HEADER SIGNALING PROTEIN/PEPTIDE 06-SEP-17 5YC1 TITLE TRAF4_GPIB COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: TNF RECEPTOR-ASSOCIATED FACTOR 4; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 FRAGMENT: UNP RESIDUES 290-470; COMPND 5 SYNONYM: CYSTEINE-RICH DOMAIN ASSOCIATED WITH RING AND TRAF DOMAINS COMPND 6 PROTEIN 1,METASTATIC LYMPH NODE GENE 62 PROTEIN,MLN 62,RING FINGER COMPND 7 PROTEIN 83; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: GPIB PEPTIDE; COMPND 11 CHAIN: G, I, K; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TRAF4, CART1, MLN62, RNF83; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_TAXID: 9606 KEYWDS COMPLEX, PLATELET RECEPTOR, TRAF4, INTERACTION, SIGNALING PROTEIN- KEYWDS 2 PEPTIDE COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR H.H.PARK,C.M.KIM REVDAT 3 27-MAR-24 5YC1 1 REMARK REVDAT 2 15-NOV-17 5YC1 1 JRNL REVDAT 1 11-OCT-17 5YC1 0 JRNL AUTH C.M.KIM,Y.J.SON,S.KIM,S.Y.KIM,H.H.PARK JRNL TITL MOLECULAR BASIS FOR UNIQUE SPECIFICITY OF HUMAN TRAF4 FOR JRNL TITL 2 PLATELETS GPIB BETA AND GPVI JRNL REF PROC. NATL. ACAD. SCI. V. 114 11422 2017 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 29073066 JRNL DOI 10.1073/PNAS.1708688114 REMARK 2 REMARK 2 RESOLUTION. 2.51 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.51 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.78 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.2 REMARK 3 NUMBER OF REFLECTIONS : 38763 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.140 REMARK 3 FREE R VALUE TEST SET COUNT : 1994 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.7842 - 6.0291 0.99 2846 155 0.2096 0.2629 REMARK 3 2 6.0291 - 4.7899 1.00 2785 146 0.1800 0.2331 REMARK 3 3 4.7899 - 4.1857 0.98 2767 153 0.1691 0.2158 REMARK 3 4 4.1857 - 3.8035 0.96 2680 145 0.1891 0.2203 REMARK 3 5 3.8035 - 3.5312 0.94 2616 141 0.2109 0.2386 REMARK 3 6 3.5312 - 3.3232 0.93 2578 140 0.2301 0.3087 REMARK 3 7 3.3232 - 3.1569 0.93 2566 142 0.2309 0.2636 REMARK 3 8 3.1569 - 3.0196 0.93 2592 134 0.2519 0.3061 REMARK 3 9 3.0196 - 2.9034 0.92 2593 142 0.2553 0.3483 REMARK 3 10 2.9034 - 2.8033 0.94 2590 144 0.2565 0.3165 REMARK 3 11 2.8033 - 2.7157 0.94 2585 137 0.2584 0.3336 REMARK 3 12 2.7157 - 2.6381 0.94 2631 146 0.2639 0.3437 REMARK 3 13 2.6381 - 2.5686 0.95 2588 139 0.2708 0.3597 REMARK 3 14 2.5686 - 2.5060 0.84 2352 130 0.2714 0.3531 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.390 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.390 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 8026 REMARK 3 ANGLE : 1.390 10849 REMARK 3 CHIRALITY : 0.059 1112 REMARK 3 PLANARITY : 0.008 1412 REMARK 3 DIHEDRAL : 12.682 2959 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5YC1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-SEP-17. REMARK 100 THE DEPOSITION ID IS D_1300005013. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-SEP-16 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 5C (4A) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 300K REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42567 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MAGNESIUM FORMATE DEHYDRATE, REMARK 280 POLYETHYLENE GLYCOL 3350, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 44.29700 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F, G, K REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 290 REMARK 465 GLU A 291 REMARK 465 LEU A 292 REMARK 465 GLN A 293 REMARK 465 GLU A 294 REMARK 465 LEU A 295 REMARK 465 GLY A 421 REMARK 465 THR A 422 REMARK 465 TRP A 423 REMARK 465 ARG A 424 REMARK 465 GLY A 425 REMARK 465 SER A 426 REMARK 465 LEU A 427 REMARK 465 ASP A 428 REMARK 465 GLU A 429 REMARK 465 SER A 430 REMARK 465 SER A 431 REMARK 465 LEU A 432 REMARK 465 ARG A 466 REMARK 465 LYS A 467 REMARK 465 ILE A 468 REMARK 465 LEU A 469 REMARK 465 SER A 470 REMARK 465 GLN B 290 REMARK 465 GLU B 291 REMARK 465 LEU B 292 REMARK 465 GLN B 293 REMARK 465 GLU B 294 REMARK 465 LEU B 295 REMARK 465 ARG B 296 REMARK 465 ARG B 297 REMARK 465 GLU B 298 REMARK 465 LEU B 299 REMARK 465 ASN B 416 REMARK 465 PHE B 417 REMARK 465 GLN B 418 REMARK 465 LYS B 419 REMARK 465 PRO B 420 REMARK 465 GLY B 421 REMARK 465 THR B 422 REMARK 465 TRP B 423 REMARK 465 ARG B 424 REMARK 465 GLY B 425 REMARK 465 SER B 426 REMARK 465 LEU B 427 REMARK 465 ASP B 428 REMARK 465 GLU B 429 REMARK 465 SER B 430 REMARK 465 SER B 431 REMARK 465 LEU B 432 REMARK 465 ARG B 466 REMARK 465 LYS B 467 REMARK 465 ILE B 468 REMARK 465 LEU B 469 REMARK 465 SER B 470 REMARK 465 GLN C 290 REMARK 465 GLU C 291 REMARK 465 LEU C 292 REMARK 465 GLN C 293 REMARK 465 GLU C 294 REMARK 465 LEU C 295 REMARK 465 ARG C 296 REMARK 465 ARG C 297 REMARK 465 GLY C 397 REMARK 465 LEU C 398 REMARK 465 ALA C 399 REMARK 465 LYS C 400 REMARK 465 TRP C 423 REMARK 465 ARG C 424 REMARK 465 GLY C 425 REMARK 465 SER C 426 REMARK 465 LEU C 427 REMARK 465 ASP C 428 REMARK 465 GLU C 429 REMARK 465 SER C 470 REMARK 465 GLN D 290 REMARK 465 GLU D 291 REMARK 465 LEU D 292 REMARK 465 GLN D 293 REMARK 465 GLU D 294 REMARK 465 GLY D 421 REMARK 465 THR D 422 REMARK 465 TRP D 423 REMARK 465 ARG D 424 REMARK 465 GLY D 425 REMARK 465 SER D 426 REMARK 465 LEU D 427 REMARK 465 ASP D 428 REMARK 465 GLU D 429 REMARK 465 SER D 430 REMARK 465 ARG D 466 REMARK 465 LYS D 467 REMARK 465 ILE D 468 REMARK 465 LEU D 469 REMARK 465 SER D 470 REMARK 465 GLN E 290 REMARK 465 GLU E 291 REMARK 465 LEU E 292 REMARK 465 GLN E 293 REMARK 465 GLU E 294 REMARK 465 LEU E 295 REMARK 465 ARG E 296 REMARK 465 ARG E 297 REMARK 465 SER E 303 REMARK 465 GLY E 421 REMARK 465 THR E 422 REMARK 465 TRP E 423 REMARK 465 ARG E 424 REMARK 465 GLY E 425 REMARK 465 SER E 426 REMARK 465 LEU E 427 REMARK 465 ASP E 428 REMARK 465 GLU E 429 REMARK 465 SER E 430 REMARK 465 SER E 431 REMARK 465 ARG E 466 REMARK 465 LYS E 467 REMARK 465 ILE E 468 REMARK 465 LEU E 469 REMARK 465 SER E 470 REMARK 465 GLN F 290 REMARK 465 GLU F 291 REMARK 465 LEU F 292 REMARK 465 GLN F 293 REMARK 465 GLU F 294 REMARK 465 LEU F 295 REMARK 465 ARG F 296 REMARK 465 ARG F 297 REMARK 465 GLU F 298 REMARK 465 LEU F 299 REMARK 465 TRP F 423 REMARK 465 ARG F 424 REMARK 465 GLY F 425 REMARK 465 SER F 426 REMARK 465 LEU F 427 REMARK 465 ASP F 428 REMARK 465 SER F 470 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU C 463 NH2 ARG C 466 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU G 298 CA - CB - CG ANGL. DEV. = -19.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 342 42.84 -106.26 REMARK 500 LEU A 398 -62.74 -91.61 REMARK 500 LYS A 438 61.51 -117.03 REMARK 500 ARG A 448 -135.16 44.23 REMARK 500 SER B 306 -158.89 -135.34 REMARK 500 TYR B 342 33.24 72.85 REMARK 500 ASN B 413 -44.50 -133.12 REMARK 500 TRP B 414 -78.10 -87.03 REMARK 500 LYS B 438 68.01 -117.83 REMARK 500 ARG B 448 -129.42 45.24 REMARK 500 GLU C 301 -10.49 68.04 REMARK 500 TYR C 342 35.04 70.19 REMARK 500 LEU C 432 -169.62 -164.61 REMARK 500 LYS C 438 63.54 -115.94 REMARK 500 ARG C 448 -129.98 43.59 REMARK 500 ASN D 329 30.65 -82.28 REMARK 500 LYS D 438 64.11 -118.07 REMARK 500 ARG D 448 -131.58 46.32 REMARK 500 LEU E 398 -63.79 -90.00 REMARK 500 LYS E 400 105.46 -53.08 REMARK 500 LYS E 438 68.84 -117.22 REMARK 500 ARG E 448 -130.47 44.42 REMARK 500 GLU F 301 -19.81 82.80 REMARK 500 TYR F 342 33.43 78.19 REMARK 500 LYS F 438 65.59 -115.71 REMARK 500 ARG F 448 -131.78 44.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER C 431 LEU C 432 -32.13 REMARK 500 REMARK 500 REMARK: NULL DBREF 5YC1 A 290 470 UNP Q9BUZ4 TRAF4_HUMAN 290 470 DBREF 5YC1 B 290 470 UNP Q9BUZ4 TRAF4_HUMAN 290 470 DBREF 5YC1 C 290 470 UNP Q9BUZ4 TRAF4_HUMAN 290 470 DBREF 5YC1 D 290 470 UNP Q9BUZ4 TRAF4_HUMAN 290 470 DBREF 5YC1 E 290 470 UNP Q9BUZ4 TRAF4_HUMAN 290 470 DBREF 5YC1 F 290 470 UNP Q9BUZ4 TRAF4_HUMAN 290 470 DBREF 5YC1 G 297 301 PDB 5YC1 5YC1 297 301 DBREF 5YC1 I 297 301 PDB 5YC1 5YC1 297 301 DBREF 5YC1 K 297 301 PDB 5YC1 5YC1 297 301 SEQRES 1 A 181 GLN GLU LEU GLN GLU LEU ARG ARG GLU LEU GLU GLU LEU SEQRES 2 A 181 SER VAL GLY SER ASP GLY VAL LEU ILE TRP LYS ILE GLY SEQRES 3 A 181 SER TYR GLY ARG ARG LEU GLN GLU ALA LYS ALA LYS PRO SEQRES 4 A 181 ASN LEU GLU CYS PHE SER PRO ALA PHE TYR THR HIS LYS SEQRES 5 A 181 TYR GLY TYR LYS LEU GLN VAL SER ALA PHE LEU ASN GLY SEQRES 6 A 181 ASN GLY SER GLY GLU GLY THR HIS LEU SER LEU TYR ILE SEQRES 7 A 181 ARG VAL LEU PRO GLY ALA PHE ASP ASN LEU LEU GLU TRP SEQRES 8 A 181 PRO PHE ALA ARG ARG VAL THR PHE SER LEU LEU ASP GLN SEQRES 9 A 181 SER ASP PRO GLY LEU ALA LYS PRO GLN HIS VAL THR GLU SEQRES 10 A 181 THR PHE HIS PRO ASP PRO ASN TRP LYS ASN PHE GLN LYS SEQRES 11 A 181 PRO GLY THR TRP ARG GLY SER LEU ASP GLU SER SER LEU SEQRES 12 A 181 GLY PHE GLY TYR PRO LYS PHE ILE SER HIS GLN ASP ILE SEQRES 13 A 181 ARG LYS ARG ASN TYR VAL ARG ASP ASP ALA VAL PHE ILE SEQRES 14 A 181 ARG ALA ALA VAL GLU LEU PRO ARG LYS ILE LEU SER SEQRES 1 B 181 GLN GLU LEU GLN GLU LEU ARG ARG GLU LEU GLU GLU LEU SEQRES 2 B 181 SER VAL GLY SER ASP GLY VAL LEU ILE TRP LYS ILE GLY SEQRES 3 B 181 SER TYR GLY ARG ARG LEU GLN GLU ALA LYS ALA LYS PRO SEQRES 4 B 181 ASN LEU GLU CYS PHE SER PRO ALA PHE TYR THR HIS LYS SEQRES 5 B 181 TYR GLY TYR LYS LEU GLN VAL SER ALA PHE LEU ASN GLY SEQRES 6 B 181 ASN GLY SER GLY GLU GLY THR HIS LEU SER LEU TYR ILE SEQRES 7 B 181 ARG VAL LEU PRO GLY ALA PHE ASP ASN LEU LEU GLU TRP SEQRES 8 B 181 PRO PHE ALA ARG ARG VAL THR PHE SER LEU LEU ASP GLN SEQRES 9 B 181 SER ASP PRO GLY LEU ALA LYS PRO GLN HIS VAL THR GLU SEQRES 10 B 181 THR PHE HIS PRO ASP PRO ASN TRP LYS ASN PHE GLN LYS SEQRES 11 B 181 PRO GLY THR TRP ARG GLY SER LEU ASP GLU SER SER LEU SEQRES 12 B 181 GLY PHE GLY TYR PRO LYS PHE ILE SER HIS GLN ASP ILE SEQRES 13 B 181 ARG LYS ARG ASN TYR VAL ARG ASP ASP ALA VAL PHE ILE SEQRES 14 B 181 ARG ALA ALA VAL GLU LEU PRO ARG LYS ILE LEU SER SEQRES 1 C 181 GLN GLU LEU GLN GLU LEU ARG ARG GLU LEU GLU GLU LEU SEQRES 2 C 181 SER VAL GLY SER ASP GLY VAL LEU ILE TRP LYS ILE GLY SEQRES 3 C 181 SER TYR GLY ARG ARG LEU GLN GLU ALA LYS ALA LYS PRO SEQRES 4 C 181 ASN LEU GLU CYS PHE SER PRO ALA PHE TYR THR HIS LYS SEQRES 5 C 181 TYR GLY TYR LYS LEU GLN VAL SER ALA PHE LEU ASN GLY SEQRES 6 C 181 ASN GLY SER GLY GLU GLY THR HIS LEU SER LEU TYR ILE SEQRES 7 C 181 ARG VAL LEU PRO GLY ALA PHE ASP ASN LEU LEU GLU TRP SEQRES 8 C 181 PRO PHE ALA ARG ARG VAL THR PHE SER LEU LEU ASP GLN SEQRES 9 C 181 SER ASP PRO GLY LEU ALA LYS PRO GLN HIS VAL THR GLU SEQRES 10 C 181 THR PHE HIS PRO ASP PRO ASN TRP LYS ASN PHE GLN LYS SEQRES 11 C 181 PRO GLY THR TRP ARG GLY SER LEU ASP GLU SER SER LEU SEQRES 12 C 181 GLY PHE GLY TYR PRO LYS PHE ILE SER HIS GLN ASP ILE SEQRES 13 C 181 ARG LYS ARG ASN TYR VAL ARG ASP ASP ALA VAL PHE ILE SEQRES 14 C 181 ARG ALA ALA VAL GLU LEU PRO ARG LYS ILE LEU SER SEQRES 1 D 181 GLN GLU LEU GLN GLU LEU ARG ARG GLU LEU GLU GLU LEU SEQRES 2 D 181 SER VAL GLY SER ASP GLY VAL LEU ILE TRP LYS ILE GLY SEQRES 3 D 181 SER TYR GLY ARG ARG LEU GLN GLU ALA LYS ALA LYS PRO SEQRES 4 D 181 ASN LEU GLU CYS PHE SER PRO ALA PHE TYR THR HIS LYS SEQRES 5 D 181 TYR GLY TYR LYS LEU GLN VAL SER ALA PHE LEU ASN GLY SEQRES 6 D 181 ASN GLY SER GLY GLU GLY THR HIS LEU SER LEU TYR ILE SEQRES 7 D 181 ARG VAL LEU PRO GLY ALA PHE ASP ASN LEU LEU GLU TRP SEQRES 8 D 181 PRO PHE ALA ARG ARG VAL THR PHE SER LEU LEU ASP GLN SEQRES 9 D 181 SER ASP PRO GLY LEU ALA LYS PRO GLN HIS VAL THR GLU SEQRES 10 D 181 THR PHE HIS PRO ASP PRO ASN TRP LYS ASN PHE GLN LYS SEQRES 11 D 181 PRO GLY THR TRP ARG GLY SER LEU ASP GLU SER SER LEU SEQRES 12 D 181 GLY PHE GLY TYR PRO LYS PHE ILE SER HIS GLN ASP ILE SEQRES 13 D 181 ARG LYS ARG ASN TYR VAL ARG ASP ASP ALA VAL PHE ILE SEQRES 14 D 181 ARG ALA ALA VAL GLU LEU PRO ARG LYS ILE LEU SER SEQRES 1 E 181 GLN GLU LEU GLN GLU LEU ARG ARG GLU LEU GLU GLU LEU SEQRES 2 E 181 SER VAL GLY SER ASP GLY VAL LEU ILE TRP LYS ILE GLY SEQRES 3 E 181 SER TYR GLY ARG ARG LEU GLN GLU ALA LYS ALA LYS PRO SEQRES 4 E 181 ASN LEU GLU CYS PHE SER PRO ALA PHE TYR THR HIS LYS SEQRES 5 E 181 TYR GLY TYR LYS LEU GLN VAL SER ALA PHE LEU ASN GLY SEQRES 6 E 181 ASN GLY SER GLY GLU GLY THR HIS LEU SER LEU TYR ILE SEQRES 7 E 181 ARG VAL LEU PRO GLY ALA PHE ASP ASN LEU LEU GLU TRP SEQRES 8 E 181 PRO PHE ALA ARG ARG VAL THR PHE SER LEU LEU ASP GLN SEQRES 9 E 181 SER ASP PRO GLY LEU ALA LYS PRO GLN HIS VAL THR GLU SEQRES 10 E 181 THR PHE HIS PRO ASP PRO ASN TRP LYS ASN PHE GLN LYS SEQRES 11 E 181 PRO GLY THR TRP ARG GLY SER LEU ASP GLU SER SER LEU SEQRES 12 E 181 GLY PHE GLY TYR PRO LYS PHE ILE SER HIS GLN ASP ILE SEQRES 13 E 181 ARG LYS ARG ASN TYR VAL ARG ASP ASP ALA VAL PHE ILE SEQRES 14 E 181 ARG ALA ALA VAL GLU LEU PRO ARG LYS ILE LEU SER SEQRES 1 F 181 GLN GLU LEU GLN GLU LEU ARG ARG GLU LEU GLU GLU LEU SEQRES 2 F 181 SER VAL GLY SER ASP GLY VAL LEU ILE TRP LYS ILE GLY SEQRES 3 F 181 SER TYR GLY ARG ARG LEU GLN GLU ALA LYS ALA LYS PRO SEQRES 4 F 181 ASN LEU GLU CYS PHE SER PRO ALA PHE TYR THR HIS LYS SEQRES 5 F 181 TYR GLY TYR LYS LEU GLN VAL SER ALA PHE LEU ASN GLY SEQRES 6 F 181 ASN GLY SER GLY GLU GLY THR HIS LEU SER LEU TYR ILE SEQRES 7 F 181 ARG VAL LEU PRO GLY ALA PHE ASP ASN LEU LEU GLU TRP SEQRES 8 F 181 PRO PHE ALA ARG ARG VAL THR PHE SER LEU LEU ASP GLN SEQRES 9 F 181 SER ASP PRO GLY LEU ALA LYS PRO GLN HIS VAL THR GLU SEQRES 10 F 181 THR PHE HIS PRO ASP PRO ASN TRP LYS ASN PHE GLN LYS SEQRES 11 F 181 PRO GLY THR TRP ARG GLY SER LEU ASP GLU SER SER LEU SEQRES 12 F 181 GLY PHE GLY TYR PRO LYS PHE ILE SER HIS GLN ASP ILE SEQRES 13 F 181 ARG LYS ARG ASN TYR VAL ARG ASP ASP ALA VAL PHE ILE SEQRES 14 F 181 ARG ALA ALA VAL GLU LEU PRO ARG LYS ILE LEU SER SEQRES 1 G 5 ARG LEU ARG ALA ARG SEQRES 1 I 5 ARG LEU ARG ALA ARG SEQRES 1 K 5 ARG LEU ARG ALA ARG FORMUL 10 HOH *29(H2 O) HELIX 1 AA1 ARG A 296 GLU A 301 1 6 HELIX 2 AA2 SER A 316 LYS A 327 1 12 HELIX 3 AA3 ASN A 355 GLU A 359 5 5 HELIX 4 AA4 PHE A 374 LEU A 378 5 5 HELIX 5 AA5 TRP A 414 GLN A 418 5 5 HELIX 6 AA6 GLN A 443 LYS A 447 5 5 HELIX 7 AA7 GLU B 300 VAL B 304 5 5 HELIX 8 AA8 SER B 316 LYS B 327 1 12 HELIX 9 AA9 ASN B 355 GLU B 359 5 5 HELIX 10 AB1 PHE B 374 LEU B 378 5 5 HELIX 11 AB2 HIS B 442 ARG B 446 1 5 HELIX 12 AB3 SER C 316 LYS C 327 1 12 HELIX 13 AB4 ASN C 355 GLU C 359 5 5 HELIX 14 AB5 PHE C 374 LEU C 378 5 5 HELIX 15 AB6 TRP C 414 GLN C 418 5 5 HELIX 16 AB7 GLN C 443 LYS C 447 5 5 HELIX 17 AB8 ARG D 296 GLU D 300 5 5 HELIX 18 AB9 SER D 316 LYS D 327 1 12 HELIX 19 AC1 ASN D 355 GLU D 359 5 5 HELIX 20 AC2 PHE D 374 LEU D 378 5 5 HELIX 21 AC3 TRP D 414 GLN D 418 5 5 HELIX 22 AC4 GLN D 443 LYS D 447 5 5 HELIX 23 AC5 GLU E 298 LEU E 302 5 5 HELIX 24 AC6 SER E 316 LYS E 327 1 12 HELIX 25 AC7 ASN E 355 GLU E 359 5 5 HELIX 26 AC8 PHE E 374 LEU E 378 5 5 HELIX 27 AC9 TRP E 414 GLN E 418 5 5 HELIX 28 AD1 GLN E 443 LYS E 447 5 5 HELIX 29 AD2 SER F 316 LYS F 327 1 12 HELIX 30 AD3 ASN F 355 GLU F 359 5 5 HELIX 31 AD4 PHE F 374 LEU F 378 5 5 HELIX 32 AD5 TRP F 414 GLN F 418 5 5 HELIX 33 AD6 GLN F 443 LYS F 447 5 5 SHEET 1 AA1 4 VAL A 309 GLY A 315 0 SHEET 2 AA1 4 ALA A 455 VAL A 462 -1 O ILE A 458 N TRP A 312 SHEET 3 AA1 4 VAL A 386 LEU A 390 -1 N SER A 389 O ARG A 459 SHEET 4 AA1 4 VAL A 404 PHE A 408 -1 O PHE A 408 N VAL A 386 SHEET 1 AA2 3 CYS A 332 PHE A 333 0 SHEET 2 AA2 3 LYS A 345 PHE A 351 -1 O ALA A 350 N CYS A 332 SHEET 3 AA2 3 PHE A 337 TYR A 338 -1 N PHE A 337 O LEU A 346 SHEET 1 AA3 5 CYS A 332 PHE A 333 0 SHEET 2 AA3 5 LYS A 345 PHE A 351 -1 O ALA A 350 N CYS A 332 SHEET 3 AA3 5 HIS A 362 LEU A 370 -1 O LEU A 370 N LYS A 345 SHEET 4 AA3 5 PHE A 434 SER A 441 -1 O ILE A 440 N LEU A 363 SHEET 5 AA3 5 ARG I 299 ALA I 300 -1 O ARG I 299 N GLY A 435 SHEET 1 AA4 4 VAL B 309 GLY B 315 0 SHEET 2 AA4 4 ALA B 455 VAL B 462 -1 O ILE B 458 N TRP B 312 SHEET 3 AA4 4 VAL B 386 LEU B 390 -1 N SER B 389 O ARG B 459 SHEET 4 AA4 4 VAL B 404 PHE B 408 -1 O GLU B 406 N PHE B 388 SHEET 1 AA5 3 CYS B 332 PHE B 333 0 SHEET 2 AA5 3 LYS B 345 PHE B 351 -1 O ALA B 350 N CYS B 332 SHEET 3 AA5 3 PHE B 337 TYR B 338 -1 N PHE B 337 O LEU B 346 SHEET 1 AA6 4 CYS B 332 PHE B 333 0 SHEET 2 AA6 4 LYS B 345 PHE B 351 -1 O ALA B 350 N CYS B 332 SHEET 3 AA6 4 HIS B 362 LEU B 370 -1 O LEU B 370 N LYS B 345 SHEET 4 AA6 4 PHE B 434 SER B 441 -1 O ILE B 440 N LEU B 363 SHEET 1 AA7 4 VAL C 309 GLY C 315 0 SHEET 2 AA7 4 ALA C 455 VAL C 462 -1 O ILE C 458 N TRP C 312 SHEET 3 AA7 4 VAL C 386 LEU C 390 -1 N SER C 389 O ARG C 459 SHEET 4 AA7 4 VAL C 404 PHE C 408 -1 O GLU C 406 N PHE C 388 SHEET 1 AA8 3 CYS C 332 PHE C 333 0 SHEET 2 AA8 3 LYS C 345 PHE C 351 -1 O ALA C 350 N CYS C 332 SHEET 3 AA8 3 PHE C 337 TYR C 338 -1 N PHE C 337 O LEU C 346 SHEET 1 AA9 4 CYS C 332 PHE C 333 0 SHEET 2 AA9 4 LYS C 345 PHE C 351 -1 O ALA C 350 N CYS C 332 SHEET 3 AA9 4 HIS C 362 VAL C 369 -1 O TYR C 366 N SER C 349 SHEET 4 AA9 4 PHE C 434 SER C 441 -1 O ILE C 440 N LEU C 363 SHEET 1 AB1 4 VAL D 309 GLY D 315 0 SHEET 2 AB1 4 ALA D 455 VAL D 462 -1 O ILE D 458 N TRP D 312 SHEET 3 AB1 4 VAL D 386 LEU D 390 -1 N THR D 387 O ALA D 461 SHEET 4 AB1 4 VAL D 404 PHE D 408 -1 O PHE D 408 N VAL D 386 SHEET 1 AB2 3 CYS D 332 PHE D 333 0 SHEET 2 AB2 3 LYS D 345 PHE D 351 -1 O ALA D 350 N CYS D 332 SHEET 3 AB2 3 PHE D 337 TYR D 338 -1 N PHE D 337 O LEU D 346 SHEET 1 AB3 5 CYS D 332 PHE D 333 0 SHEET 2 AB3 5 LYS D 345 PHE D 351 -1 O ALA D 350 N CYS D 332 SHEET 3 AB3 5 HIS D 362 VAL D 369 -1 O TYR D 366 N SER D 349 SHEET 4 AB3 5 PHE D 434 SER D 441 -1 O ILE D 440 N LEU D 363 SHEET 5 AB3 5 ARG G 299 ALA G 300 -1 O ARG G 299 N GLY D 435 SHEET 1 AB4 4 VAL E 309 ILE E 314 0 SHEET 2 AB4 4 VAL E 456 VAL E 462 -1 O ILE E 458 N TRP E 312 SHEET 3 AB4 4 VAL E 386 LEU E 390 -1 N SER E 389 O ARG E 459 SHEET 4 AB4 4 VAL E 404 PHE E 408 -1 O PHE E 408 N VAL E 386 SHEET 1 AB5 4 CYS E 332 TYR E 338 0 SHEET 2 AB5 4 LYS E 345 PHE E 351 -1 O VAL E 348 N SER E 334 SHEET 3 AB5 4 HIS E 362 LEU E 370 -1 O LEU E 370 N LYS E 345 SHEET 4 AB5 4 PHE E 434 SER E 441 -1 O ILE E 440 N LEU E 363 SHEET 1 AB6 4 VAL F 309 GLY F 315 0 SHEET 2 AB6 4 ALA F 455 VAL F 462 -1 O ILE F 458 N TRP F 312 SHEET 3 AB6 4 VAL F 386 LEU F 391 -1 N THR F 387 O ALA F 461 SHEET 4 AB6 4 VAL F 404 PHE F 408 -1 O PHE F 408 N VAL F 386 SHEET 1 AB7 3 CYS F 332 PHE F 333 0 SHEET 2 AB7 3 LYS F 345 PHE F 351 -1 O ALA F 350 N CYS F 332 SHEET 3 AB7 3 PHE F 337 TYR F 338 -1 N PHE F 337 O LEU F 346 SHEET 1 AB8 5 CYS F 332 PHE F 333 0 SHEET 2 AB8 5 LYS F 345 PHE F 351 -1 O ALA F 350 N CYS F 332 SHEET 3 AB8 5 HIS F 362 LEU F 370 -1 O TYR F 366 N SER F 349 SHEET 4 AB8 5 GLY F 433 SER F 441 -1 O ILE F 440 N LEU F 363 SHEET 5 AB8 5 ARG K 299 ARG K 301 -1 O ARG K 299 N GLY F 435 CISPEP 1 TRP A 380 PRO A 381 0 3.70 CISPEP 2 ASP B 307 GLY B 308 0 6.64 CISPEP 3 TRP B 380 PRO B 381 0 3.97 CISPEP 4 SER C 306 ASP C 307 0 -16.23 CISPEP 5 TRP C 380 PRO C 381 0 5.35 CISPEP 6 TRP D 380 PRO D 381 0 2.71 CISPEP 7 VAL E 304 GLY E 305 0 -29.27 CISPEP 8 TRP E 380 PRO E 381 0 4.35 CISPEP 9 GLU F 300 GLU F 301 0 -20.54 CISPEP 10 SER F 306 ASP F 307 0 -0.17 CISPEP 11 PRO F 328 ASN F 329 0 -16.79 CISPEP 12 TRP F 380 PRO F 381 0 4.34 CRYST1 56.716 88.594 120.757 90.00 93.62 90.00 P 1 21 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017632 0.000000 0.001114 0.00000 SCALE2 0.000000 0.011287 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008298 0.00000