HEADER MEMBRANE PROTEIN 06-SEP-17 5YC2 TITLE CRYSTAL STRUCTURE OF INNER MEMBRANE PROTEIN BQT4 IN COMPLEX WITH TITLE 2 TELOMERIC PROTEIN RAP1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN-LIKE PROTEIN SMT3,BOUQUET FORMATION PROTEIN 4; COMPND 3 CHAIN: A, C; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 OTHER_DETAILS: SUMO (RESIDUE 20 TO 92) TAGGED BQT4 (RESIDUE 8 TO COMPND 7 140); COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: DNA-BINDING PROTEIN RAP1; COMPND 10 CHAIN: B, D; COMPND 11 ENGINEERED: YES; COMPND 12 OTHER_DETAILS: BQT4 BINDING MOTIF OF TELOMERIC PROTEIN RAP1 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / SOURCE 3 S288C), SCHIZOSACCHAROMYCES POMBE (STRAIN 972 / ATCC 24843); SOURCE 4 ORGANISM_COMMON: BAKER'S YEAST, FISSION YEAST; SOURCE 5 ORGANISM_TAXID: 559292, 284812; SOURCE 6 STRAIN: ATCC 204508 / S288C, 972 / ATCC 24843; SOURCE 7 GENE: SMT3, YDR510W, D9719.15, BQT4, SPBC19C7.10; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: SCHIZOSACCHAROMYCES POMBE (STRAIN 972 / ATCC SOURCE 13 24843); SOURCE 14 ORGANISM_COMMON: FISSION YEAST; SOURCE 15 ORGANISM_TAXID: 284812; SOURCE 16 STRAIN: 972 / ATCC 24843; SOURCE 17 GENE: RAP1, SPBC1778.02; SOURCE 18 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 19 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 20 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS CHOROMOSOME ORGANIZATION, TELEOMERE BOUQUET, NUCLEAR ENVELOPE, SPORE KEYWDS 2 FORMATION, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.CHEN,C.HU REVDAT 4 22-NOV-23 5YC2 1 REMARK REVDAT 3 10-JUL-19 5YC2 1 JRNL REVDAT 2 05-DEC-18 5YC2 1 JRNL REVDAT 1 14-NOV-18 5YC2 0 JRNL AUTH C.HU,H.INOUE,W.SUN,Y.TAKESHITA,Y.HUANG,Y.XU,J.KANOH,Y.CHEN JRNL TITL STRUCTURAL INSIGHTS INTO CHROMOSOME ATTACHMENT TO THE JRNL TITL 2 NUCLEAR ENVELOPE BY AN INNER NUCLEAR MEMBRANE PROTEIN BQT4 JRNL TITL 3 IN FISSION YEAST. JRNL REF NUCLEIC ACIDS RES. V. 47 1573 2019 JRNL REFN ESSN 1362-4962 JRNL PMID 30462301 JRNL DOI 10.1093/NAR/GKY1186 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.06 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.010 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 12761 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.910 REMARK 3 FREE R VALUE TEST SET COUNT : 626 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 10.0000 - 4.2909 0.98 3049 158 0.1820 0.2194 REMARK 3 2 4.2909 - 3.4064 0.98 3073 149 0.1836 0.2490 REMARK 3 3 3.4064 - 2.9760 0.98 3045 163 0.2340 0.2607 REMARK 3 4 2.9760 - 2.7040 0.96 2968 156 0.2759 0.3241 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.380 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.090 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 46.84 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 3448 REMARK 3 ANGLE : 0.481 4665 REMARK 3 CHIRALITY : 0.043 517 REMARK 3 PLANARITY : 0.004 615 REMARK 3 DIHEDRAL : 11.794 2156 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 11 THROUGH 44 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.7886 43.9956 93.4983 REMARK 3 T TENSOR REMARK 3 T11: 0.5979 T22: 0.5006 REMARK 3 T33: 0.4279 T12: -0.1521 REMARK 3 T13: 0.0660 T23: -0.0593 REMARK 3 L TENSOR REMARK 3 L11: 6.3323 L22: 6.7934 REMARK 3 L33: 4.6917 L12: -0.8591 REMARK 3 L13: 2.9477 L23: 2.2524 REMARK 3 S TENSOR REMARK 3 S11: 0.3872 S12: -0.6819 S13: 0.2364 REMARK 3 S21: 1.0369 S22: -0.1367 S23: 0.2328 REMARK 3 S31: -0.2053 S32: -0.4555 S33: -0.1952 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 45 THROUGH 64 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.2699 40.6067 86.9811 REMARK 3 T TENSOR REMARK 3 T11: 0.4632 T22: 0.5168 REMARK 3 T33: 0.4712 T12: 0.0141 REMARK 3 T13: -0.0580 T23: -0.0947 REMARK 3 L TENSOR REMARK 3 L11: 4.8287 L22: 2.1371 REMARK 3 L33: 8.0290 L12: 1.1847 REMARK 3 L13: 0.0713 L23: 2.4208 REMARK 3 S TENSOR REMARK 3 S11: 0.1759 S12: -0.2413 S13: -0.3379 REMARK 3 S21: 0.4499 S22: -0.5596 S23: 0.4720 REMARK 3 S31: 0.1024 S32: -1.1439 S33: 0.3192 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 65 THROUGH 114 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.9046 33.5783 72.2350 REMARK 3 T TENSOR REMARK 3 T11: 0.3846 T22: 0.3229 REMARK 3 T33: 0.4388 T12: 0.0391 REMARK 3 T13: -0.0037 T23: 0.0136 REMARK 3 L TENSOR REMARK 3 L11: 1.5798 L22: 0.9368 REMARK 3 L33: 6.1335 L12: 1.1304 REMARK 3 L13: 2.0964 L23: 1.4334 REMARK 3 S TENSOR REMARK 3 S11: 0.2272 S12: 0.0288 S13: -0.0946 REMARK 3 S21: 0.3659 S22: 0.0093 S23: -0.1709 REMARK 3 S31: 0.4848 S32: -0.1606 S33: -0.2493 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 115 THROUGH 145 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.9862 37.0738 56.8500 REMARK 3 T TENSOR REMARK 3 T11: 0.2790 T22: 0.4235 REMARK 3 T33: 0.4550 T12: 0.0049 REMARK 3 T13: 0.0326 T23: 0.0558 REMARK 3 L TENSOR REMARK 3 L11: 2.8222 L22: 5.4895 REMARK 3 L33: 5.6775 L12: 2.3976 REMARK 3 L13: 1.5063 L23: 0.4655 REMARK 3 S TENSOR REMARK 3 S11: 0.3900 S12: 0.1175 S13: 0.4643 REMARK 3 S21: -0.0045 S22: 0.4309 S23: 0.6009 REMARK 3 S31: -0.0024 S32: -0.4353 S33: -0.7547 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 146 THROUGH 212 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.5048 42.6413 65.0460 REMARK 3 T TENSOR REMARK 3 T11: 0.2208 T22: 0.3474 REMARK 3 T33: 0.3651 T12: -0.0233 REMARK 3 T13: 0.0315 T23: -0.0483 REMARK 3 L TENSOR REMARK 3 L11: 4.1477 L22: 2.5087 REMARK 3 L33: 4.9406 L12: 1.0060 REMARK 3 L13: -1.9056 L23: 0.2974 REMARK 3 S TENSOR REMARK 3 S11: 0.0601 S12: -0.1791 S13: -0.0420 REMARK 3 S21: 0.0539 S22: 0.3057 S23: -0.4126 REMARK 3 S31: -0.2120 S32: 0.1627 S33: -0.3795 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 4 THROUGH 17 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.3060 38.5970 53.6082 REMARK 3 T TENSOR REMARK 3 T11: 0.5069 T22: 0.6053 REMARK 3 T33: 0.5584 T12: -0.0378 REMARK 3 T13: 0.0295 T23: 0.0602 REMARK 3 L TENSOR REMARK 3 L11: 2.1310 L22: 7.7956 REMARK 3 L33: 2.6304 L12: 3.1329 REMARK 3 L13: -2.0032 L23: -4.4687 REMARK 3 S TENSOR REMARK 3 S11: -0.0263 S12: 0.9845 S13: -0.0875 REMARK 3 S21: -0.1766 S22: 0.3609 S23: 0.7897 REMARK 3 S31: 0.0465 S32: -0.8388 S33: -0.2136 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 13 THROUGH 54 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.1651 45.1612 129.3321 REMARK 3 T TENSOR REMARK 3 T11: 0.5642 T22: 0.3491 REMARK 3 T33: 0.4371 T12: -0.0840 REMARK 3 T13: -0.0963 T23: 0.0625 REMARK 3 L TENSOR REMARK 3 L11: 3.1113 L22: 4.3657 REMARK 3 L33: 8.9700 L12: 1.2611 REMARK 3 L13: -2.1269 L23: 1.0964 REMARK 3 S TENSOR REMARK 3 S11: 0.3411 S12: 0.1633 S13: -0.2164 REMARK 3 S21: 0.6556 S22: -0.1728 S23: -0.6736 REMARK 3 S31: 0.4844 S32: -0.0558 S33: -0.2233 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 55 THROUGH 74 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.4941 54.5202 132.5875 REMARK 3 T TENSOR REMARK 3 T11: 0.5795 T22: 0.3527 REMARK 3 T33: 0.7605 T12: -0.0085 REMARK 3 T13: -0.1877 T23: -0.0708 REMARK 3 L TENSOR REMARK 3 L11: 8.4465 L22: 5.0685 REMARK 3 L33: 5.2346 L12: 1.2166 REMARK 3 L13: -0.6279 L23: 0.1119 REMARK 3 S TENSOR REMARK 3 S11: 0.6745 S12: 0.0227 S13: -0.5660 REMARK 3 S21: 0.8538 S22: -0.0030 S23: -1.4715 REMARK 3 S31: 0.6825 S32: 0.5020 S33: -0.3547 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 75 THROUGH 98 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.4958 60.7890 117.1384 REMARK 3 T TENSOR REMARK 3 T11: 0.7258 T22: 0.4079 REMARK 3 T33: 0.5333 T12: -0.0652 REMARK 3 T13: -0.0225 T23: -0.1603 REMARK 3 L TENSOR REMARK 3 L11: 0.1860 L22: 0.5803 REMARK 3 L33: 5.7139 L12: -0.3619 REMARK 3 L13: 0.8623 L23: -1.7533 REMARK 3 S TENSOR REMARK 3 S11: -0.1650 S12: 0.0249 S13: 0.0780 REMARK 3 S21: 0.3697 S22: 0.1167 S23: -0.1236 REMARK 3 S31: -0.7898 S32: -0.3885 S33: 0.1145 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 99 THROUGH 212 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.5509 59.2044 100.6755 REMARK 3 T TENSOR REMARK 3 T11: 0.3768 T22: 0.3521 REMARK 3 T33: 0.3090 T12: -0.0624 REMARK 3 T13: 0.0290 T23: -0.0156 REMARK 3 L TENSOR REMARK 3 L11: 3.7179 L22: 4.2337 REMARK 3 L33: 5.2036 L12: -0.1267 REMARK 3 L13: 1.1215 L23: -0.6077 REMARK 3 S TENSOR REMARK 3 S11: -0.1049 S12: -0.2548 S13: 0.2043 REMARK 3 S21: 0.2147 S22: 0.0454 S23: 0.1065 REMARK 3 S31: -0.2031 S32: 0.0549 S33: 0.0572 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 3 THROUGH 17 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.5268 66.7214 90.0454 REMARK 3 T TENSOR REMARK 3 T11: 0.4674 T22: 0.4951 REMARK 3 T33: 0.5673 T12: -0.0508 REMARK 3 T13: 0.0361 T23: -0.0318 REMARK 3 L TENSOR REMARK 3 L11: 8.0146 L22: 2.0324 REMARK 3 L33: 8.3027 L12: -3.2473 REMARK 3 L13: -0.4828 L23: -1.9297 REMARK 3 S TENSOR REMARK 3 S11: -0.2110 S12: 0.7564 S13: -0.0225 REMARK 3 S21: 0.7617 S22: -0.1457 S23: 0.2270 REMARK 3 S31: -0.0257 S32: 0.7549 S33: 0.2673 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5YC2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-SEP-17. REMARK 100 THE DEPOSITION ID IS D_1300005017. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-DEC-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NFPSS REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97853 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12761 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 39.056 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 1.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 1.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.32400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.428 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5YBX REMARK 200 REMARK 200 REMARK: SNOWFLAKE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES SODIUM PH 7.5, 10% V/V 2 REMARK 280 -PROPANOL, 20% W/V POLYETHYLENEGLYCOL 4000., VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1040 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 7 REMARK 465 PRO A 8 REMARK 465 GLU A 9 REMARK 465 THR A 10 REMARK 465 THR A 213 REMARK 465 GLY B 3 REMARK 465 SER B 18 REMARK 465 TYR B 19 REMARK 465 SER B 20 REMARK 465 GLY C 7 REMARK 465 PRO C 8 REMARK 465 GLU C 9 REMARK 465 THR C 10 REMARK 465 HIS C 11 REMARK 465 ILE C 12 REMARK 465 THR C 213 REMARK 465 SER D 18 REMARK 465 TYR D 19 REMARK 465 SER D 20 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 22 CD OE1 OE2 REMARK 470 LYS A 26 CD CE NZ REMARK 470 GLU A 38 OE1 OE2 REMARK 470 LYS A 42 CG CD CE NZ REMARK 470 GLU A 47 OE1 OE2 REMARK 470 MET A 48 SD CE REMARK 470 ASP A 49 CG OD1 OD2 REMARK 470 ASP A 63 CG OD1 OD2 REMARK 470 GLU A 67 CG CD OE1 OE2 REMARK 470 LEU A 69 CG CD1 CD2 REMARK 470 LEU A 96 CG CD1 CD2 REMARK 470 LYS A 104 CE NZ REMARK 470 GLU A 111 CG CD OE1 OE2 REMARK 470 GLU A 128 CG CD OE1 OE2 REMARK 470 VAL A 131 CG1 CG2 REMARK 470 LYS A 156 CE NZ REMARK 470 GLU A 160 CG CD OE1 OE2 REMARK 470 ARG A 167 CG CD NE CZ NH1 NH2 REMARK 470 LEU C 33 CG CD1 CD2 REMARK 470 GLU C 47 CG CD OE1 OE2 REMARK 470 MET C 48 CE REMARK 470 ASP C 73 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 70 42.34 -103.67 REMARK 500 LEU A 173 -152.83 -118.82 REMARK 500 LEU C 14 -165.81 -123.18 REMARK 500 ALA C 62 10.30 -68.34 REMARK 500 PRO C 66 1.60 -65.96 REMARK 500 GLU C 72 -169.03 -117.85 REMARK 500 ASN C 174 77.63 -117.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 318 DISTANCE = 6.92 ANGSTROMS DBREF 5YC2 A 8 80 UNP Q12306 SMT3_YEAST 20 92 DBREF 5YC2 A 81 213 UNP O60158 BQT4_SCHPO 8 140 DBREF 5YC2 B 6 20 UNP Q96TL7 RAP1_SCHPO 498 512 DBREF 5YC2 C 8 80 UNP Q12306 SMT3_YEAST 20 92 DBREF 5YC2 C 81 213 UNP O60158 BQT4_SCHPO 8 140 DBREF 5YC2 D 6 20 UNP Q96TL7 RAP1_SCHPO 498 512 SEQADV 5YC2 GLY A 7 UNP Q12306 EXPRESSION TAG SEQADV 5YC2 GLU A 61 UNP Q12306 GLN 73 ENGINEERED MUTATION SEQADV 5YC2 GLY B 3 UNP Q96TL7 EXPRESSION TAG SEQADV 5YC2 PRO B 4 UNP Q96TL7 EXPRESSION TAG SEQADV 5YC2 LEU B 5 UNP Q96TL7 EXPRESSION TAG SEQADV 5YC2 GLY C 7 UNP Q12306 EXPRESSION TAG SEQADV 5YC2 GLU C 61 UNP Q12306 GLN 73 ENGINEERED MUTATION SEQADV 5YC2 GLY D 3 UNP Q96TL7 EXPRESSION TAG SEQADV 5YC2 PRO D 4 UNP Q96TL7 EXPRESSION TAG SEQADV 5YC2 LEU D 5 UNP Q96TL7 EXPRESSION TAG SEQRES 1 A 207 GLY PRO GLU THR HIS ILE ASN LEU LYS VAL SER ASP GLY SEQRES 2 A 207 SER SER GLU ILE PHE PHE LYS ILE LYS LYS THR THR PRO SEQRES 3 A 207 LEU ARG ARG LEU MET GLU ALA PHE ALA LYS ARG GLN GLY SEQRES 4 A 207 LYS GLU MET ASP SER LEU ARG PHE LEU TYR ASP GLY ILE SEQRES 5 A 207 ARG ILE GLU ALA ASP GLN THR PRO GLU ASP LEU ASP MET SEQRES 6 A 207 GLU ASP ASN ASP ILE ILE GLU ALA HIS ARG SER LEU PRO SEQRES 7 A 207 ALA GLU ARG ASN PRO LEU TYR LYS ASP ASP THR LEU ASP SEQRES 8 A 207 HIS THR PRO LEU ILE PRO LYS CYS ARG ALA GLN VAL ILE SEQRES 9 A 207 GLU PHE PRO ASP GLY PRO ALA THR PHE VAL ARG LEU LYS SEQRES 10 A 207 CYS THR ASN PRO GLU SER LYS VAL PRO HIS PHE LEU MET SEQRES 11 A 207 ARG MET ALA LYS ASP SER SER ILE SER ALA THR SER MET SEQRES 12 A 207 PHE ARG SER ALA PHE PRO LYS ALA THR GLN GLU GLU GLU SEQRES 13 A 207 ASP LEU GLU MET ARG TRP ILE ARG ASP ASN LEU ASN PRO SEQRES 14 A 207 ILE GLU ASP LYS ARG VAL ALA GLY LEU TRP VAL PRO PRO SEQRES 15 A 207 ALA ASP ALA LEU ALA LEU ALA LYS ASP TYR SER MET THR SEQRES 16 A 207 PRO PHE ILE ASN ALA LEU LEU GLU ALA SER SER THR SEQRES 1 B 18 GLY PRO LEU ASP ASP GLU GLU ALA PHE GLU LYS GLN VAL SEQRES 2 B 18 THR SER SER TYR SER SEQRES 1 C 207 GLY PRO GLU THR HIS ILE ASN LEU LYS VAL SER ASP GLY SEQRES 2 C 207 SER SER GLU ILE PHE PHE LYS ILE LYS LYS THR THR PRO SEQRES 3 C 207 LEU ARG ARG LEU MET GLU ALA PHE ALA LYS ARG GLN GLY SEQRES 4 C 207 LYS GLU MET ASP SER LEU ARG PHE LEU TYR ASP GLY ILE SEQRES 5 C 207 ARG ILE GLU ALA ASP GLN THR PRO GLU ASP LEU ASP MET SEQRES 6 C 207 GLU ASP ASN ASP ILE ILE GLU ALA HIS ARG SER LEU PRO SEQRES 7 C 207 ALA GLU ARG ASN PRO LEU TYR LYS ASP ASP THR LEU ASP SEQRES 8 C 207 HIS THR PRO LEU ILE PRO LYS CYS ARG ALA GLN VAL ILE SEQRES 9 C 207 GLU PHE PRO ASP GLY PRO ALA THR PHE VAL ARG LEU LYS SEQRES 10 C 207 CYS THR ASN PRO GLU SER LYS VAL PRO HIS PHE LEU MET SEQRES 11 C 207 ARG MET ALA LYS ASP SER SER ILE SER ALA THR SER MET SEQRES 12 C 207 PHE ARG SER ALA PHE PRO LYS ALA THR GLN GLU GLU GLU SEQRES 13 C 207 ASP LEU GLU MET ARG TRP ILE ARG ASP ASN LEU ASN PRO SEQRES 14 C 207 ILE GLU ASP LYS ARG VAL ALA GLY LEU TRP VAL PRO PRO SEQRES 15 C 207 ALA ASP ALA LEU ALA LEU ALA LYS ASP TYR SER MET THR SEQRES 16 C 207 PRO PHE ILE ASN ALA LEU LEU GLU ALA SER SER THR SEQRES 1 D 18 GLY PRO LEU ASP ASP GLU GLU ALA PHE GLU LYS GLN VAL SEQRES 2 D 18 THR SER SER TYR SER FORMUL 5 HOH *33(H2 O) HELIX 1 AA1 PRO A 32 GLN A 44 1 13 HELIX 2 AA2 GLU A 47 ASP A 49 5 3 HELIX 3 AA3 ASN A 88 LYS A 92 5 5 HELIX 4 AA4 HIS A 98 ILE A 102 5 5 HELIX 5 AA5 ALA A 146 PHE A 154 1 9 HELIX 6 AA6 THR A 158 LEU A 173 1 16 HELIX 7 AA7 PRO A 187 TYR A 198 1 12 HELIX 8 AA8 MET A 200 GLU A 209 1 10 HELIX 9 AA9 ASP B 6 THR B 16 1 11 HELIX 10 AB1 LEU C 33 GLN C 44 1 12 HELIX 11 AB2 GLU C 47 ASP C 49 5 3 HELIX 12 AB3 ASN C 88 LYS C 92 5 5 HELIX 13 AB4 HIS C 98 ILE C 102 5 5 HELIX 14 AB5 ALA C 146 PHE C 154 1 9 HELIX 15 AB6 THR C 158 LEU C 173 1 16 HELIX 16 AB7 PRO C 187 SER C 199 1 13 HELIX 17 AB8 MET C 200 ALA C 210 1 11 HELIX 18 AB9 PRO D 4 THR D 16 1 13 SHEET 1 AA1 5 GLU A 22 ILE A 27 0 SHEET 2 AA1 5 ILE A 12 SER A 17 -1 N LEU A 14 O PHE A 25 SHEET 3 AA1 5 ASP A 75 ARG A 81 1 O ILE A 77 N LYS A 15 SHEET 4 AA1 5 LEU A 51 TYR A 55 -1 N ARG A 52 O HIS A 80 SHEET 5 AA1 5 ILE A 58 ARG A 59 -1 O ILE A 58 N TYR A 55 SHEET 1 AA2 3 ARG A 106 PHE A 112 0 SHEET 2 AA2 3 GLY A 115 CYS A 124 -1 O PHE A 119 N GLN A 108 SHEET 3 AA2 3 HIS A 133 MET A 138 -1 O LEU A 135 N LEU A 122 SHEET 1 AA3 3 ILE A 144 SER A 145 0 SHEET 2 AA3 3 VAL A 181 VAL A 186 -1 O VAL A 186 N ILE A 144 SHEET 3 AA3 3 ILE A 176 ASP A 178 -1 N ILE A 176 O TRP A 185 SHEET 1 AA4 5 GLU C 22 PHE C 24 0 SHEET 2 AA4 5 LEU C 14 SER C 17 -1 N VAL C 16 O ILE C 23 SHEET 3 AA4 5 ASP C 75 ARG C 81 1 O ILE C 77 N LYS C 15 SHEET 4 AA4 5 LEU C 51 TYR C 55 -1 N ARG C 52 O HIS C 80 SHEET 5 AA4 5 ILE C 58 ARG C 59 -1 O ILE C 58 N TYR C 55 SHEET 1 AA5 3 ARG C 106 PHE C 112 0 SHEET 2 AA5 3 GLY C 115 THR C 125 -1 O PHE C 119 N GLN C 108 SHEET 3 AA5 3 PRO C 132 MET C 138 -1 O HIS C 133 N CYS C 124 SHEET 1 AA6 3 ILE C 144 SER C 145 0 SHEET 2 AA6 3 VAL C 181 VAL C 186 -1 O VAL C 186 N ILE C 144 SHEET 3 AA6 3 ILE C 176 ASP C 178 -1 N ILE C 176 O TRP C 185 CRYST1 32.154 51.293 79.669 94.92 100.56 105.00 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.031100 0.008334 0.007034 0.00000 SCALE2 0.000000 0.020184 0.002859 0.00000 SCALE3 0.000000 0.000000 0.012895 0.00000