HEADER TRANSFERASE 07-SEP-17 5YCC TITLE CRYSTAL STRUCTURE OF NOTOTHENIA CORIICEPS ADENYLATE KINASE VARIANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADENYLATE KINASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NOTOTHENIA CORIICEPS; SOURCE 3 ORGANISM_TAXID: 8208; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PHOSPHORYLATION, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR E.BAE,J.KIM,S.MOON REVDAT 3 22-NOV-23 5YCC 1 REMARK REVDAT 2 19-SEP-18 5YCC 1 JRNL REVDAT 1 12-SEP-18 5YCC 0 JRNL AUTH E.BAE,J.KIM,S.MOON JRNL TITL CRYSTAL STRUCTURE OF NOTOTHENIA CORIICEPS ADENYLATE KINASE JRNL TITL 2 VARIANT JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.35 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 13426 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.180 REMARK 3 FREE R VALUE TEST SET COUNT : 695 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.3497 - 4.6041 0.99 2676 148 0.1770 0.2155 REMARK 3 2 4.6041 - 3.6560 1.00 2546 152 0.1418 0.1850 REMARK 3 3 3.6560 - 3.1943 1.00 2534 133 0.1599 0.2416 REMARK 3 4 3.1943 - 2.9025 1.00 2494 145 0.1891 0.2486 REMARK 3 5 2.9025 - 2.6946 0.99 2481 117 0.2121 0.3134 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.270 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3040 REMARK 3 ANGLE : 1.160 4106 REMARK 3 CHIRALITY : 0.040 454 REMARK 3 PLANARITY : 0.005 504 REMARK 3 DIHEDRAL : 14.889 1150 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 20 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 8 THROUGH 20 ) REMARK 3 ORIGIN FOR THE GROUP (A): -31.2303 -6.4300 -18.2351 REMARK 3 T TENSOR REMARK 3 T11: 0.1888 T22: 0.3738 REMARK 3 T33: 0.1909 T12: -0.0890 REMARK 3 T13: 0.0574 T23: -0.0613 REMARK 3 L TENSOR REMARK 3 L11: 7.2361 L22: 6.8028 REMARK 3 L33: 4.6815 L12: -0.4793 REMARK 3 L13: 1.9035 L23: -1.0809 REMARK 3 S TENSOR REMARK 3 S11: 0.3215 S12: -0.1853 S13: 0.4950 REMARK 3 S21: 0.2549 S22: 0.0767 S23: 0.1446 REMARK 3 S31: 0.2184 S32: -0.1630 S33: -0.1632 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 21 THROUGH 34 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.5785 1.8960 -23.0630 REMARK 3 T TENSOR REMARK 3 T11: 0.3954 T22: 0.2568 REMARK 3 T33: 0.4692 T12: -0.0245 REMARK 3 T13: 0.1451 T23: -0.0114 REMARK 3 L TENSOR REMARK 3 L11: 8.9096 L22: 2.6898 REMARK 3 L33: 3.7831 L12: 2.5195 REMARK 3 L13: 0.9276 L23: 1.9363 REMARK 3 S TENSOR REMARK 3 S11: 0.2385 S12: 0.3180 S13: 0.2082 REMARK 3 S21: -0.2015 S22: -0.6646 S23: -0.7237 REMARK 3 S31: -0.6084 S32: 0.1664 S33: 0.2061 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 35 THROUGH 48 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.4042 -12.6107 -25.1230 REMARK 3 T TENSOR REMARK 3 T11: 0.2524 T22: 0.3205 REMARK 3 T33: 0.3122 T12: -0.0140 REMARK 3 T13: 0.0830 T23: 0.0439 REMARK 3 L TENSOR REMARK 3 L11: 4.8416 L22: 9.6549 REMARK 3 L33: 5.9488 L12: -0.3797 REMARK 3 L13: 1.1372 L23: 1.2259 REMARK 3 S TENSOR REMARK 3 S11: 0.5987 S12: 0.6988 S13: 1.1021 REMARK 3 S21: -0.5542 S22: -0.4869 S23: -0.4867 REMARK 3 S31: -0.0998 S32: -0.1576 S33: -0.0091 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 49 THROUGH 68 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.1206 -24.4555 -27.2232 REMARK 3 T TENSOR REMARK 3 T11: 0.3846 T22: 0.4143 REMARK 3 T33: 0.2026 T12: 0.0400 REMARK 3 T13: 0.0445 T23: -0.0313 REMARK 3 L TENSOR REMARK 3 L11: 4.5318 L22: 4.4373 REMARK 3 L33: 5.3328 L12: 0.8082 REMARK 3 L13: -1.2337 L23: -0.7874 REMARK 3 S TENSOR REMARK 3 S11: 0.3599 S12: 0.2879 S13: -0.3858 REMARK 3 S21: -0.4468 S22: -0.1038 S23: 0.0362 REMARK 3 S31: 0.2768 S32: -0.1770 S33: -0.2272 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 69 THROUGH 85 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.7976 -12.8966 -15.1129 REMARK 3 T TENSOR REMARK 3 T11: 0.1756 T22: 0.4345 REMARK 3 T33: 0.3280 T12: -0.0171 REMARK 3 T13: -0.0045 T23: -0.0207 REMARK 3 L TENSOR REMARK 3 L11: 8.2564 L22: 9.0582 REMARK 3 L33: 4.6378 L12: 2.0281 REMARK 3 L13: -0.9972 L23: 0.7978 REMARK 3 S TENSOR REMARK 3 S11: 0.1596 S12: -0.3067 S13: 0.3626 REMARK 3 S21: -0.3241 S22: 0.0102 S23: -1.0840 REMARK 3 S31: -0.3328 S32: 0.4598 S33: -0.1590 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 86 THROUGH 108 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.5437 -11.8286 -12.7823 REMARK 3 T TENSOR REMARK 3 T11: 0.2131 T22: 0.3415 REMARK 3 T33: 0.2411 T12: 0.0226 REMARK 3 T13: 0.0481 T23: -0.0149 REMARK 3 L TENSOR REMARK 3 L11: 7.7676 L22: 5.0820 REMARK 3 L33: 5.5273 L12: -0.9183 REMARK 3 L13: -0.8054 L23: 0.5503 REMARK 3 S TENSOR REMARK 3 S11: 0.0110 S12: -0.0755 S13: 0.2652 REMARK 3 S21: 0.4379 S22: 0.3273 S23: -0.0785 REMARK 3 S31: 0.0899 S32: 0.2987 S33: -0.2327 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 109 THROUGH 121 ) REMARK 3 ORIGIN FOR THE GROUP (A): -34.8979 -6.4160 -15.4219 REMARK 3 T TENSOR REMARK 3 T11: 0.1698 T22: 0.2327 REMARK 3 T33: 0.3124 T12: -0.0431 REMARK 3 T13: 0.0189 T23: -0.0095 REMARK 3 L TENSOR REMARK 3 L11: 4.9935 L22: 4.7046 REMARK 3 L33: 6.3294 L12: -0.9931 REMARK 3 L13: 1.5896 L23: 1.5497 REMARK 3 S TENSOR REMARK 3 S11: 0.0076 S12: -0.9269 S13: 0.2659 REMARK 3 S21: -0.4471 S22: 0.0005 S23: 0.0183 REMARK 3 S31: -0.2448 S32: -0.9759 S33: -0.0490 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 122 THROUGH 156 ) REMARK 3 ORIGIN FOR THE GROUP (A): -36.5619 -16.0283 -32.8241 REMARK 3 T TENSOR REMARK 3 T11: 0.3468 T22: 0.5016 REMARK 3 T33: 0.4166 T12: 0.1170 REMARK 3 T13: -0.0833 T23: -0.0137 REMARK 3 L TENSOR REMARK 3 L11: 5.3090 L22: 7.7427 REMARK 3 L33: 5.7276 L12: -2.0432 REMARK 3 L13: 0.3494 L23: 0.7829 REMARK 3 S TENSOR REMARK 3 S11: 0.3883 S12: 0.8489 S13: -0.5989 REMARK 3 S21: -1.1814 S22: -0.5520 S23: 0.4007 REMARK 3 S31: -0.0218 S32: 0.7829 S33: 0.2425 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 157 THROUGH 178 ) REMARK 3 ORIGIN FOR THE GROUP (A): -39.8078 -7.2839 -15.5412 REMARK 3 T TENSOR REMARK 3 T11: 0.1862 T22: 0.3255 REMARK 3 T33: 0.2465 T12: 0.0295 REMARK 3 T13: 0.0205 T23: -0.0719 REMARK 3 L TENSOR REMARK 3 L11: 2.8887 L22: 6.2406 REMARK 3 L33: 5.4139 L12: -1.4244 REMARK 3 L13: 0.8911 L23: -4.1523 REMARK 3 S TENSOR REMARK 3 S11: 0.2340 S12: -0.1206 S13: -0.0073 REMARK 3 S21: -0.1971 S22: -0.2185 S23: 0.5077 REMARK 3 S31: -0.0242 S32: -0.2049 S33: -0.1029 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 179 THROUGH 193 ) REMARK 3 ORIGIN FOR THE GROUP (A): -35.9503 5.5832 -20.4967 REMARK 3 T TENSOR REMARK 3 T11: 0.3999 T22: 0.3015 REMARK 3 T33: 0.4851 T12: 0.0480 REMARK 3 T13: 0.1383 T23: 0.0137 REMARK 3 L TENSOR REMARK 3 L11: 2.9596 L22: 8.0963 REMARK 3 L33: 5.3665 L12: 0.5711 REMARK 3 L13: -1.0389 L23: 3.5258 REMARK 3 S TENSOR REMARK 3 S11: 0.2541 S12: 0.0680 S13: 0.9942 REMARK 3 S21: 0.0317 S22: -0.3606 S23: -0.4234 REMARK 3 S31: -1.9029 S32: -0.0403 S33: -0.0694 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 8 THROUGH 34 ) REMARK 3 ORIGIN FOR THE GROUP (A): -50.5574 -25.9895 6.8826 REMARK 3 T TENSOR REMARK 3 T11: 0.2959 T22: 0.5134 REMARK 3 T33: 0.4088 T12: -0.0891 REMARK 3 T13: -0.0734 T23: 0.1684 REMARK 3 L TENSOR REMARK 3 L11: 2.4532 L22: 1.5855 REMARK 3 L33: 3.6137 L12: -0.0971 REMARK 3 L13: -0.7825 L23: -1.6308 REMARK 3 S TENSOR REMARK 3 S11: 0.1900 S12: -0.7402 S13: -0.4921 REMARK 3 S21: 0.2242 S22: 0.0205 S23: -0.3849 REMARK 3 S31: -0.2078 S32: -0.0095 S33: -0.1759 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 35 THROUGH 49 ) REMARK 3 ORIGIN FOR THE GROUP (A): -64.4720 -23.4910 1.5450 REMARK 3 T TENSOR REMARK 3 T11: 0.2111 T22: 0.3638 REMARK 3 T33: 0.3111 T12: -0.0541 REMARK 3 T13: 0.0063 T23: 0.0555 REMARK 3 L TENSOR REMARK 3 L11: 4.8932 L22: 2.3895 REMARK 3 L33: 4.0642 L12: 2.3666 REMARK 3 L13: 2.8077 L23: 1.7410 REMARK 3 S TENSOR REMARK 3 S11: 0.3249 S12: -0.7787 S13: 0.6547 REMARK 3 S21: 0.1246 S22: -0.2501 S23: 0.2506 REMARK 3 S31: 0.4232 S32: -0.0215 S33: -0.1488 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 50 THROUGH 68 ) REMARK 3 ORIGIN FOR THE GROUP (A): -67.9034 -22.1014 -9.7187 REMARK 3 T TENSOR REMARK 3 T11: 0.3160 T22: 0.4599 REMARK 3 T33: 0.3648 T12: -0.0645 REMARK 3 T13: -0.1036 T23: 0.1541 REMARK 3 L TENSOR REMARK 3 L11: 8.6371 L22: 5.4991 REMARK 3 L33: 5.8204 L12: 1.1878 REMARK 3 L13: -5.3418 L23: -0.1756 REMARK 3 S TENSOR REMARK 3 S11: -0.3677 S12: 0.9998 S13: 0.4039 REMARK 3 S21: -0.6302 S22: 0.1891 S23: 0.5621 REMARK 3 S31: -0.1004 S32: 0.0825 S33: 0.1990 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 69 THROUGH 82 ) REMARK 3 ORIGIN FOR THE GROUP (A): -62.0006 -13.1938 1.5223 REMARK 3 T TENSOR REMARK 3 T11: 0.2670 T22: 0.4126 REMARK 3 T33: 0.3905 T12: -0.0079 REMARK 3 T13: -0.0319 T23: -0.0124 REMARK 3 L TENSOR REMARK 3 L11: 6.8291 L22: 6.1663 REMARK 3 L33: 3.4751 L12: 0.5614 REMARK 3 L13: -1.1971 L23: 4.2812 REMARK 3 S TENSOR REMARK 3 S11: 0.1408 S12: -0.6638 S13: 0.6574 REMARK 3 S21: 0.0169 S22: -0.1696 S23: 0.3957 REMARK 3 S31: -0.6677 S32: -0.9853 S33: 0.0206 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 83 THROUGH 98 ) REMARK 3 ORIGIN FOR THE GROUP (A): -55.3690 -18.1038 5.9870 REMARK 3 T TENSOR REMARK 3 T11: 0.2504 T22: 0.5482 REMARK 3 T33: 0.3912 T12: -0.1082 REMARK 3 T13: 0.0333 T23: 0.1452 REMARK 3 L TENSOR REMARK 3 L11: 5.1210 L22: 7.5601 REMARK 3 L33: 8.8542 L12: -0.1669 REMARK 3 L13: -1.2709 L23: -0.5903 REMARK 3 S TENSOR REMARK 3 S11: 0.3250 S12: -0.9995 S13: 0.1154 REMARK 3 S21: 0.6937 S22: 0.0996 S23: 0.7119 REMARK 3 S31: 0.0242 S32: 0.3803 S33: -0.3497 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 99 THROUGH 108 ) REMARK 3 ORIGIN FOR THE GROUP (A): -52.6596 -9.4215 -3.7739 REMARK 3 T TENSOR REMARK 3 T11: 0.3608 T22: 0.3329 REMARK 3 T33: 0.4639 T12: 0.0266 REMARK 3 T13: 0.0321 T23: 0.1231 REMARK 3 L TENSOR REMARK 3 L11: 2.3847 L22: 9.0681 REMARK 3 L33: 9.3294 L12: 0.6134 REMARK 3 L13: -3.4250 L23: 5.4081 REMARK 3 S TENSOR REMARK 3 S11: -0.0555 S12: 0.4768 S13: 0.9761 REMARK 3 S21: -0.3015 S22: -0.2800 S23: 1.2420 REMARK 3 S31: -0.8621 S32: -0.3881 S33: 0.2169 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 109 THROUGH 135 ) REMARK 3 ORIGIN FOR THE GROUP (A): -49.5562 -31.0508 -3.4734 REMARK 3 T TENSOR REMARK 3 T11: 0.2435 T22: 0.3123 REMARK 3 T33: 0.2843 T12: 0.0635 REMARK 3 T13: -0.0693 T23: 0.0851 REMARK 3 L TENSOR REMARK 3 L11: 5.3861 L22: 7.4378 REMARK 3 L33: 4.0820 L12: -0.3359 REMARK 3 L13: -0.1267 L23: 2.9476 REMARK 3 S TENSOR REMARK 3 S11: 0.2522 S12: 0.2128 S13: -1.0336 REMARK 3 S21: -0.5811 S22: -0.1989 S23: -0.4207 REMARK 3 S31: 0.3008 S32: -0.0795 S33: -0.1000 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 136 THROUGH 167 ) REMARK 3 ORIGIN FOR THE GROUP (A): -51.6927 -26.0965 -10.1919 REMARK 3 T TENSOR REMARK 3 T11: 0.3211 T22: 0.4732 REMARK 3 T33: 0.2579 T12: 0.0215 REMARK 3 T13: 0.0122 T23: 0.0161 REMARK 3 L TENSOR REMARK 3 L11: 7.5758 L22: 6.4934 REMARK 3 L33: 1.4147 L12: 4.6161 REMARK 3 L13: 0.5882 L23: 0.6254 REMARK 3 S TENSOR REMARK 3 S11: -0.0518 S12: 0.7247 S13: -0.4182 REMARK 3 S21: -0.2519 S22: 0.0249 S23: -0.0970 REMARK 3 S31: 0.1554 S32: -0.1375 S33: 0.0250 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 168 THROUGH 178 ) REMARK 3 ORIGIN FOR THE GROUP (A): -40.5269 -28.7529 0.8941 REMARK 3 T TENSOR REMARK 3 T11: 0.3683 T22: 0.4181 REMARK 3 T33: 0.5518 T12: -0.0079 REMARK 3 T13: -0.0907 T23: 0.1509 REMARK 3 L TENSOR REMARK 3 L11: 0.1565 L22: 2.4002 REMARK 3 L33: 0.9101 L12: 0.3962 REMARK 3 L13: -0.3612 L23: -1.0214 REMARK 3 S TENSOR REMARK 3 S11: 0.0722 S12: -0.4836 S13: -0.4020 REMARK 3 S21: -0.2671 S22: -0.2328 S23: -1.2124 REMARK 3 S31: 0.4551 S32: 0.5463 S33: -0.0009 REMARK 3 TLS GROUP : 20 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 179 THROUGH 193 ) REMARK 3 ORIGIN FOR THE GROUP (A): -41.9523 -29.5735 9.6948 REMARK 3 T TENSOR REMARK 3 T11: 0.3422 T22: 0.5682 REMARK 3 T33: 0.5777 T12: -0.0755 REMARK 3 T13: -0.1726 T23: 0.2485 REMARK 3 L TENSOR REMARK 3 L11: 5.8933 L22: 3.1988 REMARK 3 L33: 9.1876 L12: 0.4600 REMARK 3 L13: 0.1988 L23: 3.4754 REMARK 3 S TENSOR REMARK 3 S11: -0.3292 S12: -0.9337 S13: -0.6731 REMARK 3 S21: 0.3404 S22: 0.1714 S23: -0.2350 REMARK 3 S31: -0.4868 S32: 0.0553 S33: 0.0509 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5YCC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-SEP-17. REMARK 100 THE DEPOSITION ID IS D_1300004941. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JUL-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 7A (6B, 6C1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97933 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13506 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 16.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 16.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 5X6K REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.14M LITHIUM SULFATE, 45% PEG400, REMARK 280 0.1M ACETATE PH4.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.88950 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 52.60000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 52.60000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 20.94475 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 52.60000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 52.60000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 62.83425 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 52.60000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 52.60000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 20.94475 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 52.60000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 52.60000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 62.83425 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 41.88950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1400 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ASP A 3 REMARK 465 LYS A 4 REMARK 465 ILE A 5 REMARK 465 LYS A 6 REMARK 465 ASP A 7 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 ASP B 3 REMARK 465 LYS B 4 REMARK 465 ILE B 5 REMARK 465 LYS B 6 REMARK 465 ASP B 7 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 109 -72.59 -125.24 REMARK 500 THR A 135 -61.09 -104.09 REMARK 500 ILE B 109 -82.62 -129.77 REMARK 500 THR B 135 -63.36 -94.17 REMARK 500 SER B 136 95.38 -170.58 REMARK 500 ASP B 141 43.12 -91.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AP5 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AP5 B 201 DBREF 5YCC A 1 193 PDB 5YCC 5YCC 1 193 DBREF 5YCC B 1 193 PDB 5YCC 5YCC 1 193 SEQRES 1 A 193 MET ALA ASP LYS ILE LYS ASP ALA LYS ILE ILE PHE VAL SEQRES 2 A 193 VAL GLY GLY PRO GLY SER GLY LYS GLY THR GLN CYS GLU SEQRES 3 A 193 LYS VAL VAL ALA LYS TYR GLY TYR THR HIS LEU SER SER SEQRES 4 A 193 GLY ASP LEU LEU ARG ALA GLU VAL SER SER GLY SER GLU SEQRES 5 A 193 ARG GLY LYS GLN LEU GLN ALA ILE MET GLN LYS GLY GLU SEQRES 6 A 193 LEU VAL PRO LEU ASP THR VAL LEU ASP MET ILE LYS ASP SEQRES 7 A 193 ALA MET ILE ALA LYS ALA ASP VAL SER LYS GLY TYR LEU SEQRES 8 A 193 ILE ASP GLY TYR PRO ARG GLU VAL LYS GLN GLY GLU GLU SEQRES 9 A 193 PHE GLU LYS LYS ILE GLY LYS PRO CYS LEU LEU LEU TYR SEQRES 10 A 193 ILE ASP ALA LYS GLY GLU THR MET VAL LYS ARG LEU MET SEQRES 11 A 193 LYS ARG GLY GLU THR SER GLY ARG ALA ASP ASP ASN GLU SEQRES 12 A 193 GLU THR ILE LYS LYS ARG LEU ASP LEU TYR TYR LYS ALA SEQRES 13 A 193 THR GLU PRO VAL ILE ALA PHE TYR GLU GLY ARG GLY ILE SEQRES 14 A 193 VAL ARG LYS VAL ASP SER GLU LEU PRO VAL ASP GLU VAL SEQRES 15 A 193 PHE LYS GLN VAL SER THR ALA ILE ASP ALA LEU SEQRES 1 B 193 MET ALA ASP LYS ILE LYS ASP ALA LYS ILE ILE PHE VAL SEQRES 2 B 193 VAL GLY GLY PRO GLY SER GLY LYS GLY THR GLN CYS GLU SEQRES 3 B 193 LYS VAL VAL ALA LYS TYR GLY TYR THR HIS LEU SER SER SEQRES 4 B 193 GLY ASP LEU LEU ARG ALA GLU VAL SER SER GLY SER GLU SEQRES 5 B 193 ARG GLY LYS GLN LEU GLN ALA ILE MET GLN LYS GLY GLU SEQRES 6 B 193 LEU VAL PRO LEU ASP THR VAL LEU ASP MET ILE LYS ASP SEQRES 7 B 193 ALA MET ILE ALA LYS ALA ASP VAL SER LYS GLY TYR LEU SEQRES 8 B 193 ILE ASP GLY TYR PRO ARG GLU VAL LYS GLN GLY GLU GLU SEQRES 9 B 193 PHE GLU LYS LYS ILE GLY LYS PRO CYS LEU LEU LEU TYR SEQRES 10 B 193 ILE ASP ALA LYS GLY GLU THR MET VAL LYS ARG LEU MET SEQRES 11 B 193 LYS ARG GLY GLU THR SER GLY ARG ALA ASP ASP ASN GLU SEQRES 12 B 193 GLU THR ILE LYS LYS ARG LEU ASP LEU TYR TYR LYS ALA SEQRES 13 B 193 THR GLU PRO VAL ILE ALA PHE TYR GLU GLY ARG GLY ILE SEQRES 14 B 193 VAL ARG LYS VAL ASP SER GLU LEU PRO VAL ASP GLU VAL SEQRES 15 B 193 PHE LYS GLN VAL SER THR ALA ILE ASP ALA LEU HET AP5 A 201 57 HET SO4 A 202 5 HET SO4 A 203 5 HET AP5 B 201 57 HETNAM AP5 BIS(ADENOSINE)-5'-PENTAPHOSPHATE HETNAM SO4 SULFATE ION FORMUL 3 AP5 2(C20 H29 N10 O22 P5) FORMUL 4 SO4 2(O4 S 2-) FORMUL 7 HOH *28(H2 O) HELIX 1 AA1 GLY A 20 GLY A 33 1 14 HELIX 2 AA2 SER A 39 SER A 49 1 11 HELIX 3 AA3 SER A 51 LYS A 63 1 13 HELIX 4 AA4 PRO A 68 LYS A 83 1 16 HELIX 5 AA5 ALA A 84 VAL A 86 5 3 HELIX 6 AA6 GLU A 98 ILE A 109 1 12 HELIX 7 AA7 LYS A 121 GLY A 137 1 17 HELIX 8 AA8 ARG A 138 ASP A 141 5 4 HELIX 9 AA9 ASN A 142 THR A 157 1 16 HELIX 10 AB1 THR A 157 GLY A 168 1 12 HELIX 11 AB2 PRO A 178 ALA A 192 1 15 HELIX 12 AB3 GLY B 20 GLY B 33 1 14 HELIX 13 AB4 SER B 39 GLY B 50 1 12 HELIX 14 AB5 SER B 51 LYS B 63 1 13 HELIX 15 AB6 PRO B 68 LYS B 83 1 16 HELIX 16 AB7 GLU B 98 ILE B 109 1 12 HELIX 17 AB8 LYS B 121 SER B 136 1 16 HELIX 18 AB9 ASN B 142 ALA B 156 1 15 HELIX 19 AC1 ALA B 156 GLY B 168 1 13 HELIX 20 AC2 PRO B 178 LEU B 193 1 16 SHEET 1 AA1 5 THR A 35 SER A 38 0 SHEET 2 AA1 5 GLY A 89 ASP A 93 1 O ASP A 93 N LEU A 37 SHEET 3 AA1 5 LYS A 9 GLY A 15 1 N ILE A 11 O ILE A 92 SHEET 4 AA1 5 LEU A 114 ASP A 119 1 O LEU A 116 N PHE A 12 SHEET 5 AA1 5 VAL A 170 ASP A 174 1 O ARG A 171 N TYR A 117 SHEET 1 AA2 5 THR B 35 SER B 38 0 SHEET 2 AA2 5 GLY B 89 ASP B 93 1 O GLY B 89 N THR B 35 SHEET 3 AA2 5 LYS B 9 GLY B 15 1 N LYS B 9 O TYR B 90 SHEET 4 AA2 5 LEU B 114 ASP B 119 1 O ILE B 118 N VAL B 14 SHEET 5 AA2 5 VAL B 170 ASP B 174 1 O VAL B 173 N TYR B 117 CISPEP 1 TYR A 95 PRO A 96 0 5.61 CISPEP 2 TYR B 95 PRO B 96 0 -4.39 SITE 1 AC1 27 GLY A 16 PRO A 17 GLY A 18 SER A 19 SITE 2 AC1 27 GLY A 20 LYS A 21 GLY A 22 THR A 23 SITE 3 AC1 27 SER A 39 GLY A 40 LEU A 43 ARG A 44 SITE 4 AC1 27 MET A 61 GLU A 65 LEU A 66 VAL A 67 SITE 5 AC1 27 GLY A 94 TYR A 95 ARG A 97 GLN A 101 SITE 6 AC1 27 ARG A 128 ARG A 132 ARG A 138 ARG A 149 SITE 7 AC1 27 LEU A 177 VAL A 179 HOH A 301 SITE 1 AC2 5 ARG A 53 ASP A 74 ASP A 78 ARG B 138 SITE 2 AC2 5 ALA B 139 SITE 1 AC3 4 PRO A 68 LEU A 69 GLU A 98 HOH A 307 SITE 1 AC4 27 PRO B 17 GLY B 18 SER B 19 GLY B 20 SITE 2 AC4 27 LYS B 21 GLY B 22 THR B 23 SER B 39 SITE 3 AC4 27 GLY B 40 LEU B 43 ARG B 44 MET B 61 SITE 4 AC4 27 GLU B 65 LEU B 66 VAL B 67 GLY B 94 SITE 5 AC4 27 TYR B 95 ARG B 97 GLN B 101 ARG B 128 SITE 6 AC4 27 ARG B 132 ARG B 138 ARG B 149 SER B 175 SITE 7 AC4 27 LEU B 177 VAL B 179 HOH B 304 CRYST1 105.200 105.200 83.779 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009506 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009506 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011936 0.00000