HEADER TRANSFERASE 07-SEP-17 5YCB TITLE CRYSTAL STRUCTURE OF NOTOTHENIA CORIICEPS ADENYLATE KINASE VARIANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADENYLATE KINASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NOTOTHENIA CORIICEPS; SOURCE 3 ORGANISM_TAXID: 8208; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PHOSPHORYLATION, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR E.BAE,J.KIM,S.MOON REVDAT 3 22-NOV-23 5YCB 1 REMARK REVDAT 2 19-SEP-18 5YCB 1 JRNL REVDAT 1 12-SEP-18 5YCB 0 JRNL AUTH E.BAE,J.KIM,S.MOON JRNL TITL CRYSTAL STRUCTURE OF NOTOTHENIA CORIICEPS ADENYLATE KINASE JRNL TITL 2 VARIANT JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.27 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.27 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.65 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 22335 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1117 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.6566 - 4.5419 1.00 2832 149 0.1657 0.1913 REMARK 3 2 4.5419 - 3.6060 1.00 2693 141 0.1422 0.1917 REMARK 3 3 3.6060 - 3.1505 1.00 2653 141 0.1711 0.2219 REMARK 3 4 3.1505 - 2.8626 1.00 2639 139 0.1836 0.2583 REMARK 3 5 2.8626 - 2.6574 1.00 2617 137 0.1751 0.2444 REMARK 3 6 2.6574 - 2.5008 1.00 2612 138 0.1837 0.2272 REMARK 3 7 2.5008 - 2.3756 1.00 2611 137 0.1885 0.2612 REMARK 3 8 2.3756 - 2.2722 0.99 2561 135 0.1959 0.2666 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.460 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3067 REMARK 3 ANGLE : 1.180 4141 REMARK 3 CHIRALITY : 0.041 458 REMARK 3 PLANARITY : 0.005 508 REMARK 3 DIHEDRAL : 14.953 1163 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 22 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 5 THROUGH 20 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.5657 -6.0630 -15.3884 REMARK 3 T TENSOR REMARK 3 T11: 0.3153 T22: 0.5269 REMARK 3 T33: 0.3221 T12: -0.0976 REMARK 3 T13: 0.0838 T23: -0.0825 REMARK 3 L TENSOR REMARK 3 L11: 3.8792 L22: 5.7893 REMARK 3 L33: 3.2029 L12: -2.6664 REMARK 3 L13: -0.7840 L23: -1.0677 REMARK 3 S TENSOR REMARK 3 S11: 0.1754 S12: -0.2554 S13: 0.2823 REMARK 3 S21: 0.4322 S22: 0.1659 S23: -0.3876 REMARK 3 S31: -0.0164 S32: 0.9743 S33: -0.2874 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 21 THROUGH 34 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.6107 1.7935 -23.0597 REMARK 3 T TENSOR REMARK 3 T11: 0.4169 T22: 0.3356 REMARK 3 T33: 0.3341 T12: -0.0662 REMARK 3 T13: 0.0924 T23: 0.0375 REMARK 3 L TENSOR REMARK 3 L11: 6.6456 L22: 8.4509 REMARK 3 L33: 3.1874 L12: 3.8553 REMARK 3 L13: 1.5870 L23: 2.5701 REMARK 3 S TENSOR REMARK 3 S11: 0.2622 S12: 0.0724 S13: 0.2629 REMARK 3 S21: -0.2302 S22: -0.3365 S23: -0.6382 REMARK 3 S31: -0.4095 S32: 0.1663 S33: -0.0376 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 35 THROUGH 49 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.0023 -13.0795 -25.4085 REMARK 3 T TENSOR REMARK 3 T11: 0.3617 T22: 0.3786 REMARK 3 T33: 0.3418 T12: 0.0204 REMARK 3 T13: 0.0772 T23: 0.0475 REMARK 3 L TENSOR REMARK 3 L11: 3.6393 L22: 6.8800 REMARK 3 L33: 2.0678 L12: -2.1761 REMARK 3 L13: -0.4537 L23: 1.4758 REMARK 3 S TENSOR REMARK 3 S11: 0.5972 S12: 0.4940 S13: 0.6098 REMARK 3 S21: -0.8609 S22: -0.5763 S23: -0.5842 REMARK 3 S31: -0.0081 S32: 0.0280 S33: -0.0334 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 50 THROUGH 68 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.5826 -24.7416 -27.3090 REMARK 3 T TENSOR REMARK 3 T11: 0.3737 T22: 0.3543 REMARK 3 T33: 0.2634 T12: 0.0374 REMARK 3 T13: 0.0128 T23: -0.0392 REMARK 3 L TENSOR REMARK 3 L11: 9.5767 L22: 6.3203 REMARK 3 L33: 3.6524 L12: -2.0511 REMARK 3 L13: 0.1881 L23: 0.1193 REMARK 3 S TENSOR REMARK 3 S11: 0.3758 S12: 0.3301 S13: -0.6598 REMARK 3 S21: -0.4585 S22: -0.2519 S23: 0.3519 REMARK 3 S31: 0.1490 S32: -0.0750 S33: 0.0912 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 69 THROUGH 82 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.8683 -15.2308 -15.2538 REMARK 3 T TENSOR REMARK 3 T11: 0.2050 T22: 0.4277 REMARK 3 T33: 0.3017 T12: -0.0280 REMARK 3 T13: -0.0052 T23: -0.0016 REMARK 3 L TENSOR REMARK 3 L11: 6.0237 L22: 8.0957 REMARK 3 L33: 2.7657 L12: -0.2011 REMARK 3 L13: -1.0003 L23: 0.3995 REMARK 3 S TENSOR REMARK 3 S11: 0.3250 S12: -0.7895 S13: 0.1520 REMARK 3 S21: 0.2601 S22: -0.5772 S23: -0.9376 REMARK 3 S31: -0.0355 S32: 0.1730 S33: 0.0062 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 83 THROUGH 98 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.3289 -7.0333 -15.9895 REMARK 3 T TENSOR REMARK 3 T11: 0.2341 T22: 0.3909 REMARK 3 T33: 0.4214 T12: -0.0177 REMARK 3 T13: 0.0494 T23: -0.0164 REMARK 3 L TENSOR REMARK 3 L11: 8.3204 L22: 4.9714 REMARK 3 L33: 3.9934 L12: 0.3898 REMARK 3 L13: -0.3334 L23: -0.6146 REMARK 3 S TENSOR REMARK 3 S11: 0.1966 S12: -0.4184 S13: 0.5549 REMARK 3 S21: 0.1289 S22: -0.1665 S23: -0.9587 REMARK 3 S31: -0.3137 S32: 0.5423 S33: 0.0874 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 99 THROUGH 108 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.7667 -17.0486 -8.3515 REMARK 3 T TENSOR REMARK 3 T11: 0.2715 T22: 0.4115 REMARK 3 T33: 0.3847 T12: 0.0790 REMARK 3 T13: 0.0366 T23: 0.0478 REMARK 3 L TENSOR REMARK 3 L11: 2.4787 L22: 6.3602 REMARK 3 L33: 7.3690 L12: 0.9838 REMARK 3 L13: 0.7259 L23: 1.3449 REMARK 3 S TENSOR REMARK 3 S11: -0.3492 S12: -0.1865 S13: -0.9729 REMARK 3 S21: 0.1496 S22: 0.2761 S23: -0.3019 REMARK 3 S31: 0.4989 S32: 1.0470 S33: 0.0927 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 109 THROUGH 121 ) REMARK 3 ORIGIN FOR THE GROUP (A): -34.9485 -6.5860 -15.4323 REMARK 3 T TENSOR REMARK 3 T11: 0.1936 T22: 0.2317 REMARK 3 T33: 0.3041 T12: -0.0337 REMARK 3 T13: -0.0007 T23: -0.0019 REMARK 3 L TENSOR REMARK 3 L11: 6.7582 L22: 4.0749 REMARK 3 L33: 6.0090 L12: -1.5987 REMARK 3 L13: -0.2480 L23: -0.6620 REMARK 3 S TENSOR REMARK 3 S11: 0.0051 S12: -0.6868 S13: 0.1128 REMARK 3 S21: -0.0993 S22: 0.0370 S23: -0.1409 REMARK 3 S31: -0.3946 S32: -0.7176 S33: -0.0486 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 122 THROUGH 156 ) REMARK 3 ORIGIN FOR THE GROUP (A): -36.6219 -16.0274 -32.9591 REMARK 3 T TENSOR REMARK 3 T11: 0.4107 T22: 0.4875 REMARK 3 T33: 0.4167 T12: 0.0791 REMARK 3 T13: -0.0329 T23: -0.0524 REMARK 3 L TENSOR REMARK 3 L11: 7.9560 L22: 7.9439 REMARK 3 L33: 5.0260 L12: -2.8134 REMARK 3 L13: 3.1711 L23: 0.5381 REMARK 3 S TENSOR REMARK 3 S11: 0.4903 S12: 1.2540 S13: -0.4996 REMARK 3 S21: -1.2634 S22: -0.5843 S23: 0.3654 REMARK 3 S31: 0.4098 S32: 0.3046 S33: 0.0933 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 157 THROUGH 167 ) REMARK 3 ORIGIN FOR THE GROUP (A): -38.7585 -12.4580 -11.2318 REMARK 3 T TENSOR REMARK 3 T11: 0.2573 T22: 0.3665 REMARK 3 T33: 0.3192 T12: -0.0193 REMARK 3 T13: 0.0601 T23: 0.0280 REMARK 3 L TENSOR REMARK 3 L11: 3.7210 L22: 6.6981 REMARK 3 L33: 7.6750 L12: -0.7143 REMARK 3 L13: -0.4031 L23: 0.7248 REMARK 3 S TENSOR REMARK 3 S11: 0.1672 S12: -0.6192 S13: -0.4208 REMARK 3 S21: -0.2221 S22: -0.2419 S23: 0.5328 REMARK 3 S31: -0.0062 S32: -0.6760 S33: 0.1761 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 168 THROUGH 178 ) REMARK 3 ORIGIN FOR THE GROUP (A): -41.0329 -1.8672 -20.4813 REMARK 3 T TENSOR REMARK 3 T11: 0.2727 T22: 0.3475 REMARK 3 T33: 0.3357 T12: 0.0793 REMARK 3 T13: 0.0134 T23: -0.0512 REMARK 3 L TENSOR REMARK 3 L11: 5.9262 L22: 4.4900 REMARK 3 L33: 4.0100 L12: -1.6404 REMARK 3 L13: 3.3038 L23: -3.9124 REMARK 3 S TENSOR REMARK 3 S11: 0.0209 S12: 0.3151 S13: 0.1085 REMARK 3 S21: -0.0108 S22: -0.1144 S23: -0.0032 REMARK 3 S31: -0.6729 S32: -0.6531 S33: 0.1660 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 179 THROUGH 193 ) REMARK 3 ORIGIN FOR THE GROUP (A): -35.8837 5.5051 -20.5070 REMARK 3 T TENSOR REMARK 3 T11: 0.4922 T22: 0.3431 REMARK 3 T33: 0.4310 T12: 0.0392 REMARK 3 T13: 0.1270 T23: 0.0543 REMARK 3 L TENSOR REMARK 3 L11: 7.5116 L22: 5.0068 REMARK 3 L33: 3.9744 L12: 1.0012 REMARK 3 L13: -1.6140 L23: 3.9846 REMARK 3 S TENSOR REMARK 3 S11: 0.7644 S12: -0.0007 S13: 0.8213 REMARK 3 S21: -0.2863 S22: -0.0115 S23: 0.3796 REMARK 3 S31: -1.5149 S32: -0.4057 S33: -0.7094 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 8 THROUGH 20 ) REMARK 3 ORIGIN FOR THE GROUP (A): -49.7903 -22.6954 2.0337 REMARK 3 T TENSOR REMARK 3 T11: 0.2908 T22: 0.4106 REMARK 3 T33: 0.3109 T12: -0.0475 REMARK 3 T13: -0.0476 T23: 0.0901 REMARK 3 L TENSOR REMARK 3 L11: 5.0204 L22: 7.7413 REMARK 3 L33: 2.8931 L12: -0.6603 REMARK 3 L13: -0.4178 L23: 1.7923 REMARK 3 S TENSOR REMARK 3 S11: 0.0005 S12: -0.4861 S13: 0.0490 REMARK 3 S21: 0.1676 S22: 0.2390 S23: -0.7515 REMARK 3 S31: -0.3161 S32: 0.0126 S33: -0.1345 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 21 THROUGH 49 ) REMARK 3 ORIGIN FOR THE GROUP (A): -57.9043 -26.0229 5.9735 REMARK 3 T TENSOR REMARK 3 T11: 0.3070 T22: 0.4746 REMARK 3 T33: 0.3255 T12: -0.0900 REMARK 3 T13: -0.0132 T23: 0.1201 REMARK 3 L TENSOR REMARK 3 L11: 2.9141 L22: 0.9283 REMARK 3 L33: 1.0522 L12: -0.1753 REMARK 3 L13: 1.1946 L23: 0.2850 REMARK 3 S TENSOR REMARK 3 S11: 0.1596 S12: -0.5025 S13: -0.2095 REMARK 3 S21: 0.2292 S22: -0.1373 S23: 0.0414 REMARK 3 S31: -0.0258 S32: 0.0266 S33: -0.0511 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 50 THROUGH 63 ) REMARK 3 ORIGIN FOR THE GROUP (A): -70.1812 -22.4915 -9.0617 REMARK 3 T TENSOR REMARK 3 T11: 0.3353 T22: 0.4983 REMARK 3 T33: 0.3332 T12: -0.0019 REMARK 3 T13: -0.0752 T23: 0.0484 REMARK 3 L TENSOR REMARK 3 L11: 4.3340 L22: 8.1023 REMARK 3 L33: 4.4455 L12: -3.3556 REMARK 3 L13: -4.3600 L23: 3.9678 REMARK 3 S TENSOR REMARK 3 S11: 0.3855 S12: 1.1260 S13: -0.1052 REMARK 3 S21: -0.6738 S22: -0.5096 S23: 0.5524 REMARK 3 S31: -0.3045 S32: -0.4099 S33: 0.1090 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 64 THROUGH 82 ) REMARK 3 ORIGIN FOR THE GROUP (A): -61.7310 -15.0044 -1.6618 REMARK 3 T TENSOR REMARK 3 T11: 0.2850 T22: 0.4132 REMARK 3 T33: 0.4079 T12: 0.0191 REMARK 3 T13: -0.0017 T23: 0.0971 REMARK 3 L TENSOR REMARK 3 L11: 6.0809 L22: 6.6461 REMARK 3 L33: 5.4771 L12: 2.0433 REMARK 3 L13: 1.5125 L23: 4.8332 REMARK 3 S TENSOR REMARK 3 S11: 0.1206 S12: -0.1456 S13: 0.6950 REMARK 3 S21: -0.3769 S22: -0.2326 S23: 0.5442 REMARK 3 S31: -0.6039 S32: -0.5624 S33: 0.2399 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 83 THROUGH 108 ) REMARK 3 ORIGIN FOR THE GROUP (A): -54.1787 -14.6537 2.1268 REMARK 3 T TENSOR REMARK 3 T11: 0.1655 T22: 0.3317 REMARK 3 T33: 0.3566 T12: -0.0148 REMARK 3 T13: -0.0096 T23: 0.0482 REMARK 3 L TENSOR REMARK 3 L11: 7.8956 L22: 6.0317 REMARK 3 L33: 6.9535 L12: 0.1001 REMARK 3 L13: -1.4924 L23: 0.4261 REMARK 3 S TENSOR REMARK 3 S11: 0.2121 S12: -0.2851 S13: 0.4433 REMARK 3 S21: -0.1167 S22: -0.1638 S23: 0.2676 REMARK 3 S31: -0.3024 S32: -0.3919 S33: -0.1162 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 109 THROUGH 121 ) REMARK 3 ORIGIN FOR THE GROUP (A): -45.5718 -21.0599 0.5720 REMARK 3 T TENSOR REMARK 3 T11: 0.2385 T22: 0.3102 REMARK 3 T33: 0.2812 T12: 0.0223 REMARK 3 T13: 0.0308 T23: 0.1127 REMARK 3 L TENSOR REMARK 3 L11: 4.9235 L22: 7.0089 REMARK 3 L33: 4.0570 L12: -0.8591 REMARK 3 L13: 1.0059 L23: 3.7252 REMARK 3 S TENSOR REMARK 3 S11: 0.4445 S12: 0.1501 S13: 0.0939 REMARK 3 S21: -0.5373 S22: -0.3880 S23: -1.0051 REMARK 3 S31: -0.0780 S32: 0.0465 S33: -0.2185 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 122 THROUGH 136 ) REMARK 3 ORIGIN FOR THE GROUP (A): -53.7623 -40.0220 -6.5613 REMARK 3 T TENSOR REMARK 3 T11: 0.4763 T22: 0.4483 REMARK 3 T33: 0.7761 T12: 0.0398 REMARK 3 T13: -0.0979 T23: -0.0176 REMARK 3 L TENSOR REMARK 3 L11: 2.8248 L22: 9.2657 REMARK 3 L33: 7.7438 L12: 0.5384 REMARK 3 L13: -0.1146 L23: 1.9807 REMARK 3 S TENSOR REMARK 3 S11: 0.0500 S12: 0.6955 S13: -1.7391 REMARK 3 S21: -0.5144 S22: 0.0162 S23: 0.7157 REMARK 3 S31: 0.8828 S32: -0.4369 S33: -0.0099 REMARK 3 TLS GROUP : 20 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 137 THROUGH 156 ) REMARK 3 ORIGIN FOR THE GROUP (A): -56.1016 -30.7013 -13.0457 REMARK 3 T TENSOR REMARK 3 T11: 0.3729 T22: 0.5260 REMARK 3 T33: 0.3501 T12: 0.0661 REMARK 3 T13: -0.0148 T23: -0.0213 REMARK 3 L TENSOR REMARK 3 L11: 4.6083 L22: 9.8927 REMARK 3 L33: 3.6388 L12: 4.4356 REMARK 3 L13: 0.5068 L23: -0.9085 REMARK 3 S TENSOR REMARK 3 S11: -0.2797 S12: 1.0063 S13: -0.5274 REMARK 3 S21: -0.7342 S22: 0.4049 S23: 0.1009 REMARK 3 S31: 0.0243 S32: -0.3968 S33: -0.0426 REMARK 3 TLS GROUP : 21 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 157 THROUGH 178 ) REMARK 3 ORIGIN FOR THE GROUP (A): -42.0077 -22.6334 -2.5785 REMARK 3 T TENSOR REMARK 3 T11: 0.2186 T22: 0.3561 REMARK 3 T33: 0.4102 T12: -0.0330 REMARK 3 T13: -0.0253 T23: 0.1030 REMARK 3 L TENSOR REMARK 3 L11: 2.0548 L22: 7.0415 REMARK 3 L33: 1.0806 L12: 1.2497 REMARK 3 L13: -1.1366 L23: -0.6314 REMARK 3 S TENSOR REMARK 3 S11: 0.2160 S12: -0.1278 S13: -0.2135 REMARK 3 S21: 0.0512 S22: -0.0921 S23: -0.6724 REMARK 3 S31: 0.0385 S32: -0.0876 S33: -0.0225 REMARK 3 TLS GROUP : 22 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 179 THROUGH 193 ) REMARK 3 ORIGIN FOR THE GROUP (A): -42.0192 -29.7479 9.6042 REMARK 3 T TENSOR REMARK 3 T11: 0.3320 T22: 0.5450 REMARK 3 T33: 0.4798 T12: -0.0677 REMARK 3 T13: -0.1143 T23: 0.2206 REMARK 3 L TENSOR REMARK 3 L11: 4.6600 L22: 8.8752 REMARK 3 L33: 5.9800 L12: -1.1457 REMARK 3 L13: -0.7935 L23: 0.5915 REMARK 3 S TENSOR REMARK 3 S11: -0.0733 S12: -0.8172 S13: -0.4098 REMARK 3 S21: 0.6852 S22: -0.3062 S23: -0.2727 REMARK 3 S31: -0.2645 S32: 0.4189 S33: 0.0915 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5YCB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-SEP-17. REMARK 100 THE DEPOSITION ID IS D_1300004935. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JUL-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 7A (6B, 6C1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97933 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22461 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.270 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 23.20 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 38.6300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.27 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.35 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 20.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.970 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 5X6K REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.26M LITHIUM SULFATE, 45% PEG400, REMARK 280 0.1M ACETATE PH4.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.10850 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 52.64200 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 52.64200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 21.05425 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 52.64200 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 52.64200 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 63.16275 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 52.64200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 52.64200 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 21.05425 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 52.64200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 52.64200 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 63.16275 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 42.10850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 40 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ASP A 3 REMARK 465 LYS A 4 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 ASP B 3 REMARK 465 LYS B 4 REMARK 465 ILE B 5 REMARK 465 LYS B 6 REMARK 465 ASP B 7 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 109 -62.45 -133.03 REMARK 500 ILE B 109 -69.05 -128.75 REMARK 500 SER B 136 86.95 -169.78 REMARK 500 ASP B 141 30.59 -88.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AP5 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AP5 B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 202 DBREF 5YCB A 1 193 PDB 5YCB 5YCB 1 193 DBREF 5YCB B 1 193 PDB 5YCB 5YCB 1 193 SEQRES 1 A 193 MET ALA ASP LYS ILE LYS ASP ALA LYS ILE ILE PHE VAL SEQRES 2 A 193 VAL GLY GLY PRO GLY SER GLY LYS GLY THR GLN CYS GLU SEQRES 3 A 193 LYS VAL VAL ALA LYS TYR GLY TYR THR HIS LEU SER SER SEQRES 4 A 193 GLY ASP LEU LEU ARG ALA GLU VAL SER SER GLY SER GLU SEQRES 5 A 193 ARG GLY LYS GLN LEU GLN ALA ILE MET GLN LYS GLY GLU SEQRES 6 A 193 LEU VAL PRO LEU ASP THR VAL LEU ASP MET ILE LYS ASP SEQRES 7 A 193 ALA MET ILE ALA LYS ALA ASP VAL SER LYS GLY TYR LEU SEQRES 8 A 193 ILE ASP GLY TYR PRO ARG GLU VAL LYS GLN GLY GLU GLU SEQRES 9 A 193 PHE GLU LYS LYS ILE GLY LYS PRO CYS LEU LEU LEU TYR SEQRES 10 A 193 ILE ASP ALA LYS GLY GLU THR MET VAL LYS ARG LEU MET SEQRES 11 A 193 LYS ARG GLY GLU THR SER GLY ARG ALA ASP ASP ASN GLU SEQRES 12 A 193 GLU THR ILE LYS LYS ARG LEU ASP LEU TYR TYR LYS ALA SEQRES 13 A 193 THR GLU PRO VAL ILE ALA PHE TYR GLU GLY ARG GLY ILE SEQRES 14 A 193 VAL ARG LYS ILE ASP SER GLU LEU PRO VAL ASP GLU VAL SEQRES 15 A 193 PHE LYS GLN VAL SER THR ALA ILE ASP ALA LEU SEQRES 1 B 193 MET ALA ASP LYS ILE LYS ASP ALA LYS ILE ILE PHE VAL SEQRES 2 B 193 VAL GLY GLY PRO GLY SER GLY LYS GLY THR GLN CYS GLU SEQRES 3 B 193 LYS VAL VAL ALA LYS TYR GLY TYR THR HIS LEU SER SER SEQRES 4 B 193 GLY ASP LEU LEU ARG ALA GLU VAL SER SER GLY SER GLU SEQRES 5 B 193 ARG GLY LYS GLN LEU GLN ALA ILE MET GLN LYS GLY GLU SEQRES 6 B 193 LEU VAL PRO LEU ASP THR VAL LEU ASP MET ILE LYS ASP SEQRES 7 B 193 ALA MET ILE ALA LYS ALA ASP VAL SER LYS GLY TYR LEU SEQRES 8 B 193 ILE ASP GLY TYR PRO ARG GLU VAL LYS GLN GLY GLU GLU SEQRES 9 B 193 PHE GLU LYS LYS ILE GLY LYS PRO CYS LEU LEU LEU TYR SEQRES 10 B 193 ILE ASP ALA LYS GLY GLU THR MET VAL LYS ARG LEU MET SEQRES 11 B 193 LYS ARG GLY GLU THR SER GLY ARG ALA ASP ASP ASN GLU SEQRES 12 B 193 GLU THR ILE LYS LYS ARG LEU ASP LEU TYR TYR LYS ALA SEQRES 13 B 193 THR GLU PRO VAL ILE ALA PHE TYR GLU GLY ARG GLY ILE SEQRES 14 B 193 VAL ARG LYS ILE ASP SER GLU LEU PRO VAL ASP GLU VAL SEQRES 15 B 193 PHE LYS GLN VAL SER THR ALA ILE ASP ALA LEU HET AP5 A 201 57 HET SO4 A 202 5 HET AP5 B 201 57 HET SO4 B 202 5 HETNAM AP5 BIS(ADENOSINE)-5'-PENTAPHOSPHATE HETNAM SO4 SULFATE ION FORMUL 3 AP5 2(C20 H29 N10 O22 P5) FORMUL 4 SO4 2(O4 S 2-) FORMUL 7 HOH *82(H2 O) HELIX 1 AA1 GLY A 20 GLY A 33 1 14 HELIX 2 AA2 SER A 39 SER A 49 1 11 HELIX 3 AA3 SER A 51 LYS A 63 1 13 HELIX 4 AA4 PRO A 68 LYS A 83 1 16 HELIX 5 AA5 GLU A 98 ILE A 109 1 12 HELIX 6 AA6 LYS A 121 GLU A 134 1 14 HELIX 7 AA7 ARG A 138 ASP A 141 5 4 HELIX 8 AA8 ASN A 142 THR A 157 1 16 HELIX 9 AA9 THR A 157 GLY A 168 1 12 HELIX 10 AB1 PRO A 178 ALA A 192 1 15 HELIX 11 AB2 GLY B 20 GLY B 33 1 14 HELIX 12 AB3 SER B 39 GLY B 50 1 12 HELIX 13 AB4 SER B 51 LYS B 63 1 13 HELIX 14 AB5 PRO B 68 LYS B 83 1 16 HELIX 15 AB6 GLU B 98 ILE B 109 1 12 HELIX 16 AB7 LYS B 121 GLY B 137 1 17 HELIX 17 AB8 ASN B 142 THR B 157 1 16 HELIX 18 AB9 THR B 157 GLY B 168 1 12 HELIX 19 AC1 PRO B 178 ALA B 192 1 15 SHEET 1 AA1 5 THR A 35 SER A 38 0 SHEET 2 AA1 5 GLY A 89 ASP A 93 1 O ASP A 93 N LEU A 37 SHEET 3 AA1 5 LYS A 9 GLY A 15 1 N ILE A 11 O ILE A 92 SHEET 4 AA1 5 LEU A 114 ASP A 119 1 O LEU A 116 N PHE A 12 SHEET 5 AA1 5 VAL A 170 ASP A 174 1 O ILE A 173 N TYR A 117 SHEET 1 AA2 5 THR B 35 SER B 38 0 SHEET 2 AA2 5 GLY B 89 ASP B 93 1 O ASP B 93 N LEU B 37 SHEET 3 AA2 5 LYS B 9 GLY B 15 1 N ILE B 11 O ILE B 92 SHEET 4 AA2 5 LEU B 114 ASP B 119 1 O LEU B 116 N PHE B 12 SHEET 5 AA2 5 VAL B 170 ASP B 174 1 O ILE B 173 N TYR B 117 CISPEP 1 TYR A 95 PRO A 96 0 1.46 CISPEP 2 TYR B 95 PRO B 96 0 1.83 SITE 1 AC1 32 GLY A 16 PRO A 17 GLY A 18 SER A 19 SITE 2 AC1 32 GLY A 20 LYS A 21 GLY A 22 THR A 23 SITE 3 AC1 32 SER A 39 GLY A 40 LEU A 43 ARG A 44 SITE 4 AC1 32 MET A 61 GLU A 65 VAL A 67 GLY A 94 SITE 5 AC1 32 TYR A 95 ARG A 97 GLN A 101 ARG A 128 SITE 6 AC1 32 LEU A 129 ARG A 132 ARG A 138 ARG A 149 SITE 7 AC1 32 SER A 175 LEU A 177 VAL A 179 HOH A 301 SITE 8 AC1 32 HOH A 305 HOH A 306 HOH A 308 HOH A 320 SITE 1 AC2 5 PRO A 68 LEU A 69 GLU A 98 HOH A 318 SITE 2 AC2 5 HOH A 319 SITE 1 AC3 35 GLY B 16 PRO B 17 GLY B 18 SER B 19 SITE 2 AC3 35 GLY B 20 LYS B 21 GLY B 22 THR B 23 SITE 3 AC3 35 SER B 39 GLY B 40 LEU B 43 ARG B 44 SITE 4 AC3 35 MET B 61 GLU B 65 LEU B 66 VAL B 67 SITE 5 AC3 35 GLY B 94 TYR B 95 ARG B 97 GLN B 101 SITE 6 AC3 35 ARG B 128 ARG B 132 ARG B 138 ARG B 149 SITE 7 AC3 35 SER B 175 LEU B 177 VAL B 179 HOH B 301 SITE 8 AC3 35 HOH B 303 HOH B 308 HOH B 309 HOH B 311 SITE 9 AC3 35 HOH B 312 HOH B 319 HOH B 323 SITE 1 AC4 5 ARG A 53 ASP A 74 ASP A 78 ARG B 138 SITE 2 AC4 5 ALA B 139 CRYST1 105.284 105.284 84.217 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009498 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009498 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011874 0.00000