HEADER TRANSFERASE 13-SEP-17 5YDM TITLE THE CRYSTAL STRUCTURE OF THE ACYL TRANSFERASE DOMAIN OF SPND COMPLEX TITLE 2 WITH BENZYLMALONYL COMPND MOL_ID: 1; COMPND 2 MOLECULE: PKS; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ACYL TRANSFERASE DOMAIN, UNP RESIDUES 457-861; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES SP. CNQ431; SOURCE 3 ORGANISM_TAXID: 1571532; SOURCE 4 GENE: SPND; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21-GOLD(DE3)PLYSS AG KEYWDS PKS, ACYL TRANSFERASE DOMAIN, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.LI,X.D.QU,J.H.ZHOU REVDAT 1 23-MAY-18 5YDM 0 JRNL AUTH Y.LI,W.ZHANG,H.ZHANG,W.Y.TIAN,L.WU,S.W.WANG,M.M.ZHENG, JRNL AUTH 2 J.R.ZHANG,C.H.SUN,Z.X.DENG,Y.H.SUN,X.D.QU,J.H.ZHOU JRNL TITL STRUCTURAL BASIS OF A BROADLY SELECTIVE ACYLTRANSFERASE FROM JRNL TITL 2 THE POLYKETIDE SYNTHASE OF SPLENOCIN. JRNL REF ANGEW. CHEM. INT. ED. ENGL. V. 57 5823 2018 JRNL REFN ESSN 1521-3773 JRNL PMID 29536601 JRNL DOI 10.1002/ANIE.201802805 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.71 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 30565 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.760 REMARK 3 FREE R VALUE TEST SET COUNT : 1454 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.7229 - 5.3819 1.00 3148 170 0.2031 0.2171 REMARK 3 2 5.3819 - 4.2725 1.00 2978 158 0.1715 0.1975 REMARK 3 3 4.2725 - 3.7327 1.00 2979 115 0.1772 0.1772 REMARK 3 4 3.7327 - 3.3915 1.00 2936 152 0.1961 0.2394 REMARK 3 5 3.3915 - 3.1485 1.00 2913 130 0.2087 0.2266 REMARK 3 6 3.1485 - 2.9629 1.00 2914 145 0.2170 0.2569 REMARK 3 7 2.9629 - 2.8145 1.00 2902 148 0.2175 0.1973 REMARK 3 8 2.8145 - 2.6920 1.00 2880 148 0.2178 0.2465 REMARK 3 9 2.6920 - 2.5884 0.99 2851 153 0.2201 0.2686 REMARK 3 10 2.5884 - 2.4990 0.90 2610 135 0.2332 0.2763 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.090 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 3118 REMARK 3 ANGLE : 1.142 4250 REMARK 3 CHIRALITY : 0.058 494 REMARK 3 PLANARITY : 0.006 564 REMARK 3 DIHEDRAL : 19.733 1881 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5YDM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-SEP-17. REMARK 100 THE DEPOSITION ID IS D_1300005092. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-MAR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97853 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30565 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 25.70 REMARK 200 R MERGE (I) : 0.13200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.70900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHENIX 1.10.1_2155 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 73.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.5M LITHIUM SULFATE MONOHYDRATE A, REMARK 280 0.1M BIS-TRIS PROPANE PH 6.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+1/4 REMARK 290 8555 -Y,-X,-Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 72.41900 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 108.62850 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 36.20950 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 72.41900 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 36.20950 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 108.62850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 722 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -26 REMARK 465 GLY A -25 REMARK 465 SER A -24 REMARK 465 HIS A -23 REMARK 465 HIS A -22 REMARK 465 HIS A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 GLY A -15 REMARK 465 SER A -14 REMARK 465 ASP A -13 REMARK 465 TYR A -12 REMARK 465 ASP A -11 REMARK 465 ILE A -10 REMARK 465 PRO A -9 REMARK 465 THR A -8 REMARK 465 THR A -7 REMARK 465 GLU A -6 REMARK 465 VAL A 403 REMARK 465 PRO A 404 REMARK 465 ARG A 405 REMARK 465 PRO A 406 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 255 CG2 REMARK 470 THR A 300 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 173 O13 DUW A 501 2.04 REMARK 500 O HOH A 686 O HOH A 719 2.08 REMARK 500 OE1 GLU A 253 NH1 ARG A 257 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OG SER A 281 OG SER A 281 6564 1.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MET A 266 C PRO A 267 N 0.138 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ALA A 374 CB - CA - C ANGL. DEV. = -9.3 DEGREES REMARK 500 ALA A 374 N - CA - C ANGL. DEV. = -25.3 DEGREES REMARK 500 LYS A 375 N - CA - CB ANGL. DEV. = 23.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 31 74.07 -154.15 REMARK 500 ASP A 37 -68.76 -14.91 REMARK 500 GLU A 135 -64.59 -122.36 REMARK 500 SER A 173 -112.23 59.24 REMARK 500 ALA A 269 55.45 -141.58 REMARK 500 ASP A 350 32.15 -140.60 REMARK 500 LYS A 375 -45.26 108.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DUW A 501 DBREF1 5YDM A 2 406 UNP A0A0E3JLZ0_9ACTN DBREF2 5YDM A A0A0E3JLZ0 457 861 SEQADV 5YDM MET A -26 UNP A0A0E3JLZ EXPRESSION TAG SEQADV 5YDM GLY A -25 UNP A0A0E3JLZ EXPRESSION TAG SEQADV 5YDM SER A -24 UNP A0A0E3JLZ EXPRESSION TAG SEQADV 5YDM HIS A -23 UNP A0A0E3JLZ EXPRESSION TAG SEQADV 5YDM HIS A -22 UNP A0A0E3JLZ EXPRESSION TAG SEQADV 5YDM HIS A -21 UNP A0A0E3JLZ EXPRESSION TAG SEQADV 5YDM HIS A -20 UNP A0A0E3JLZ EXPRESSION TAG SEQADV 5YDM HIS A -19 UNP A0A0E3JLZ EXPRESSION TAG SEQADV 5YDM HIS A -18 UNP A0A0E3JLZ EXPRESSION TAG SEQADV 5YDM HIS A -17 UNP A0A0E3JLZ EXPRESSION TAG SEQADV 5YDM HIS A -16 UNP A0A0E3JLZ EXPRESSION TAG SEQADV 5YDM GLY A -15 UNP A0A0E3JLZ EXPRESSION TAG SEQADV 5YDM SER A -14 UNP A0A0E3JLZ EXPRESSION TAG SEQADV 5YDM ASP A -13 UNP A0A0E3JLZ EXPRESSION TAG SEQADV 5YDM TYR A -12 UNP A0A0E3JLZ EXPRESSION TAG SEQADV 5YDM ASP A -11 UNP A0A0E3JLZ EXPRESSION TAG SEQADV 5YDM ILE A -10 UNP A0A0E3JLZ EXPRESSION TAG SEQADV 5YDM PRO A -9 UNP A0A0E3JLZ EXPRESSION TAG SEQADV 5YDM THR A -8 UNP A0A0E3JLZ EXPRESSION TAG SEQADV 5YDM THR A -7 UNP A0A0E3JLZ EXPRESSION TAG SEQADV 5YDM GLU A -6 UNP A0A0E3JLZ EXPRESSION TAG SEQADV 5YDM ASN A -5 UNP A0A0E3JLZ EXPRESSION TAG SEQADV 5YDM LEU A -4 UNP A0A0E3JLZ EXPRESSION TAG SEQADV 5YDM TYR A -3 UNP A0A0E3JLZ EXPRESSION TAG SEQADV 5YDM PHE A -2 UNP A0A0E3JLZ EXPRESSION TAG SEQADV 5YDM GLN A -1 UNP A0A0E3JLZ EXPRESSION TAG SEQADV 5YDM GLY A 0 UNP A0A0E3JLZ EXPRESSION TAG SEQADV 5YDM SER A 1 UNP A0A0E3JLZ EXPRESSION TAG SEQRES 1 A 433 MET GLY SER HIS HIS HIS HIS HIS HIS HIS HIS GLY SER SEQRES 2 A 433 ASP TYR ASP ILE PRO THR THR GLU ASN LEU TYR PHE GLN SEQRES 3 A 433 GLY SER GLY ARG ARG LEU VAL LEU PRO VAL SER ALA ARG SEQRES 4 A 433 THR SER GLY ALA LEU ARG GLY GLN ALA HIS ALA LEU ALA SEQRES 5 A 433 ARG ARG LEU GLU GLU ARG PRO GLY LEU ARG LEU ASP ASP SEQRES 6 A 433 VAL ALA GLY ALA LEU ARG ALA ASP ARG PRO ALA LEU ARG SEQRES 7 A 433 HIS ARG LEU THR VAL SER ALA SER SER VAL PRO GLU ALA SEQRES 8 A 433 VAL GLU ALA LEU ARG ALA ALA VAL PRO ALA VAL PRO PRO SEQRES 9 A 433 VAL PRO ASP GLU PRO PRO LYS VAL ALA PHE LEU LEU PRO SEQRES 10 A 433 GLY GLY GLY THR GLN TYR VAL GLY MET GLY SER GLY LEU SEQRES 11 A 433 TYR ARG GLU ASN ASP VAL TYR ARG ASP THR VAL ASP ARG SEQRES 12 A 433 CYS ALA ALA VAL LEU ARG PRO ALA LEU GLY SER ASP LEU SEQRES 13 A 433 ARG THR ALA LEU PHE GLU GLU VAL GLU PRO GLY SER THR SEQRES 14 A 433 ALA ALA PHE MET ALA LEU PHE VAL THR GLU TYR ALA LEU SEQRES 15 A 433 ALA ARG THR LEU MET GLU GLU GLY VAL ARG PRO ASP ALA SEQRES 16 A 433 LEU ILE GLY HIS SER LEU GLY GLU TYR THR ALA ALA CYS SEQRES 17 A 433 LEU ALA GLY VAL MET GLU ILE ASP GLU ALA LEU PRO VAL SEQRES 18 A 433 VAL ALA GLU ARG ILE ARG LEU ILE ALA SER SER GLY GLY SEQRES 19 A 433 ALA THR VAL GLY VAL ALA ALA CYS ALA ASP THR VAL LEU SEQRES 20 A 433 PRO LEU LEU GLY GLU GLY LEU SER LEU ALA ALA VAL ASN SEQRES 21 A 433 SER PRO VAL ALA CYS THR VAL ALA GLY ASP THR ASP ALA SEQRES 22 A 433 VAL ASP ARG LEU GLU ALA GLU LEU THR ARG ARG GLY VAL SEQRES 23 A 433 PRO PHE ARG ARG LEU ARG MET PRO ALA ALA ALA HIS SER SEQRES 24 A 433 HIS VAL LEU ASP PRO ILE LEU GLU SER PHE ALA GLY HIS SEQRES 25 A 433 LEU ARG THR LEU THR LEU ARG PRO PRO ARG ILE PRO TYR SEQRES 26 A 433 VAL THR ASN VAL THR GLY ASP TRP ALA THR ASP ALA GLN SEQRES 27 A 433 ALA THR ASP VAL GLY HIS TRP VAL ASP HIS THR ARG ARG SEQRES 28 A 433 THR VAL ARG PHE ALA ASP GLY ILE ALA ALA LEU TRP GLU SEQRES 29 A 433 ARG GLU ARG PRO VAL LEU VAL GLU ILE GLY PRO GLY ASP SEQRES 30 A 433 SER LEU THR LYS LEU ALA ARG ALA ARG LEU ASP GLY GLU SEQRES 31 A 433 GLY PRO VAL THR VAL THR THR MET ARG HIS ALA LYS ALA SEQRES 32 A 433 GLN ALA ALA ASP GLY PHE VAL LEU ALA GLU ALA LEU GLY SEQRES 33 A 433 ARG LEU TRP SER ALA GLY VAL ASP ALA ALA LEU PRO HIS SEQRES 34 A 433 VAL PRO ARG PRO HET DUW A 501 13 HETNAM DUW (2R)-2-METHANOYL-3-PHENYL-PROPANOIC ACID FORMUL 2 DUW C10 H10 O3 FORMUL 3 HOH *131(H2 O) HELIX 1 AA1 GLY A 15 GLU A 30 1 16 HELIX 2 AA2 ARG A 35 ASP A 46 1 12 HELIX 3 AA3 SER A 60 ALA A 71 1 12 HELIX 4 AA4 GLY A 100 ASN A 107 1 8 HELIX 5 AA5 ASN A 107 GLY A 126 1 20 HELIX 6 AA6 ASP A 128 GLU A 135 1 8 HELIX 7 AA7 SER A 141 GLU A 162 1 22 HELIX 8 AA8 LEU A 174 ALA A 183 1 10 HELIX 9 AA9 GLU A 187 SER A 204 1 18 HELIX 10 AB1 CYS A 215 LEU A 220 1 6 HELIX 11 AB2 PRO A 221 LEU A 223 5 3 HELIX 12 AB3 ASP A 243 ARG A 257 1 15 HELIX 13 AB4 SER A 272 PRO A 277 5 6 HELIX 14 AB5 ILE A 278 ARG A 287 1 10 HELIX 15 AB6 THR A 308 THR A 313 1 6 HELIX 16 AB7 ASP A 314 ARG A 324 1 11 HELIX 17 AB8 ARG A 327 ARG A 340 1 14 HELIX 18 AB9 ASP A 350 LEU A 360 1 11 HELIX 19 AC1 ALA A 379 ALA A 394 1 16 HELIX 20 AC2 VAL A 396 LEU A 400 5 5 SHEET 1 AA1 2 LEU A 5 ALA A 11 0 SHEET 2 AA1 2 HIS A 52 ALA A 58 -1 O ALA A 58 N LEU A 5 SHEET 1 AA2 6 ASP A 305 TRP A 306 0 SHEET 2 AA2 6 TYR A 298 THR A 300 -1 N THR A 300 O ASP A 305 SHEET 3 AA2 6 ALA A 168 GLY A 171 1 N LEU A 169 O VAL A 299 SHEET 4 AA2 6 VAL A 85 LEU A 89 1 N LEU A 89 O ILE A 170 SHEET 5 AA2 6 VAL A 342 GLU A 345 1 O VAL A 344 N LEU A 88 SHEET 6 AA2 6 THR A 367 VAL A 368 1 O VAL A 368 N LEU A 343 SHEET 1 AA3 4 LEU A 227 SER A 234 0 SHEET 2 AA3 4 ALA A 237 GLY A 242 -1 O ALA A 241 N SER A 228 SHEET 3 AA3 4 ALA A 208 VAL A 212 -1 N VAL A 212 O CYS A 238 SHEET 4 AA3 4 PHE A 261 ARG A 263 -1 O ARG A 262 N GLY A 211 LINK OG SER A 173 C12 DUW A 501 1555 1555 1.38 CISPEP 1 SER A 14 GLY A 15 0 -15.51 CISPEP 2 LEU A 223 GLY A 224 0 -1.84 CISPEP 3 ASP A 361 GLY A 362 0 -1.64 SITE 1 AC1 9 GLY A 91 GLY A 92 SER A 173 LEU A 174 SITE 2 AC1 9 ARG A 198 ILE A 202 MET A 266 ALA A 268 SITE 3 AC1 9 HIS A 271 CRYST1 108.927 108.927 144.838 90.00 90.00 90.00 P 43 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009180 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009180 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006904 0.00000