n 3 8 DG n 3 9 DG n 3 10 DT n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 97 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ERG _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Enterobacteria phage L1' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 268588 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21 _entity_src_gen.pdbx_host_org_variant DE3 _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell 'Homo sapiens' _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type 'bacterial expression' _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'pET21a(+)' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 2 1 sample 1 9 'Drosophila saltans' ? 7273 ? 3 1 sample 1 10 'Drosophila adunca' ? 46893 ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLN 1 310 ? ? ? A . n A 1 2 ILE 2 311 311 ILE ILE A . n A 1 3 GLN 3 312 312 GLN GLN A . n A 1 4 LEU 4 313 313 LEU LEU A . n A 1 5 TRP 5 314 314 TRP TRP A . n A 1 6 GLN 6 315 315 GLN GLN A . n A 1 7 PHE 7 316 316 PHE PHE A . n A 1 8 LEU 8 317 317 LEU LEU A . n A 1 9 LEU 9 318 318 LEU LEU A . n A 1 10 GLU 10 319 319 GLU GLU A . n A 1 11 LEU 11 320 320 LEU LEU A . n A 1 12 LEU 12 321 321 LEU LEU A . n A 1 13 SER 13 322 322 SER SER A . n A 1 14 ASP 14 323 323 ASP ASP A . n A 1 15 SER 15 324 324 SER SER A . n A 1 16 SER 16 325 325 SER SER A . n A 1 17 ASN 17 326 326 ASN ASN A . n A 1 18 SER 18 327 327 SER SER A . n A 1 19 SER 19 328 328 SER SER A . n A 1 20 CYS 20 329 329 CYS CYS A . n A 1 21 ILE 21 330 330 ILE ILE A . n A 1 22 THR 22 331 331 THR THR A . n A 1 23 TRP 23 332 332 TRP TRP A . n A 1 24 GLU 24 333 333 GLU GLU A . n A 1 25 GLY 25 334 334 GLY GLY A . n A 1 26 THR 26 335 335 THR THR A . n A 1 27 ASN 27 336 336 ASN ASN A . n A 1 28 GLY 28 337 337 GLY GLY A . n A 1 29 GLU 29 338 338 GLU GLU A . n A 1 30 PHE 30 339 339 PHE PHE A . n A 1 31 LYS 31 340 340 LYS LYS A . n A 1 32 MET 32 341 341 MET MET A . n A 1 33 THR 33 342 342 THR THR A . n A 1 34 ASP 34 343 343 ASP ASP A . n A 1 35 PRO 35 344 344 PRO PRO A . n A 1 36 ASP 36 345 345 ASP ASP A . n A 1 37 GLU 37 346 346 GLU GLU A . n A 1 38 VAL 38 347 347 VAL VAL A . n A 1 39 ALA 39 348 348 ALA ALA A . n A 1 40 ARG 40 349 349 ARG ARG A . n A 1 41 ARG 41 350 350 ARG ARG A . n A 1 42 TRP 42 351 351 TRP TRP A . n A 1 43 GLY 43 352 352 GLY GLY A . n A 1 44 GLU 44 353 353 GLU GLU A . n A 1 45 ARG 45 354 354 ARG ARG A . n A 1 46 LYS 46 355 355 LYS LYS A . n A 1 47 SER 47 356 356 SER SER A . n A 1 48 LYS 48 357 357 LYS LYS A . n A 1 49 PRO 49 358 358 PRO PRO A . n A 1 50 ASN 50 359 359 ASN ASN A . n A 1 51 MET 51 360 360 MET MET A . n A 1 52 ASN 52 361 361 ASN ASN A . n A 1 53 TYR 53 362 362 TYR TYR A . n A 1 54 ASP 54 363 363 ASP ASP A . n A 1 55 LYS 55 364 364 LYS LYS A . n A 1 56 LEU 56 365 365 LEU LEU A . n A 1 57 SER 57 366 366 SER SER A . n A 1 58 ARG 58 367 367 ARG ARG A . n A 1 59 ALA 59 368 368 ALA ALA A . n A 1 60 LEU 60 369 369 LEU LEU A . n A 1 61 ARG 61 370 370 ARG ARG A . n A 1 62 TYR 62 371 371 TYR TYR A . n A 1 63 TYR 63 372 372 TYR TYR A . n A 1 64 TYR 64 373 373 TYR TYR A . n A 1 65 ASP 65 374 374 ASP ASP A . n A 1 66 LYS 66 375 375 LYS LYS A . n A 1 67 ASN 67 376 376 ASN ASN A . n A 1 68 ILE 68 377 377 ILE ILE A . n A 1 69 MET 69 378 378 MET MET A . n A 1 70 THR 70 379 379 THR THR A . n A 1 71 LYS 71 380 380 LYS LYS A . n A 1 72 VAL 72 381 381 VAL VAL A . n A 1 73 HIS 73 382 382 HIS HIS A . n A 1 74 GLY 74 383 383 GLY GLY A . n A 1 75 LYS 75 384 384 LYS LYS A . n A 1 76 ARG 76 385 385 ARG ARG A . n A 1 77 TYR 77 386 386 TYR TYR A . n A 1 78 ALA 78 387 387 ALA ALA A . n A 1 79 TYR 79 388 388 TYR TYR A . n A 1 80 LYS 80 389 389 LYS LYS A . n A 1 81 PHE 81 390 390 PHE PHE A . n A 1 82 ASP 82 391 391 ASP ASP A . n A 1 83 PHE 83 392 392 PHE PHE A . n A 1 84 HIS 84 393 393 HIS HIS A . n A 1 85 GLY 85 394 394 GLY GLY A . n A 1 86 ILE 86 395 395 ILE ILE A . n A 1 87 ALA 87 396 396 ALA ALA A . n A 1 88 GLN 88 397 397 GLN GLN A . n A 1 89 ALA 89 398 398 ALA ALA A . n A 1 90 LEU 90 399 399 LEU LEU A . n A 1 91 LEU 91 400 400 LEU LEU A . n A 1 92 GLU 92 401 401 GLU GLU A . n A 1 93 HIS 93 402 402 HIS HIS A . n A 1 94 HIS 94 403 403 HIS HIS A . n A 1 95 HIS 95 404 404 HIS HIS A . n A 1 96 HIS 96 405 405 HIS HIS A . n A 1 97 HIS 97 406 406 HIS HIS A . n B 2 1 DA 1 2 2 DA DA B . n B 2 2 DC 2 3 3 DC DC B . n B 2 3 DC 3 4 4 DC DC B . n B 2 4 DG 4 5 5 DG DG B . n B 2 5 DG 5 6 6 DG DG B . n B 2 6 DA 6 7 7 DA DA B . n B 2 7 DA 7 8 8 DA DA B . n B 2 8 DG 8 9 9 DG DG B . n B 2 9 DT 9 10 10 DT DT B . n C 3 1 DC 1 14 14 DC DC C . n C 3 2 DA 2 15 15 DA DA C . n C 3 3 DC 3 16 16 DC DC C . n C 3 4 DT 4 17 17 DT DT C . n C 3 5 DT 5 18 18 DT DT C . n C 3 6 DC 6 19 19 DC DC C . n C 3 7 DC 7 20 20 DC DC C . n C 3 8 DG 8 21 21 DG DG C . n C 3 9 DG 9 22 22 DG DG C . n C 3 10 DT 10 23 23 DT DT C . n D 1 1 GLN 1 310 310 GLN GLN X . n D 1 2 ILE 2 311 311 ILE ILE X . n D 1 3 GLN 3 312 312 GLN GLN X . n D 1 4 LEU 4 313 313 LEU LEU X . n D 1 5 TRP 5 314 314 TRP TRP X . n D 1 6 GLN 6 315 315 GLN GLN X . n D 1 7 PHE 7 316 316 PHE PHE X . n D 1 8 LEU 8 317 317 LEU LEU X . n D 1 9 LEU 9 318 318 LEU LEU X . n D 1 10 GLU 10 319 319 GLU GLU X . n D 1 11 LEU 11 320 320 LEU LEU X . n D 1 12 LEU 12 321 321 LEU LEU X . n D 1 13 SER 13 322 322 SER SER X . n D 1 14 ASP 14 323 323 ASP ASP X . n D 1 15 SER 15 324 324 SER SER X . n D 1 16 SER 16 325 325 SER SER X . n D 1 17 ASN 17 326 326 ASN ASN X . n D 1 18 SER 18 327 327 SER SER X . n D 1 19 SER 19 328 328 SER SER X . n D 1 20 CYS 20 329 329 CYS CYS X . n D 1 21 ILE 21 330 330 ILE ILE X . n D 1 22 THR 22 331 331 THR THR X . n D 1 23 TRP 23 332 332 TRP TRP X . n D 1 24 GLU 24 333 333 GLU GLU X . n D 1 25 GLY 25 334 334 GLY GLY X . n D 1 26 THR 26 335 335 THR THR X . n D 1 27 ASN 27 336 336 ASN ASN X . n D 1 28 GLY 28 337 337 GLY GLY X . n D 1 29 GLU 29 338 338 GLU GLU X . n D 1 30 PHE 30 339 339 PHE PHE X . n D 1 31 LYS 31 340 340 LYS LYS X . n D 1 32 MET 32 341 341 MET MET X . n D 1 33 THR 33 342 342 THR THR X . n D 1 34 ASP 34 343 343 ASP ASP X . n D 1 35 PRO 35 344 344 PRO PRO X . n D 1 36 ASP 36 345 345 ASP ASP X . n D 1 37 GLU 37 346 346 GLU GLU X . n D 1 38 VAL 38 347 347 VAL VAL X . n D 1 39 ALA 39 348 348 ALA ALA X . n D 1 40 ARG 40 349 349 ARG ARG X . n D 1 41 ARG 41 350 350 ARG ARG X . n D 1 42 TRP 42 351 351 TRP TRP X . n D 1 43 GLY 43 352 352 GLY GLY X . n D 1 44 GLU 44 353 353 GLU GLU X . n D 1 45 ARG 45 354 354 ARG ARG X . n D 1 46 LYS 46 355 355 LYS LYS X . n D 1 47 SER 47 356 356 SER SER X . n D 1 48 LYS 48 357 357 LYS LYS X . n D 1 49 PRO 49 358 358 PRO PRO X . n D 1 50 ASN 50 359 359 ASN ASN X . n D 1 51 MET 51 360 360 MET MET X . n D 1 52 ASN 52 361 361 ASN ASN X . n D 1 53 TYR 53 362 362 TYR TYR X . n D 1 54 ASP 54 363 363 ASP ASP X . n D 1 55 LYS 55 364 364 LYS LYS X . n D 1 56 LEU 56 365 365 LEU LEU X . n D 1 57 SER 57 366 366 SER SER X . n D 1 58 ARG 58 367 367 ARG ARG X . n D 1 59 ALA 59 368 368 ALA ALA X . n D 1 60 LEU 60 369 369 LEU LEU X . n D 1 61 ARG 61 370 370 ARG ARG X . n D 1 62 TYR 62 371 371 TYR TYR X . n D 1 63 TYR 63 372 372 TYR TYR X . n D 1 64 TYR 64 373 373 TYR TYR X . n D 1 65 ASP 65 374 374 ASP ASP X . n D 1 66 LYS 66 375 375 LYS LYS X . n D 1 67 ASN 67 376 376 ASN ASN X . n D 1 68 ILE 68 377 377 ILE ILE X . n D 1 69 MET 69 378 378 MET MET X . n D 1 70 THR 70 379 379 THR THR X . n D 1 71 LYS 71 380 380 LYS LYS X . n D 1 72 VAL 72 381 381 VAL VAL X . n D 1 73 HIS 73 382 382 HIS HIS X . n D 1 74 GLY 74 383 383 GLY GLY X . n D 1 75 LYS 75 384 384 LYS LYS X . n D 1 76 ARG 76 385 385 ARG ARG X . n D 1 77 TYR 77 386 386 TYR TYR X . n D 1 78 ALA 78 387 387 ALA ALA X . n D 1 79 TYR 79 388 388 TYR TYR X . n D 1 80 LYS 80 389 389 LYS LYS X . n D 1 81 PHE 81 390 390 PHE PHE X . n D 1 82 ASP 82 391 391 ASP ASP X . n D 1 83 PHE 83 392 392 PHE PHE X . n D 1 84 HIS 84 393 393 HIS HIS X . n D 1 85 GLY 85 394 394 GLY GLY X . n D 1 86 ILE 86 395 395 ILE ILE X . n D 1 87 ALA 87 396 396 ALA ALA X . n D 1 88 GLN 88 397 397 GLN GLN X . n D 1 89 ALA 89 398 398 ALA ALA X . n D 1 90 LEU 90 399 399 LEU LEU X . n D 1 91 LEU 91 400 400 LEU LEU X . n D 1 92 GLU 92 401 401 GLU GLU X . n D 1 93 HIS 93 402 402 HIS HIS X . n D 1 94 HIS 94 403 403 HIS HIS X . n D 1 95 HIS 95 404 ? ? ? X . n D 1 96 HIS 96 405 ? ? ? X . n D 1 97 HIS 97 406 ? ? ? X . n E 2 1 DA 1 2 2 DA DA Y . n E 2 2 DC 2 3 3 DC DC Y . n E 2 3 DC 3 4 4 DC DC Y . n E 2 4 DG 4 5 5 DG DG Y . n E 2 5 DG 5 6 6 DG DG Y . n E 2 6 DA 6 7 7 DA DA Y . n E 2 7 DA 7 8 8 DA DA Y . n E 2 8 DG 8 9 9 DG DG Y . n E 2 9 DT 9 10 10 DT DT Y . n F 3 1 DC 1 14 14 DC DC Z . n F 3 2 DA 2 15 15 DA DA Z . n F 3 3 DC 3 16 16 DC DC Z . n F 3 4 DT 4 17 17 DT DT Z . n F 3 5 DT 5 18 18 DT DT Z . n F 3 6 DC 6 19 19 DC DC Z . n F 3 7 DC 7 20 20 DC DC Z . n F 3 8 DG 8 21 21 DG DG Z . n F 3 9 DG 9 22 22 DG DG Z . n F 3 10 DT 10 23 23 DT DT Z . n # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 0 A LYS 340 ? CE ? A LYS 31 CE 2 1 Y 0 X LYS 340 ? CE ? D LYS 31 CE # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data collection' ? ? ? ? ? ? ? ? ? ? ? DENZO ? ? ? . 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? SCALEPACK ? ? ? . 2 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 3 ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.8.2_1309 4 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.15 5 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 5YBD _cell.details ? _cell.formula_units_Z ? _cell.length_a 39.279 _cell.length_a_esd ? _cell.length_b 233.871 _cell.length_b_esd ? _cell.length_c 80.524 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 16 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5YBD _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5YBD _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.68 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 54.04 _exptl_crystal.description 'rectangular plate' _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '20%(w/v) PEG4000, 200mM MgCl2 as precipitant solution' _exptl_crystal_grow.pdbx_pH_range 7.0-7.5 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details 'bent collimating mirror and toroid' _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'MARMOSAIC 225 mm CCD' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2013-08-10 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator 'Si(111)monochromator' _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97856 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'ESRF BEAMLINE BM14' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.97856 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BM14 _diffrn_source.pdbx_synchrotron_site ESRF # _reflns.B_iso_Wilson_estimate 54.120 _reflns.entry_id 5YBD _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.769 _reflns.d_resolution_low 50.000 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 9898 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F 0.0 _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.900 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 6.400 _reflns.pdbx_Rmerge_I_obs 0.078 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI 33.548 _reflns.pdbx_netI_over_sigmaI 11.700 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 1.681 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_R_split 2.770 2.820 ? ? ? ? ? ? ? 100.000 ? ? ? ? 0.456 ? ? ? ? ? ? ? ? 6.200 ? 0.796 ? ? ? ? ? 1 1 ? ? 2.820 2.870 ? ? ? ? ? ? ? 100.000 ? ? ? ? 0.415 ? ? ? ? ? ? ? ? 6.400 ? 0.796 ? ? ? ? ? 2 1 ? ? 2.870 2.920 ? ? ? ? ? ? ? 100.000 ? ? ? ? 0.355 ? ? ? ? ? ? ? ? 6.500 ? 0.874 ? ? ? ? ? 3 1 ? ? 2.920 2.980 ? ? ? ? ? ? ? 100.000 ? ? ? ? 0.304 ? ? ? ? ? ? ? ? 6.600 ? 0.828 ? ? ? ? ? 4 1 ? ? 2.980 3.050 ? ? ? ? ? ? ? 100.000 ? ? ? ? 0.264 ? ? ? ? ? ? ? ? 6.400 ? 0.853 ? ? ? ? ? 5 1 ? ? 3.050 3.120 ? ? ? ? ? ? ? 100.000 ? ? ? ? 0.172 ? ? ? ? ? ? ? ? 6.500 ? 1.009 ? ? ? ? ? 6 1 ? ? 3.120 3.200 ? ? ? ? ? ? ? 100.000 ? ? ? ? 0.116 ? ? ? ? ? ? ? ? 6.500 ? 1.062 ? ? ? ? ? 7 1 ? ? 3.200 3.280 ? ? ? ? ? ? ? 100.000 ? ? ? ? 0.088 ? ? ? ? ? ? ? ? 6.500 ? 1.165 ? ? ? ? ? 8 1 ? ? 3.280 3.380 ? ? ? ? ? ? ? 99.600 ? ? ? ? 0.086 ? ? ? ? ? ? ? ? 6.500 ? 1.322 ? ? ? ? ? 9 1 ? ? 3.380 3.490 ? ? ? ? ? ? ? 100.000 ? ? ? ? 0.077 ? ? ? ? ? ? ? ? 6.500 ? 1.344 ? ? ? ? ? 10 1 ? ? 3.490 3.610 ? ? ? ? ? ? ? 100.000 ? ? ? ? 0.079 ? ? ? ? ? ? ? ? 6.500 ? 1.349 ? ? ? ? ? 11 1 ? ? 3.610 3.760 ? ? ? ? ? ? ? 100.000 ? ? ? ? 0.076 ? ? ? ? ? ? ? ? 6.500 ? 1.454 ? ? ? ? ? 12 1 ? ? 3.760 3.930 ? ? ? ? ? ? ? 100.000 ? ? ? ? 0.076 ? ? ? ? ? ? ? ? 6.500 ? 1.834 ? ? ? ? ? 13 1 ? ? 3.930 4.140 ? ? ? ? ? ? ? 100.000 ? ? ? ? 0.064 ? ? ? ? ? ? ? ? 6.500 ? 1.892 ? ? ? ? ? 14 1 ? ? 4.140 4.400 ? ? ? ? ? ? ? 100.000 ? ? ? ? 0.060 ? ? ? ? ? ? ? ? 6.500 ? 1.925 ? ? ? ? ? 15 1 ? ? 4.400 4.740 ? ? ? ? ? ? ? 100.000 ? ? ? ? 0.059 ? ? ? ? ? ? ? ? 6.400 ? 2.193 ? ? ? ? ? 16 1 ? ? 4.740 5.210 ? ? ? ? ? ? ? 100.000 ? ? ? ? 0.063 ? ? ? ? ? ? ? ? 6.400 ? 2.330 ? ? ? ? ? 17 1 ? ? 5.210 5.960 ? ? ? ? ? ? ? 100.000 ? ? ? ? 0.066 ? ? ? ? ? ? ? ? 6.200 ? 3.109 ? ? ? ? ? 18 1 ? ? 5.960 7.510 ? ? ? ? ? ? ? 100.000 ? ? ? ? 0.061 ? ? ? ? ? ? ? ? 6.100 ? 3.124 ? ? ? ? ? 19 1 ? ? 7.510 50.000 ? ? ? ? ? ? ? 98.400 ? ? ? ? 0.058 ? ? ? ? ? ? ? ? 5.400 ? 4.469 ? ? ? ? ? 20 1 ? ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 170.910 _refine.B_iso_mean 37.0900 _refine.B_iso_min 14.940 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5YBD _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.7690 _refine.ls_d_res_low 38.9780 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 9861 _refine.ls_number_reflns_R_free 471 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.3100 _refine.ls_percent_reflns_R_free 4.7800 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2081 _refine.ls_R_factor_R_free 0.2816 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2044 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.360 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 31.9100 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.4200 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 2.7690 _refine_hist.d_res_low 38.9780 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 2379 _refine_hist.pdbx_number_residues_total 228 _refine_hist.pdbx_number_atoms_protein 1603 _refine_hist.pdbx_number_atoms_nucleic_acid 776 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.007 ? 2514 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.265 ? 3543 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.052 ? 370 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.005 ? 320 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 22.719 ? 977 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_restr_ncs.pdbx_ordinal _refine_ls_restr_ncs.pdbx_refine_id _refine_ls_restr_ncs.pdbx_ens_id _refine_ls_restr_ncs.dom_id _refine_ls_restr_ncs.pdbx_type _refine_ls_restr_ncs.pdbx_auth_asym_id _refine_ls_restr_ncs.pdbx_number _refine_ls_restr_ncs.pdbx_rms _refine_ls_restr_ncs.weight_position _refine_ls_restr_ncs.ncs_model_details _refine_ls_restr_ncs.rms_dev_position _refine_ls_restr_ncs.rms_dev_B_iso _refine_ls_restr_ncs.weight_B_iso _refine_ls_restr_ncs.pdbx_asym_id _refine_ls_restr_ncs.pdbx_weight 1 'X-RAY DIFFRACTION' 1 1 TORSIONAL A 903 7.975 ? ? ? ? ? ? ? 2 'X-RAY DIFFRACTION' 1 2 TORSIONAL X 903 7.975 ? ? ? ? ? ? ? 3 'X-RAY DIFFRACTION' 2 1 TORSIONAL B 174 7.975 ? ? ? ? ? ? ? 4 'X-RAY DIFFRACTION' 2 2 TORSIONAL Y 174 7.975 ? ? ? ? ? ? ? 5 'X-RAY DIFFRACTION' 3 1 TORSIONAL C 194 7.975 ? ? ? ? ? ? ? 6 'X-RAY DIFFRACTION' 3 2 TORSIONAL Z 194 7.975 ? ? ? ? ? ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 2.7685 3.1690 3186 . 168 3018 99.0000 . . . 0.3385 . 0.2416 . . . . . . 3 . . . 'X-RAY DIFFRACTION' 3.1690 3.9920 3261 . 148 3113 99.0000 . . . 0.2914 . 0.1987 . . . . . . 3 . . . 'X-RAY DIFFRACTION' 3.9920 38.9823 3414 . 155 3259 100.0000 . . . 0.2598 . 0.1980 . . . . . . 3 . . . # loop_ _struct_ncs_dom.pdbx_ens_id _struct_ncs_dom.id _struct_ncs_dom.details 1 1 'chain A and segid A' 1 2 'chain X and segid X' 2 1 'chain B and segid B' 2 2 'chain Y and segid Y' 3 1 'chain C and segid C' 3 2 'chain Z and segid Z' # loop_ _struct_ncs_dom_lim.pdbx_ens_id _struct_ncs_dom_lim.dom_id _struct_ncs_dom_lim.pdbx_component_id _struct_ncs_dom_lim.pdbx_refine_code _struct_ncs_dom_lim.beg_auth_asym_id _struct_ncs_dom_lim.beg_auth_seq_id _struct_ncs_dom_lim.end_auth_asym_id _struct_ncs_dom_lim.end_auth_seq_id _struct_ncs_dom_lim.selection_details _struct_ncs_dom_lim.beg_label_asym_id _struct_ncs_dom_lim.beg_label_comp_id _struct_ncs_dom_lim.beg_label_seq_id _struct_ncs_dom_lim.beg_label_alt_id _struct_ncs_dom_lim.end_label_asym_id _struct_ncs_dom_lim.end_label_comp_id _struct_ncs_dom_lim.end_label_seq_id _struct_ncs_dom_lim.end_label_alt_id _struct_ncs_dom_lim.beg_auth_comp_id _struct_ncs_dom_lim.end_auth_comp_id 1 1 1 ? A 0 A 0 'chain A and segid A' ? ? ? ? ? ? ? ? ? ? 1 2 1 ? X 0 X 0 'chain X and segid X' ? ? ? ? ? ? ? ? ? ? 2 1 1 ? B 0 B 0 'chain B and segid B' ? ? ? ? ? ? ? ? ? ? 2 2 1 ? Y 0 Y 0 'chain Y and segid Y' ? ? ? ? ? ? ? ? ? ? 3 1 1 ? C 0 C 0 'chain C and segid C' ? ? ? ? ? ? ? ? ? ? 3 2 1 ? Z 0 Z 0 'chain Z and segid Z' ? ? ? ? ? ? ? ? ? ? # loop_ _struct_ncs_ens.id _struct_ncs_ens.details 1 ? 2 ? 3 ? # _struct.entry_id 5YBD _struct.title 'X-ray structure of ETS domain of Ergp55 in complex with E74DNA' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5YBD _struct_keywords.text 'ETS transcription factor, human Ergp55, ETS-E74DNA complex, DNA BINDING PROTEIN-DNA complex, DNA BINDING PROTEIN' _struct_keywords.pdbx_keywords 'DNA BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 1 ? E N N 2 ? F N N 3 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP ERG_HUMAN P11308 ? 1 ;QIQLWQFLLELLSDSSNSSCITWEGTNGEFKMTDPDEVARRWGERKSKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAYK FDFHGIAQAL ; 317 2 PDB 5YBD 5YBD ? 2 ? 1 3 PDB 5YBD 5YBD ? 3 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5YBD A 1 ? 90 ? P11308 317 ? 406 ? 310 399 2 2 5YBD B 1 ? 9 ? 5YBD 2 ? 10 ? 2 10 3 3 5YBD C 1 ? 10 ? 5YBD 14 ? 23 ? 14 23 4 1 5YBD X 1 ? 90 ? P11308 317 ? 406 ? 310 399 5 2 5YBD Y 1 ? 9 ? 5YBD 2 ? 10 ? 2 10 6 3 5YBD Z 1 ? 10 ? 5YBD 14 ? 23 ? 14 23 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5YBD LEU A 91 ? UNP P11308 ? ? 'expression tag' 400 1 1 5YBD GLU A 92 ? UNP P11308 ? ? 'expression tag' 401 2 1 5YBD HIS A 93 ? UNP P11308 ? ? 'expression tag' 402 3 1 5YBD HIS A 94 ? UNP P11308 ? ? 'expression tag' 403 4 1 5YBD HIS A 95 ? UNP P11308 ? ? 'expression tag' 404 5 1 5YBD HIS A 96 ? UNP P11308 ? ? 'expression tag' 405 6 1 5YBD HIS A 97 ? UNP P11308 ? ? 'expression tag' 406 7 4 5YBD LEU X 91 ? UNP P11308 ? ? 'expression tag' 400 8 4 5YBD GLU X 92 ? UNP P11308 ? ? 'expression tag' 401 9 4 5YBD HIS X 93 ? UNP P11308 ? ? 'expression tag' 402 10 4 5YBD HIS X 94 ? UNP P11308 ? ? 'expression tag' 403 11 4 5YBD HIS X 95 ? UNP P11308 ? ? 'expression tag' 404 12 4 5YBD HIS X 96 ? UNP P11308 ? ? 'expression tag' 405 13 4 5YBD HIS X 97 ? UNP P11308 ? ? 'expression tag' 406 14 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA trimeric 3 2 author_and_software_defined_assembly PISA trimeric 3 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2610 ? 1 MORE -19 ? 1 'SSA (A^2)' 8450 ? 2 'ABSA (A^2)' 2680 ? 2 MORE -18 ? 2 'SSA (A^2)' 8250 ? # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C 2 1 D,E,F # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 GLN A 3 ? ASP A 14 ? GLN A 312 ASP A 323 1 ? 12 HELX_P HELX_P2 AA2 SER A 15 ? SER A 18 ? SER A 324 SER A 327 5 ? 4 HELX_P HELX_P3 AA3 ASP A 34 ? SER A 47 ? ASP A 343 SER A 356 1 ? 14 HELX_P HELX_P4 AA4 ASN A 52 ? LYS A 66 ? ASN A 361 LYS A 375 1 ? 15 HELX_P HELX_P5 AA5 ASP A 82 ? HIS A 97 ? ASP A 391 HIS A 406 1 ? 16 HELX_P HELX_P6 AA6 GLN D 3 ? ASP D 14 ? GLN X 312 ASP X 323 1 ? 12 HELX_P HELX_P7 AA7 SER D 15 ? SER D 18 ? SER X 324 SER X 327 5 ? 4 HELX_P HELX_P8 AA8 ASP D 34 ? SER D 47 ? ASP X 343 SER X 356 1 ? 14 HELX_P HELX_P9 AA9 ASN D 52 ? LYS D 66 ? ASN X 361 LYS X 375 1 ? 15 HELX_P HELX_P10 AB1 ASP D 82 ? GLU D 92 ? ASP X 391 GLU X 401 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? B DA 1 N1 ? ? ? 1_555 C DT 10 N3 ? ? B DA 2 C DT 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B DA 1 N6 ? ? ? 1_555 C DT 10 O4 ? ? B DA 2 C DT 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B DC 2 N3 ? ? ? 1_555 C DG 9 N1 ? ? B DC 3 C DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B DC 2 N4 ? ? ? 1_555 C DG 9 O6 ? ? B DC 3 C DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B DC 2 O2 ? ? ? 1_555 C DG 9 N2 ? ? B DC 3 C DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B DC 3 N3 ? ? ? 1_555 C DG 8 N1 ? ? B DC 4 C DG 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B DC 3 N4 ? ? ? 1_555 C DG 8 O6 ? ? B DC 4 C DG 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B DC 3 O2 ? ? ? 1_555 C DG 8 N2 ? ? B DC 4 C DG 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B DG 4 N1 ? ? ? 1_555 C DC 7 N3 ? ? B DG 5 C DC 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B DG 4 N2 ? ? ? 1_555 C DC 7 O2 ? ? B DG 5 C DC 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B DG 4 O6 ? ? ? 1_555 C DC 7 N4 ? ? B DG 5 C DC 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B DG 5 N1 ? ? ? 1_555 C DC 6 N3 ? ? B DG 6 C DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B DG 5 N2 ? ? ? 1_555 C DC 6 O2 ? ? B DG 6 C DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B DG 5 O6 ? ? ? 1_555 C DC 6 N4 ? ? B DG 6 C DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B DA 6 N1 ? ? ? 1_555 C DT 5 N3 ? ? B DA 7 C DT 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B DA 6 N6 ? ? ? 1_555 C DT 5 O4 ? ? B DA 7 C DT 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B DA 7 N1 ? ? ? 1_555 C DT 4 N3 ? ? B DA 8 C DT 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B DA 7 N6 ? ? ? 1_555 C DT 4 O4 ? ? B DA 8 C DT 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B DG 8 N1 ? ? ? 1_555 C DC 3 N3 ? ? B DG 9 C DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B DG 8 N2 ? ? ? 1_555 C DC 3 O2 ? ? B DG 9 C DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? B DG 8 O6 ? ? ? 1_555 C DC 3 N4 ? ? B DG 9 C DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? B DT 9 N3 ? ? ? 1_555 C DA 2 N1 ? ? B DT 10 C DA 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? B DT 9 O4 ? ? ? 1_555 C DA 2 N6 ? ? B DT 10 C DA 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? E DA 1 N1 ? ? ? 1_555 F DT 10 N3 ? ? Y DA 2 Z DT 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? E DA 1 N6 ? ? ? 1_555 F DT 10 O4 ? ? Y DA 2 Z DT 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? E DC 2 N3 ? ? ? 1_555 F DG 9 N1 ? ? Y DC 3 Z DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? E DC 2 N4 ? ? ? 1_555 F DG 9 O6 ? ? Y DC 3 Z DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? E DC 2 O2 ? ? ? 1_555 F DG 9 N2 ? ? Y DC 3 Z DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? E DC 3 N3 ? ? ? 1_555 F DG 8 N1 ? ? Y DC 4 Z DG 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? E DC 3 N4 ? ? ? 1_555 F DG 8 O6 ? ? Y DC 4 Z DG 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? E DC 3 O2 ? ? ? 1_555 F DG 8 N2 ? ? Y DC 4 Z DG 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? E DG 4 N1 ? ? ? 1_555 F DC 7 N3 ? ? Y DG 5 Z DC 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? E DG 4 N2 ? ? ? 1_555 F DC 7 O2 ? ? Y DG 5 Z DC 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? E DG 4 O6 ? ? ? 1_555 F DC 7 N4 ? ? Y DG 5 Z DC 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? E DG 5 N1 ? ? ? 1_555 F DC 6 N3 ? ? Y DG 6 Z DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? E DG 5 N2 ? ? ? 1_555 F DC 6 O2 ? ? Y DG 6 Z DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? E DG 5 O6 ? ? ? 1_555 F DC 6 N4 ? ? Y DG 6 Z DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? E DA 6 N1 ? ? ? 1_555 F DT 5 N3 ? ? Y DA 7 Z DT 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? E DA 6 N6 ? ? ? 1_555 F DT 5 O4 ? ? Y DA 7 Z DT 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? E DA 7 N1 ? ? ? 1_555 F DT 4 N3 ? ? Y DA 8 Z DT 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? E DA 7 N6 ? ? ? 1_555 F DT 4 O4 ? ? Y DA 8 Z DT 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? E DG 8 N1 ? ? ? 1_555 F DC 3 N3 ? ? Y DG 9 Z DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? E DG 8 N2 ? ? ? 1_555 F DC 3 O2 ? ? Y DG 9 Z DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? E DG 8 O6 ? ? ? 1_555 F DC 3 N4 ? ? Y DG 9 Z DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? E DT 9 N3 ? ? ? 1_555 F DA 2 N1 ? ? Y DT 10 Z DA 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? E DT 9 O4 ? ? ? 1_555 F DA 2 N6 ? ? Y DT 10 Z DA 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 THR 26 A . ? THR 335 A ASN 27 A ? ASN 336 A 1 -0.98 2 GLU 24 D . ? GLU 333 X GLY 25 D ? GLY 334 X 1 -5.39 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 4 ? AA2 ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 THR A 22 ? TRP A 23 ? THR A 331 TRP A 332 AA1 2 GLU A 29 ? LYS A 31 ? GLU A 338 LYS A 340 AA1 3 ALA A 78 ? PHE A 81 ? ALA A 387 PHE A 390 AA1 4 MET A 69 ? LYS A 71 ? MET A 378 LYS A 380 AA2 1 THR D 22 ? TRP D 23 ? THR X 331 TRP X 332 AA2 2 GLU D 29 ? LYS D 31 ? GLU X 338 LYS X 340 AA2 3 ALA D 78 ? PHE D 81 ? ALA X 387 PHE X 390 AA2 4 MET D 69 ? LYS D 71 ? MET X 378 LYS X 380 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N THR A 22 ? N THR A 331 O LYS A 31 ? O LYS A 340 AA1 2 3 N PHE A 30 ? N PHE A 339 O TYR A 79 ? O TYR A 388 AA1 3 4 O LYS A 80 ? O LYS A 389 N THR A 70 ? N THR A 379 AA2 1 2 N THR D 22 ? N THR X 331 O LYS D 31 ? O LYS X 340 AA2 2 3 N PHE D 30 ? N PHE X 339 O TYR D 79 ? O TYR X 388 AA2 3 4 O LYS D 80 ? O LYS X 389 N THR D 70 ? N THR X 379 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C1'" B DC 3 ? ? "O4'" B DC 3 ? ? "C4'" B DC 3 ? ? 103.70 110.10 -6.40 1.00 N 2 1 "O4'" B DA 8 ? ? "C1'" B DA 8 ? ? N9 B DA 8 ? ? 111.66 108.30 3.36 0.30 N 3 1 "O4'" C DT 17 ? ? "C1'" C DT 17 ? ? N1 C DT 17 ? ? 103.65 108.00 -4.35 0.70 N 4 1 "O4'" C DC 20 ? ? "C1'" C DC 20 ? ? N1 C DC 20 ? ? 111.59 108.30 3.29 0.30 N 5 1 "O4'" C DG 22 ? ? "C1'" C DG 22 ? ? N9 C DG 22 ? ? 110.64 108.30 2.34 0.30 N 6 1 "O4'" C DT 23 ? ? "C1'" C DT 23 ? ? N1 C DT 23 ? ? 110.19 108.30 1.89 0.30 N 7 1 "O4'" Y DA 2 ? ? "C1'" Y DA 2 ? ? N9 Y DA 2 ? ? 111.61 108.30 3.31 0.30 N 8 1 "O4'" Y DC 3 ? ? "C4'" Y DC 3 ? ? "C3'" Y DC 3 ? ? 102.07 104.50 -2.43 0.40 N 9 1 "O4'" Y DG 5 ? ? "C1'" Y DG 5 ? ? N9 Y DG 5 ? ? 113.65 108.30 5.35 0.30 N 10 1 "O4'" Y DA 8 ? ? "C1'" Y DA 8 ? ? N9 Y DA 8 ? ? 110.37 108.30 2.07 0.30 N 11 1 "O4'" Z DC 14 ? ? "C4'" Z DC 14 ? ? "C3'" Z DC 14 ? ? 101.87 104.50 -2.63 0.40 N 12 1 N3 Z DC 14 ? ? C4 Z DC 14 ? ? C5 Z DC 14 ? ? 124.32 121.90 2.42 0.40 N 13 1 "O4'" Z DA 15 ? ? "C1'" Z DA 15 ? ? N9 Z DA 15 ? ? 110.27 108.30 1.97 0.30 N 14 1 "O4'" Z DT 17 ? ? "C1'" Z DT 17 ? ? "C2'" Z DT 17 ? ? 101.03 105.90 -4.87 0.80 N 15 1 N3 Z DT 17 ? ? C4 Z DT 17 ? ? O4 Z DT 17 ? ? 123.59 119.90 3.69 0.60 N 16 1 "O4'" Z DC 19 ? ? "C1'" Z DC 19 ? ? N1 Z DC 19 ? ? 111.33 108.30 3.03 0.30 N 17 1 "O4'" Z DC 20 ? ? "C1'" Z DC 20 ? ? N1 Z DC 20 ? ? 113.06 108.30 4.76 0.30 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 324 ? ? -69.60 2.52 2 1 GLU X 333 ? ? -152.35 72.92 3 1 ASN X 336 ? ? -142.37 16.06 # _diffrn_reflns.diffrn_id 1 _diffrn_reflns.pdbx_d_res_high 2.770 _diffrn_reflns.pdbx_d_res_low 50.000 _diffrn_reflns.pdbx_number_obs 9898 _diffrn_reflns.pdbx_Rmerge_I_obs 0.078 _diffrn_reflns.pdbx_Rsym_value ? _diffrn_reflns.pdbx_chi_squared 1.68 _diffrn_reflns.pdbx_redundancy 6.40 _diffrn_reflns.pdbx_rejects ? _diffrn_reflns.pdbx_percent_possible_obs 99.90 _diffrn_reflns.pdbx_observed_criterion ? _diffrn_reflns.number 63032 _diffrn_reflns.limit_h_max ? _diffrn_reflns.limit_h_min ? _diffrn_reflns.limit_k_max ? _diffrn_reflns.limit_k_min ? _diffrn_reflns.limit_l_max ? _diffrn_reflns.limit_l_min ? # loop_ _pdbx_diffrn_reflns_shell.diffrn_id _pdbx_diffrn_reflns_shell.d_res_high _pdbx_diffrn_reflns_shell.d_res_low _pdbx_diffrn_reflns_shell.number_obs _pdbx_diffrn_reflns_shell.rejects _pdbx_diffrn_reflns_shell.Rmerge_I_obs _pdbx_diffrn_reflns_shell.Rsym_value _pdbx_diffrn_reflns_shell.chi_squared _pdbx_diffrn_reflns_shell.redundancy _pdbx_diffrn_reflns_shell.percent_possible_obs 1 7.51 50.00 ? ? 0.058 ? 4.469 5.40 ? 1 5.96 7.51 ? ? 0.061 ? 3.124 6.10 ? 1 5.21 5.96 ? ? 0.066 ? 3.109 6.20 ? 1 4.74 5.21 ? ? 0.063 ? 2.330 6.40 ? 1 4.40 4.74 ? ? 0.059 ? 2.193 6.40 ? 1 4.14 4.40 ? ? 0.060 ? 1.925 6.50 ? 1 3.93 4.14 ? ? 0.064 ? 1.892 6.50 ? 1 3.76 3.93 ? ? 0.076 ? 1.834 6.50 ? 1 3.61 3.76 ? ? 0.076 ? 1.454 6.50 ? 1 3.49 3.61 ? ? 0.079 ? 1.349 6.50 ? 1 3.38 3.49 ? ? 0.077 ? 1.344 6.50 ? 1 3.28 3.38 ? ? 0.086 ? 1.322 6.50 ? 1 3.20 3.28 ? ? 0.088 ? 1.165 6.50 ? 1 3.12 3.20 ? ? 0.116 ? 1.062 6.50 ? 1 3.05 3.12 ? ? 0.172 ? 1.009 6.50 ? 1 2.98 3.05 ? ? 0.264 ? 0.853 6.40 ? 1 2.92 2.98 ? ? 0.304 ? 0.828 6.60 ? 1 2.87 2.92 ? ? 0.355 ? 0.874 6.50 ? 1 2.82 2.87 ? ? 0.415 ? 0.796 6.40 ? 1 2.77 2.82 ? ? 0.456 ? 0.796 6.20 ? # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 10.3564 _pdbx_refine_tls.origin_y 30.8682 _pdbx_refine_tls.origin_z 0.1159 _pdbx_refine_tls.T[1][1] 0.1542 _pdbx_refine_tls.T[2][2] 0.2107 _pdbx_refine_tls.T[3][3] 0.2056 _pdbx_refine_tls.T[1][2] -0.0396 _pdbx_refine_tls.T[1][3] -0.0322 _pdbx_refine_tls.T[2][3] 0.0043 _pdbx_refine_tls.L[1][1] 0.5964 _pdbx_refine_tls.L[2][2] 2.2711 _pdbx_refine_tls.L[3][3] 1.9920 _pdbx_refine_tls.L[1][2] -0.7315 _pdbx_refine_tls.L[1][3] 0.0206 _pdbx_refine_tls.L[2][3] -0.8010 _pdbx_refine_tls.S[1][1] 0.0832 _pdbx_refine_tls.S[2][2] -0.0178 _pdbx_refine_tls.S[3][3] -0.0651 _pdbx_refine_tls.S[1][2] -0.0497 _pdbx_refine_tls.S[1][3] -0.1115 _pdbx_refine_tls.S[2][3] 0.0396 _pdbx_refine_tls.S[2][1] -0.0215 _pdbx_refine_tls.S[3][1] -0.0080 _pdbx_refine_tls.S[3][2] 0.0355 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 311 A 406 all ? ? ? ? ? 'X-RAY DIFFRACTION' 2 1 B 2 B 10 all ? ? ? ? ? 'X-RAY DIFFRACTION' 3 1 C 14 C 23 all ? ? ? ? ? 'X-RAY DIFFRACTION' 4 1 X 310 X 403 all ? ? ? ? ? 'X-RAY DIFFRACTION' 5 1 Y 2 Y 10 all ? ? ? ? ? 'X-RAY DIFFRACTION' 6 1 Z 14 Z 23 all ? ? ? ? ? # _phasing.method MR # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLN 310 ? A GLN 1 2 1 Y 1 X HIS 404 ? D HIS 95 3 1 Y 1 X HIS 405 ? D HIS 96 4 1 Y 1 X HIS 406 ? D HIS 97 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 DA OP3 O N N 88 DA P P N N 89 DA OP1 O N N 90 DA OP2 O N N 91 DA "O5'" O N N 92 DA "C5'" C N N 93 DA "C4'" C N R 94 DA "O4'" O N N 95 DA "C3'" C N S 96 DA "O3'" O N N 97 DA "C2'" C N N 98 DA "C1'" C N R 99 DA N9 N Y N 100 DA C8 C Y N 101 DA N7 N Y N 102 DA C5 C Y N 103 DA C6 C Y N 104 DA N6 N N N 105 DA N1 N Y N 106 DA C2 C Y N 107 DA N3 N Y N 108 DA C4 C Y N 109 DA HOP3 H N N 110 DA HOP2 H N N 111 DA "H5'" H N N 112 DA "H5''" H N N 113 DA "H4'" H N N 114 DA "H3'" H N N 115 DA "HO3'" H N N 116 DA "H2'" H N N 117 DA "H2''" H N N 118 DA "H1'" H N N 119 DA H8 H N N 120 DA H61 H N N 121 DA H62 H N N 122 DA H2 H N N 123 DC OP3 O N N 124 DC P P N N 125 DC OP1 O N N 126 DC OP2 O N N 127 DC "O5'" O N N 128 DC "C5'" C N N 129 DC "C4'" C N R 130 DC "O4'" O N N 131 DC "C3'" C N S 132 DC "O3'" O N N 133 DC "C2'" C N N 134 DC "C1'" C N R 135 DC N1 N N N 136 DC C2 C N N 137 DC O2 O N N 138 DC N3 N N N 139 DC C4 C N N 140 DC N4 N N N 141 DC C5 C N N 142 DC C6 C N N 143 DC HOP3 H N N 144 DC HOP2 H N N 145 DC "H5'" H N N 146 DC "H5''" H N N 147 DC "H4'" H N N 148 DC "H3'" H N N 149 DC "HO3'" H N N 150 DC "H2'" H N N 151 DC "H2''" H N N 152 DC "H1'" H N N 153 DC H41 H N N 154 DC H42 H N N 155 DC H5 H N N 156 DC H6 H N N 157 DG OP3 O N N 158 DG P P N N 159 DG OP1 O N N 160 DG OP2 O N N 161 DG "O5'" O N N 162 DG "C5'" C N N 163 DG "C4'" C N R 164 DG "O4'" O N N 165 DG "C3'" C N S 166 DG "O3'" O N N 167 DG "C2'" C N N 168 DG "C1'" C N R 169 DG N9 N Y N 170 DG C8 C Y N 171 DG N7 N Y N 172 DG C5 C Y N 173 DG C6 C N N 174 DG O6 O N N 175 DG N1 N N N 176 DG C2 C N N 177 DG N2 N N N 178 DG N3 N N N 179 DG C4 C Y N 180 DG HOP3 H N N 181 DG HOP2 H N N 182 DG "H5'" H N N 183 DG "H5''" H N N 184 DG "H4'" H N N 185 DG "H3'" H N N 186 DG "HO3'" H N N 187 DG "H2'" H N N 188 DG "H2''" H N N 189 DG "H1'" H N N 190 DG H8 H N N 191 DG H1 H N N 192 DG H21 H N N 193 DG H22 H N N 194 DT OP3 O N N 195 DT P P N N 196 DT OP1 O N N 197 DT OP2 O N N 198 DT "O5'" O N N 199 DT "C5'" C N N 200 DT "C4'" C N R 201 DT "O4'" O N N 202 DT "C3'" C N S 203 DT "O3'" O N N 204 DT "C2'" C N N 205 DT "C1'" C N R 206 DT N1 N N N 207 DT C2 C N N 208 DT O2 O N N 209 DT N3 N N N 210 DT C4 C N N 211 DT O4 O N N 212 DT C5 C N N 213 DT C7 C N N 214 DT C6 C N N 215 DT HOP3 H N N 216 DT HOP2 H N N 217 DT "H5'" H N N 218 DT "H5''" H N N 219 DT "H4'" H N N 220 DT "H3'" H N N 221 DT "HO3'" H N N 222 DT "H2'" H N N 223 DT "H2''" H N N 224 DT "H1'" H N N 225 DT H3 H N N 226 DT H71 H N N 227 DT H72 H N N 228 DT H73 H N N 229 DT H6 H N N 230 GLN N N N N 231 GLN CA C N S 232 GLN C C N N 233 GLN O O N N 234 GLN CB C N N 235 GLN CG C N N 236 GLN CD C N N 237 GLN OE1 O N N 238 GLN NE2 N N N 239 GLN OXT O N N 240 GLN H H N N 241 GLN H2 H N N 242 GLN HA H N N 243 GLN HB2 H N N 244 GLN HB3 H N N 245 GLN HG2 H N N 246 GLN HG3 H N N 247 GLN HE21 H N N 248 GLN HE22 H N N 249 GLN HXT H N N 250 GLU N N N N 251 GLU CA C N S 252 GLU C C N N 253 GLU O O N N 254 GLU CB C N N 255 GLU CG C N N 256 GLU CD C N N 257 GLU OE1 O N N 258 GLU OE2 O N N 259 GLU OXT O N N 260 GLU H H N N 261 GLU H2 H N N 262 GLU HA H N N 263 GLU HB2 H N N 264 GLU HB3 H N N 265 GLU HG2 H N N 266 GLU HG3 H N N 267 GLU HE2 H N N 268 GLU HXT H N N 269 GLY N N N N 270 GLY CA C N N 271 GLY C C N N 272 GLY O O N N 273 GLY OXT O N N 274 GLY H H N N 275 GLY H2 H N N 276 GLY HA2 H N N 277 GLY HA3 H N N 278 GLY HXT H N N 279 HIS N N N N 280 HIS CA C N S 281 HIS C C N N 282 HIS O O N N 283 HIS CB C N N 284 HIS CG C Y N 285 HIS ND1 N Y N 286 HIS CD2 C Y N 287 HIS CE1 C Y N 288 HIS NE2 N Y N 289 HIS OXT O N N 290 HIS H H N N 291 HIS H2 H N N 292 HIS HA H N N 293 HIS HB2 H N N 294 HIS HB3 H N N 295 HIS HD1 H N N 296 HIS HD2 H N N 297 HIS HE1 H N N 298 HIS HE2 H N N 299 HIS HXT H N N 300 ILE N N N N 301 ILE CA C N S 302 ILE C C N N 303 ILE O O N N 304 ILE CB C N S 305 ILE CG1 C N N 306 ILE CG2 C N N 307 ILE CD1 C N N 308 ILE OXT O N N 309 ILE H H N N 310 ILE H2 H N N 311 ILE HA H N N 312 ILE HB H N N 313 ILE HG12 H N N 314 ILE HG13 H N N 315 ILE HG21 H N N 316 ILE HG22 H N N 317 ILE HG23 H N N 318 ILE HD11 H N N 319 ILE HD12 H N N 320 ILE HD13 H N N 321 ILE HXT H N N 322 LEU N N N N 323 LEU CA C N S 324 LEU C C N N 325 LEU O O N N 326 LEU CB C N N 327 LEU CG C N N 328 LEU CD1 C N N 329 LEU CD2 C N N 330 LEU OXT O N N 331 LEU H H N N 332 LEU H2 H N N 333 LEU HA H N N 334 LEU HB2 H N N 335 LEU HB3 H N N 336 LEU HG H N N 337 LEU HD11 H N N 338 LEU HD12 H N N 339 LEU HD13 H N N 340 LEU HD21 H N N 341 LEU HD22 H N N 342 LEU HD23 H N N 343 LEU HXT H N N 344 LYS N N N N 345 LYS CA C N S 346 LYS C C N N 347 LYS O O N N 348 LYS CB C N N 349 LYS CG C N N 350 LYS CD C N N 351 LYS CE C N N 352 LYS NZ N N N 353 LYS OXT O N N 354 LYS H H N N 355 LYS H2 H N N 356 LYS HA H N N 357 LYS HB2 H N N 358 LYS HB3 H N N 359 LYS HG2 H N N 360 LYS HG3 H N N 361 LYS HD2 H N N 362 LYS HD3 H N N 363 LYS HE2 H N N 364 LYS HE3 H N N 365 LYS HZ1 H N N 366 LYS HZ2 H N N 367 LYS HZ3 H N N 368 LYS HXT H N N 369 MET N N N N 370 MET CA C N S 371 MET C C N N 372 MET O O N N 373 MET CB C N N 374 MET CG C N N 375 MET SD S N N 376 MET CE C N N 377 MET OXT O N N 378 MET H H N N 379 MET H2 H N N 380 MET HA H N N 381 MET HB2 H N N 382 MET HB3 H N N 383 MET HG2 H N N 384 MET HG3 H N N 385 MET HE1 H N N 386 MET HE2 H N N 387 MET HE3 H N N 388 MET HXT H N N 389 PHE N N N N 390 PHE CA C N S 391 PHE C C N N 392 PHE O O N N 393 PHE CB C N N 394 PHE CG C Y N 395 PHE CD1 C Y N 396 PHE CD2 C Y N 397 PHE CE1 C Y N 398 PHE CE2 C Y N 399 PHE CZ C Y N 400 PHE OXT O N N 401 PHE H H N N 402 PHE H2 H N N 403 PHE HA H N N 404 PHE HB2 H N N 405 PHE HB3 H N N 406 PHE HD1 H N N 407 PHE HD2 H N N 408 PHE HE1 H N N 409 PHE HE2 H N N 410 PHE HZ H N N 411 PHE HXT H N N 412 PRO N N N N 413 PRO CA C N S 414 PRO C C N N 415 PRO O O N N 416 PRO CB C N N 417 PRO CG C N N 418 PRO CD C N N 419 PRO OXT O N N 420 PRO H H N N 421 PRO HA H N N 422 PRO HB2 H N N 423 PRO HB3 H N N 424 PRO HG2 H N N 425 PRO HG3 H N N 426 PRO HD2 H N N 427 PRO HD3 H N N 428 PRO HXT H N N 429 SER N N N N 430 SER CA C N S 431 SER C C N N 432 SER O O N N 433 SER CB C N N 434 SER OG O N N 435 SER OXT O N N 436 SER H H N N 437 SER H2 H N N 438 SER HA H N N 439 SER HB2 H N N 440 SER HB3 H N N 441 SER HG H N N 442 SER HXT H N N 443 THR N N N N 444 THR CA C N S 445 THR C C N N 446 THR O O N N 447 THR CB C N R 448 THR OG1 O N N 449 THR CG2 C N N 450 THR OXT O N N 451 THR H H N N 452 THR H2 H N N 453 THR HA H N N 454 THR HB H N N 455 THR HG1 H N N 456 THR HG21 H N N 457 THR HG22 H N N 458 THR HG23 H N N 459 THR HXT H N N 460 TRP N N N N 461 TRP CA C N S 462 TRP C C N N 463 TRP O O N N 464 TRP CB C N N 465 TRP CG C Y N 466 TRP CD1 C Y N 467 TRP CD2 C Y N 468 TRP NE1 N Y N 469 TRP CE2 C Y N 470 TRP CE3 C Y N 471 TRP CZ2 C Y N 472 TRP CZ3 C Y N 473 TRP CH2 C Y N 474 TRP OXT O N N 475 TRP H H N N 476 TRP H2 H N N 477 TRP HA H N N 478 TRP HB2 H N N 479 TRP HB3 H N N 480 TRP HD1 H N N 481 TRP HE1 H N N 482 TRP HE3 H N N 483 TRP HZ2 H N N 484 TRP HZ3 H N N 485 TRP HH2 H N N 486 TRP HXT H N N 487 TYR N N N N 488 TYR CA C N S 489 TYR C C N N 490 TYR O O N N 491 TYR CB C N N 492 TYR CG C Y N 493 TYR CD1 C Y N 494 TYR CD2 C Y N 495 TYR CE1 C Y N 496 TYR CE2 C Y N 497 TYR CZ C Y N 498 TYR OH O N N 499 TYR OXT O N N 500 TYR H H N N 501 TYR H2 H N N 502 TYR HA H N N 503 TYR HB2 H N N 504 TYR HB3 H N N 505 TYR HD1 H N N 506 TYR HD2 H N N 507 TYR HE1 H N N 508 TYR HE2 H N N 509 TYR HH H N N 510 TYR HXT H N N 511 VAL N N N N 512 VAL CA C N S 513 VAL C C N N 514 VAL O O N N 515 VAL CB C N N 516 VAL CG1 C N N 517 VAL CG2 C N N 518 VAL OXT O N N 519 VAL H H N N 520 VAL H2 H N N 521 VAL HA H N N 522 VAL HB H N N 523 VAL HG11 H N N 524 VAL HG12 H N N 525 VAL HG13 H N N 526 VAL HG21 H N N 527 VAL HG22 H N N 528 VAL HG23 H N N 529 VAL HXT H N N 530 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 DA OP3 P sing N N 83 DA OP3 HOP3 sing N N 84 DA P OP1 doub N N 85 DA P OP2 sing N N 86 DA P "O5'" sing N N 87 DA OP2 HOP2 sing N N 88 DA "O5'" "C5'" sing N N 89 DA "C5'" "C4'" sing N N 90 DA "C5'" "H5'" sing N N 91 DA "C5'" "H5''" sing N N 92 DA "C4'" "O4'" sing N N 93 DA "C4'" "C3'" sing N N 94 DA "C4'" "H4'" sing N N 95 DA "O4'" "C1'" sing N N 96 DA "C3'" "O3'" sing N N 97 DA "C3'" "C2'" sing N N 98 DA "C3'" "H3'" sing N N 99 DA "O3'" "HO3'" sing N N 100 DA "C2'" "C1'" sing N N 101 DA "C2'" "H2'" sing N N 102 DA "C2'" "H2''" sing N N 103 DA "C1'" N9 sing N N 104 DA "C1'" "H1'" sing N N 105 DA N9 C8 sing Y N 106 DA N9 C4 sing Y N 107 DA C8 N7 doub Y N 108 DA C8 H8 sing N N 109 DA N7 C5 sing Y N 110 DA C5 C6 sing Y N 111 DA C5 C4 doub Y N 112 DA C6 N6 sing N N 113 DA C6 N1 doub Y N 114 DA N6 H61 sing N N 115 DA N6 H62 sing N N 116 DA N1 C2 sing Y N 117 DA C2 N3 doub Y N 118 DA C2 H2 sing N N 119 DA N3 C4 sing Y N 120 DC OP3 P sing N N 121 DC OP3 HOP3 sing N N 122 DC P OP1 doub N N 123 DC P OP2 sing N N 124 DC P "O5'" sing N N 125 DC OP2 HOP2 sing N N 126 DC "O5'" "C5'" sing N N 127 DC "C5'" "C4'" sing N N 128 DC "C5'" "H5'" sing N N 129 DC "C5'" "H5''" sing N N 130 DC "C4'" "O4'" sing N N 131 DC "C4'" "C3'" sing N N 132 DC "C4'" "H4'" sing N N 133 DC "O4'" "C1'" sing N N 134 DC "C3'" "O3'" sing N N 135 DC "C3'" "C2'" sing N N 136 DC "C3'" "H3'" sing N N 137 DC "O3'" "HO3'" sing N N 138 DC "C2'" "C1'" sing N N 139 DC "C2'" "H2'" sing N N 140 DC "C2'" "H2''" sing N N 141 DC "C1'" N1 sing N N 142 DC "C1'" "H1'" sing N N 143 DC N1 C2 sing N N 144 DC N1 C6 sing N N 145 DC C2 O2 doub N N 146 DC C2 N3 sing N N 147 DC N3 C4 doub N N 148 DC C4 N4 sing N N 149 DC C4 C5 sing N N 150 DC N4 H41 sing N N 151 DC N4 H42 sing N N 152 DC C5 C6 doub N N 153 DC C5 H5 sing N N 154 DC C6 H6 sing N N 155 DG OP3 P sing N N 156 DG OP3 HOP3 sing N N 157 DG P OP1 doub N N 158 DG P OP2 sing N N 159 DG P "O5'" sing N N 160 DG OP2 HOP2 sing N N 161 DG "O5'" "C5'" sing N N 162 DG "C5'" "C4'" sing N N 163 DG "C5'" "H5'" sing N N 164 DG "C5'" "H5''" sing N N 165 DG "C4'" "O4'" sing N N 166 DG "C4'" "C3'" sing N N 167 DG "C4'" "H4'" sing N N 168 DG "O4'" "C1'" sing N N 169 DG "C3'" "O3'" sing N N 170 DG "C3'" "C2'" sing N N 171 DG "C3'" "H3'" sing N N 172 DG "O3'" "HO3'" sing N N 173 DG "C2'" "C1'" sing N N 174 DG "C2'" "H2'" sing N N 175 DG "C2'" "H2''" sing N N 176 DG "C1'" N9 sing N N 177 DG "C1'" "H1'" sing N N 178 DG N9 C8 sing Y N 179 DG N9 C4 sing Y N 180 DG C8 N7 doub Y N 181 DG C8 H8 sing N N 182 DG N7 C5 sing Y N 183 DG C5 C6 sing N N 184 DG C5 C4 doub Y N 185 DG C6 O6 doub N N 186 DG C6 N1 sing N N 187 DG N1 C2 sing N N 188 DG N1 H1 sing N N 189 DG C2 N2 sing N N 190 DG C2 N3 doub N N 191 DG N2 H21 sing N N 192 DG N2 H22 sing N N 193 DG N3 C4 sing N N 194 DT OP3 P sing N N 195 DT OP3 HOP3 sing N N 196 DT P OP1 doub N N 197 DT P OP2 sing N N 198 DT P "O5'" sing N N 199 DT OP2 HOP2 sing N N 200 DT "O5'" "C5'" sing N N 201 DT "C5'" "C4'" sing N N 202 DT "C5'" "H5'" sing N N 203 DT "C5'" "H5''" sing N N 204 DT "C4'" "O4'" sing N N 205 DT "C4'" "C3'" sing N N 206 DT "C4'" "H4'" sing N N 207 DT "O4'" "C1'" sing N N 208 DT "C3'" "O3'" sing N N 209 DT "C3'" "C2'" sing N N 210 DT "C3'" "H3'" sing N N 211 DT "O3'" "HO3'" sing N N 212 DT "C2'" "C1'" sing N N 213 DT "C2'" "H2'" sing N N 214 DT "C2'" "H2''" sing N N 215 DT "C1'" N1 sing N N 216 DT "C1'" "H1'" sing N N 217 DT N1 C2 sing N N 218 DT N1 C6 sing N N 219 DT C2 O2 doub N N 220 DT C2 N3 sing N N 221 DT N3 C4 sing N N 222 DT N3 H3 sing N N 223 DT C4 O4 doub N N 224 DT C4 C5 sing N N 225 DT C5 C7 sing N N 226 DT C5 C6 doub N N 227 DT C7 H71 sing N N 228 DT C7 H72 sing N N 229 DT C7 H73 sing N N 230 DT C6 H6 sing N N 231 GLN N CA sing N N 232 GLN N H sing N N 233 GLN N H2 sing N N 234 GLN CA C sing N N 235 GLN CA CB sing N N 236 GLN CA HA sing N N 237 GLN C O doub N N 238 GLN C OXT sing N N 239 GLN CB CG sing N N 240 GLN CB HB2 sing N N 241 GLN CB HB3 sing N N 242 GLN CG CD sing N N 243 GLN CG HG2 sing N N 244 GLN CG HG3 sing N N 245 GLN CD OE1 doub N N 246 GLN CD NE2 sing N N 247 GLN NE2 HE21 sing N N 248 GLN NE2 HE22 sing N N 249 GLN OXT HXT sing N N 250 GLU N CA sing N N 251 GLU N H sing N N 252 GLU N H2 sing N N 253 GLU CA C sing N N 254 GLU CA CB sing N N 255 GLU CA HA sing N N 256 GLU C O doub N N 257 GLU C OXT sing N N 258 GLU CB CG sing N N 259 GLU CB HB2 sing N N 260 GLU CB HB3 sing N N 261 GLU CG CD sing N N 262 GLU CG HG2 sing N N 263 GLU CG HG3 sing N N 264 GLU CD OE1 doub N N 265 GLU CD OE2 sing N N 266 GLU OE2 HE2 sing N N 267 GLU OXT HXT sing N N 268 GLY N CA sing N N 269 GLY N H sing N N 270 GLY N H2 sing N N 271 GLY CA C sing N N 272 GLY CA HA2 sing N N 273 GLY CA HA3 sing N N 274 GLY C O doub N N 275 GLY C OXT sing N N 276 GLY OXT HXT sing N N 277 HIS N CA sing N N 278 HIS N H sing N N 279 HIS N H2 sing N N 280 HIS CA C sing N N 281 HIS CA CB sing N N 282 HIS CA HA sing N N 283 HIS C O doub N N 284 HIS C OXT sing N N 285 HIS CB CG sing N N 286 HIS CB HB2 sing N N 287 HIS CB HB3 sing N N 288 HIS CG ND1 sing Y N 289 HIS CG CD2 doub Y N 290 HIS ND1 CE1 doub Y N 291 HIS ND1 HD1 sing N N 292 HIS CD2 NE2 sing Y N 293 HIS CD2 HD2 sing N N 294 HIS CE1 NE2 sing Y N 295 HIS CE1 HE1 sing N N 296 HIS NE2 HE2 sing N N 297 HIS OXT HXT sing N N 298 ILE N CA sing N N 299 ILE N H sing N N 300 ILE N H2 sing N N 301 ILE CA C sing N N 302 ILE CA CB sing N N 303 ILE CA HA sing N N 304 ILE C O doub N N 305 ILE C OXT sing N N 306 ILE CB CG1 sing N N 307 ILE CB CG2 sing N N 308 ILE CB HB sing N N 309 ILE CG1 CD1 sing N N 310 ILE CG1 HG12 sing N N 311 ILE CG1 HG13 sing N N 312 ILE CG2 HG21 sing N N 313 ILE CG2 HG22 sing N N 314 ILE CG2 HG23 sing N N 315 ILE CD1 HD11 sing N N 316 ILE CD1 HD12 sing N N 317 ILE CD1 HD13 sing N N 318 ILE OXT HXT sing N N 319 LEU N CA sing N N 320 LEU N H sing N N 321 LEU N H2 sing N N 322 LEU CA C sing N N 323 LEU CA CB sing N N 324 LEU CA HA sing N N 325 LEU C O doub N N 326 LEU C OXT sing N N 327 LEU CB CG sing N N 328 LEU CB HB2 sing N N 329 LEU CB HB3 sing N N 330 LEU CG CD1 sing N N 331 LEU CG CD2 sing N N 332 LEU CG HG sing N N 333 LEU CD1 HD11 sing N N 334 LEU CD1 HD12 sing N N 335 LEU CD1 HD13 sing N N 336 LEU CD2 HD21 sing N N 337 LEU CD2 HD22 sing N N 338 LEU CD2 HD23 sing N N 339 LEU OXT HXT sing N N 340 LYS N CA sing N N 341 LYS N H sing N N 342 LYS N H2 sing N N 343 LYS CA C sing N N 344 LYS CA CB sing N N 345 LYS CA HA sing N N 346 LYS C O doub N N 347 LYS C OXT sing N N 348 LYS CB CG sing N N 349 LYS CB HB2 sing N N 350 LYS CB HB3 sing N N 351 LYS CG CD sing N N 352 LYS CG HG2 sing N N 353 LYS CG HG3 sing N N 354 LYS CD CE sing N N 355 LYS CD HD2 sing N N 356 LYS CD HD3 sing N N 357 LYS CE NZ sing N N 358 LYS CE HE2 sing N N 359 LYS CE HE3 sing N N 360 LYS NZ HZ1 sing N N 361 LYS NZ HZ2 sing N N 362 LYS NZ HZ3 sing N N 363 LYS OXT HXT sing N N 364 MET N CA sing N N 365 MET N H sing N N 366 MET N H2 sing N N 367 MET CA C sing N N 368 MET CA CB sing N N 369 MET CA HA sing N N 370 MET C O doub N N 371 MET C OXT sing N N 372 MET CB CG sing N N 373 MET CB HB2 sing N N 374 MET CB HB3 sing N N 375 MET CG SD sing N N 376 MET CG HG2 sing N N 377 MET CG HG3 sing N N 378 MET SD CE sing N N 379 MET CE HE1 sing N N 380 MET CE HE2 sing N N 381 MET CE HE3 sing N N 382 MET OXT HXT sing N N 383 PHE N CA sing N N 384 PHE N H sing N N 385 PHE N H2 sing N N 386 PHE CA C sing N N 387 PHE CA CB sing N N 388 PHE CA HA sing N N 389 PHE C O doub N N 390 PHE C OXT sing N N 391 PHE CB CG sing N N 392 PHE CB HB2 sing N N 393 PHE CB HB3 sing N N 394 PHE CG CD1 doub Y N 395 PHE CG CD2 sing Y N 396 PHE CD1 CE1 sing Y N 397 PHE CD1 HD1 sing N N 398 PHE CD2 CE2 doub Y N 399 PHE CD2 HD2 sing N N 400 PHE CE1 CZ doub Y N 401 PHE CE1 HE1 sing N N 402 PHE CE2 CZ sing Y N 403 PHE CE2 HE2 sing N N 404 PHE CZ HZ sing N N 405 PHE OXT HXT sing N N 406 PRO N CA sing N N 407 PRO N CD sing N N 408 PRO N H sing N N 409 PRO CA C sing N N 410 PRO CA CB sing N N 411 PRO CA HA sing N N 412 PRO C O doub N N 413 PRO C OXT sing N N 414 PRO CB CG sing N N 415 PRO CB HB2 sing N N 416 PRO CB HB3 sing N N 417 PRO CG CD sing N N 418 PRO CG HG2 sing N N 419 PRO CG HG3 sing N N 420 PRO CD HD2 sing N N 421 PRO CD HD3 sing N N 422 PRO OXT HXT sing N N 423 SER N CA sing N N 424 SER N H sing N N 425 SER N H2 sing N N 426 SER CA C sing N N 427 SER CA CB sing N N 428 SER CA HA sing N N 429 SER C O doub N N 430 SER C OXT sing N N 431 SER CB OG sing N N 432 SER CB HB2 sing N N 433 SER CB HB3 sing N N 434 SER OG HG sing N N 435 SER OXT HXT sing N N 436 THR N CA sing N N 437 THR N H sing N N 438 THR N H2 sing N N 439 THR CA C sing N N 440 THR CA CB sing N N 441 THR CA HA sing N N 442 THR C O doub N N 443 THR C OXT sing N N 444 THR CB OG1 sing N N 445 THR CB CG2 sing N N 446 THR CB HB sing N N 447 THR OG1 HG1 sing N N 448 THR CG2 HG21 sing N N 449 THR CG2 HG22 sing N N 450 THR CG2 HG23 sing N N 451 THR OXT HXT sing N N 452 TRP N CA sing N N 453 TRP N H sing N N 454 TRP N H2 sing N N 455 TRP CA C sing N N 456 TRP CA CB sing N N 457 TRP CA HA sing N N 458 TRP C O doub N N 459 TRP C OXT sing N N 460 TRP CB CG sing N N 461 TRP CB HB2 sing N N 462 TRP CB HB3 sing N N 463 TRP CG CD1 doub Y N 464 TRP CG CD2 sing Y N 465 TRP CD1 NE1 sing Y N 466 TRP CD1 HD1 sing N N 467 TRP CD2 CE2 doub Y N 468 TRP CD2 CE3 sing Y N 469 TRP NE1 CE2 sing Y N 470 TRP NE1 HE1 sing N N 471 TRP CE2 CZ2 sing Y N 472 TRP CE3 CZ3 doub Y N 473 TRP CE3 HE3 sing N N 474 TRP CZ2 CH2 doub Y N 475 TRP CZ2 HZ2 sing N N 476 TRP CZ3 CH2 sing Y N 477 TRP CZ3 HZ3 sing N N 478 TRP CH2 HH2 sing N N 479 TRP OXT HXT sing N N 480 TYR N CA sing N N 481 TYR N H sing N N 482 TYR N H2 sing N N 483 TYR CA C sing N N 484 TYR CA CB sing N N 485 TYR CA HA sing N N 486 TYR C O doub N N 487 TYR C OXT sing N N 488 TYR CB CG sing N N 489 TYR CB HB2 sing N N 490 TYR CB HB3 sing N N 491 TYR CG CD1 doub Y N 492 TYR CG CD2 sing Y N 493 TYR CD1 CE1 sing Y N 494 TYR CD1 HD1 sing N N 495 TYR CD2 CE2 doub Y N 496 TYR CD2 HD2 sing N N 497 TYR CE1 CZ doub Y N 498 TYR CE1 HE1 sing N N 499 TYR CE2 CZ sing Y N 500 TYR CE2 HE2 sing N N 501 TYR CZ OH sing N N 502 TYR OH HH sing N N 503 TYR OXT HXT sing N N 504 VAL N CA sing N N 505 VAL N H sing N N 506 VAL N H2 sing N N 507 VAL CA C sing N N 508 VAL CA CB sing N N 509 VAL CA HA sing N N 510 VAL C O doub N N 511 VAL C OXT sing N N 512 VAL CB CG1 sing N N 513 VAL CB CG2 sing N N 514 VAL CB HB sing N N 515 VAL CG1 HG11 sing N N 516 VAL CG1 HG12 sing N N 517 VAL CG1 HG13 sing N N 518 VAL CG2 HG21 sing N N 519 VAL CG2 HG22 sing N N 520 VAL CG2 HG23 sing N N 521 VAL OXT HXT sing N N 522 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 5YBD 'double helix' 5YBD 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DA 1 1_555 C DT 10 1_555 -0.320 -0.143 -0.046 -2.965 -12.438 0.440 1 B_DA2:DT23_C B 2 ? C 23 ? 20 1 1 B DC 2 1_555 C DG 9 1_555 -0.155 -0.156 0.240 -4.566 -10.822 0.119 2 B_DC3:DG22_C B 3 ? C 22 ? 19 1 1 B DC 3 1_555 C DG 8 1_555 0.066 -0.016 0.221 -17.446 -8.277 1.885 3 B_DC4:DG21_C B 4 ? C 21 ? 19 1 1 B DG 4 1_555 C DC 7 1_555 -0.069 -0.239 -0.252 -2.091 -0.380 1.847 4 B_DG5:DC20_C B 5 ? C 20 ? 19 1 1 B DG 5 1_555 C DC 6 1_555 -1.185 -0.034 -0.016 5.070 -11.982 8.201 5 B_DG6:DC19_C B 6 ? C 19 ? 19 1 1 B DA 6 1_555 C DT 5 1_555 0.252 -0.175 -0.081 8.662 -20.340 4.758 6 B_DA7:DT18_C B 7 ? C 18 ? 20 1 1 B DA 7 1_555 C DT 4 1_555 0.653 -0.343 -0.043 7.616 -20.722 1.704 7 B_DA8:DT17_C B 8 ? C 17 ? 20 1 1 B DG 8 1_555 C DC 3 1_555 -0.063 -0.321 0.269 -1.248 -9.731 -0.223 8 B_DG9:DC16_C B 9 ? C 16 ? 19 1 1 B DT 9 1_555 C DA 2 1_555 -0.167 -0.107 -0.314 0.094 -6.493 10.954 9 B_DT10:DA15_C B 10 ? C 15 ? 20 1 1 E DA 1 1_555 F DT 10 1_555 -0.015 -0.232 -0.090 1.599 -13.161 -4.374 10 Y_DA2:DT23_Z Y 2 ? Z 23 ? 20 1 1 E DC 2 1_555 F DG 9 1_555 0.177 -0.410 0.009 -1.489 -13.887 1.366 11 Y_DC3:DG22_Z Y 3 ? Z 22 ? 19 1 1 E DC 3 1_555 F DG 8 1_555 -0.040 -0.089 0.511 -21.215 -0.263 -0.760 12 Y_DC4:DG21_Z Y 4 ? Z 21 ? 19 1 1 E DG 4 1_555 F DC 7 1_555 -0.619 -0.110 -0.013 4.566 3.554 2.752 13 Y_DG5:DC20_Z Y 5 ? Z 20 ? 19 1 1 E DG 5 1_555 F DC 6 1_555 -0.220 -0.293 -0.196 5.455 -8.500 -0.751 14 Y_DG6:DC19_Z Y 6 ? Z 19 ? 19 1 1 E DA 6 1_555 F DT 5 1_555 0.328 -0.292 -0.002 8.042 -19.217 4.026 15 Y_DA7:DT18_Z Y 7 ? Z 18 ? 20 1 1 E DA 7 1_555 F DT 4 1_555 0.406 -0.330 0.084 3.670 -14.218 1.019 16 Y_DA8:DT17_Z Y 8 ? Z 17 ? 20 1 1 E DG 8 1_555 F DC 3 1_555 -0.153 -0.239 0.307 -9.148 -19.896 4.599 17 Y_DG9:DC16_Z Y 9 ? Z 16 ? 19 1 1 E DT 9 1_555 F DA 2 1_555 0.181 -0.036 0.136 -18.853 -16.189 10.412 18 Y_DT10:DA15_Z Y 10 ? Z 15 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DA 1 1_555 C DT 10 1_555 B DC 2 1_555 C DG 9 1_555 0.334 -0.894 3.235 -3.567 2.262 31.787 -2.015 -1.230 3.110 4.106 6.477 32.059 1 BB_DA2DC3:DG22DT23_CC B 2 ? C 23 ? B 3 ? C 22 ? 1 B DC 2 1_555 C DG 9 1_555 B DC 3 1_555 C DG 8 1_555 -0.420 -0.885 3.512 -0.504 6.445 34.063 -2.526 0.623 3.300 10.880 0.851 34.654 2 BB_DC3DC4:DG21DG22_CC B 3 ? C 22 ? B 4 ? C 21 ? 1 B DC 3 1_555 C DG 8 1_555 B DG 4 1_555 C DC 7 1_555 0.615 0.675 3.041 4.262 5.761 32.707 0.260 -0.394 3.163 10.080 -7.457 33.462 3 BB_DC4DG5:DC20DG21_CC B 4 ? C 21 ? B 5 ? C 20 ? 1 B DG 4 1_555 C DC 7 1_555 B DG 5 1_555 C DC 6 1_555 -1.063 -0.081 3.184 -4.781 2.899 25.033 -1.003 1.041 3.296 6.583 10.859 25.640 4 BB_DG5DG6:DC19DC20_CC B 5 ? C 20 ? B 6 ? C 19 ? 1 B DG 5 1_555 C DC 6 1_555 B DA 6 1_555 C DT 5 1_555 -0.294 0.150 3.233 -1.617 9.690 34.466 -1.148 0.247 3.169 15.956 2.663 35.798 5 BB_DG6DA7:DT18DC19_CC B 6 ? C 19 ? B 7 ? C 18 ? 1 B DA 6 1_555 C DT 5 1_555 B DA 7 1_555 C DT 4 1_555 -0.001 -0.040 3.250 1.894 3.554 34.800 -0.597 0.284 3.226 5.917 -3.153 35.025 6 BB_DA7DA8:DT17DT18_CC B 7 ? C 18 ? B 8 ? C 17 ? 1 B DA 7 1_555 C DT 4 1_555 B DG 8 1_555 C DC 3 1_555 0.274 -0.821 3.293 -5.749 1.482 38.087 -1.426 -1.125 3.187 2.254 8.745 38.530 7 BB_DA8DG9:DC16DT17_CC B 8 ? C 17 ? B 9 ? C 16 ? 1 B DG 8 1_555 C DC 3 1_555 B DT 9 1_555 C DA 2 1_555 -0.111 -0.740 3.285 7.517 2.210 24.491 -2.281 2.345 3.039 5.046 -17.167 25.696 8 BB_DG9DT10:DA15DC16_CC B 9 ? C 16 ? B 10 ? C 15 ? 1 E DA 1 1_555 F DT 10 1_555 E DC 2 1_555 F DG 9 1_555 0.775 -0.908 3.214 -1.010 3.866 32.908 -2.219 -1.522 3.066 6.793 1.775 33.143 9 YY_DA2DC3:DG22DT23_ZZ Y 2 ? Z 23 ? Y 3 ? Z 22 ? 1 E DC 2 1_555 F DG 9 1_555 E DC 3 1_555 F DG 8 1_555 -0.328 -0.927 3.730 -3.896 5.530 33.980 -2.515 -0.122 3.554 9.348 6.585 34.627 10 YY_DC3DC4:DG21DG22_ZZ Y 3 ? Z 22 ? Y 4 ? Z 21 ? 1 E DC 3 1_555 F DG 8 1_555 E DG 4 1_555 F DC 7 1_555 0.978 0.369 2.739 4.584 3.533 29.282 0.080 -1.073 2.879 6.904 -8.957 29.836 11 YY_DC4DG5:DC20DG21_ZZ Y 4 ? Z 21 ? Y 5 ? Z 20 ? 1 E DG 4 1_555 F DC 7 1_555 E DG 5 1_555 F DC 6 1_555 -1.689 -0.150 3.286 -3.774 6.893 34.669 -1.281 2.202 3.356 11.387 6.234 35.522 12 YY_DG5DG6:DC19DC20_ZZ Y 5 ? Z 20 ? Y 6 ? Z 19 ? 1 E DG 5 1_555 F DC 6 1_555 E DA 6 1_555 F DT 5 1_555 -0.088 -0.274 3.253 -1.677 4.611 30.978 -1.367 -0.150 3.180 8.566 3.115 31.355 13 YY_DG6DA7:DT18DC19_ZZ Y 6 ? Z 19 ? Y 7 ? Z 18 ? 1 E DA 6 1_555 F DT 5 1_555 E DA 7 1_555 F DT 4 1_555 -0.055 -0.372 3.298 -1.482 3.622 33.313 -1.241 -0.149 3.240 6.291 2.575 33.535 14 YY_DA7DA8:DT17DT18_ZZ Y 7 ? Z 18 ? Y 8 ? Z 17 ? 1 E DA 7 1_555 F DT 4 1_555 E DG 8 1_555 F DC 3 1_555 0.449 -0.760 3.450 -2.657 5.182 36.587 -1.917 -1.077 3.277 8.190 4.200 37.032 15 YY_DA8DG9:DC16DT17_ZZ Y 8 ? Z 17 ? Y 9 ? Z 16 ? 1 E DG 8 1_555 F DC 3 1_555 E DT 9 1_555 F DA 2 1_555 -0.720 -0.723 3.487 3.076 0.464 31.897 -1.398 1.889 3.394 0.842 -5.581 32.044 16 YY_DG9DT10:DA15DC16_ZZ Y 9 ? Z 16 ? Y 10 ? Z 15 ? # _pdbx_audit_support.funding_organization 'Department of Science and Technology' _pdbx_audit_support.country India _pdbx_audit_support.grant_number SR/SO/HS-05/2009 _pdbx_audit_support.ordinal 1 # _atom_sites.entry_id 5YBD _atom_sites.fract_transf_matrix[1][1] 0.025459 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.004276 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012419 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O P S # loop_