HEADER GENE REGULATION 14-SEP-17 5YDP TITLE CRYSTAL STRUCTURE OF TETR FAMILY REPRESSOR ALKX FROM DIETZIA SP. TITLE 2 STRAIN DQ12-45-1B IMPLICATED IN BIODEGRADATION OF N-ALKANES COMPND MOL_ID: 1; COMPND 2 MOLECULE: TETR TRANSCRIPTIONAL REGULATORY PROTEIN; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: ALKX; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DIETZIA SP. DQ12-45-1B; SOURCE 3 ORGANISM_TAXID: 912801; SOURCE 4 GENE: ALKWR; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS 10 ALFA HELICES, HOMODIMER, APO-PROTEIN, GENE REGULATION EXPDTA X-RAY DIFFRACTION AUTHOR H.ZHENG,Y.GAO,J.L.LIANG REVDAT 4 18-APR-18 5YDP 1 JRNL REVDAT 3 07-MAR-18 5YDP 1 JRNL REVDAT 2 01-NOV-17 5YDP 1 JRNL REVDAT 1 04-OCT-17 5YDP 0 JRNL AUTH J.L.LIANG,Y.GAO,Z.HE,Y.NIE,M.WANG,J.H.JIANGYANG,X.C.ZHANG, JRNL AUTH 2 W.S.SHU,X.L.WU JRNL TITL CRYSTAL STRUCTURE OF TETR FAMILY REPRESSOR ALKX FROM DIETZIA JRNL TITL 2 SP. STRAIN DQ12-45-1B IMPLICATED IN BIODEGRADATION JRNL TITL 3 OFN-ALKANES. JRNL REF APPL. ENVIRON. MICROBIOL. V. 83 2017 JRNL REFN ESSN 1098-5336 JRNL PMID 28821550 JRNL DOI 10.1128/AEM.01447-17 REMARK 2 REMARK 2 RESOLUTION. 3.09 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : MLHL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.09 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.15 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.940 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 18390 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.247 REMARK 3 R VALUE (WORKING SET) : 0.245 REMARK 3 FREE R VALUE : 0.283 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 918 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.1536 - 5.9043 0.98 2553 133 0.2054 0.2259 REMARK 3 2 5.9043 - 4.6903 0.99 2522 136 0.2465 0.2812 REMARK 3 3 4.6903 - 4.0985 0.99 2536 132 0.2170 0.2629 REMARK 3 4 4.0985 - 3.7243 0.99 2510 132 0.2244 0.2536 REMARK 3 5 3.7243 - 3.4576 0.98 2501 134 0.2699 0.3043 REMARK 3 6 3.4576 - 3.2539 0.97 2458 121 0.2928 0.3827 REMARK 3 7 3.2539 - 3.0911 0.94 2392 130 0.3144 0.3350 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.400 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.640 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 32.74 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 4252 REMARK 3 ANGLE : 1.491 5763 REMARK 3 CHIRALITY : 0.068 678 REMARK 3 PLANARITY : 0.009 740 REMARK 3 DIHEDRAL : 6.740 3279 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESID 31 THROUGH 125 OR REMARK 3 RESID 135 THROUGH 156 OR RESID 158 REMARK 3 THROUGH 214)) REMARK 3 SELECTION : (CHAIN B AND (RESID 31 THROUGH 125 OR REMARK 3 RESID 135 THROUGH 156 OR RESID 158 REMARK 3 THROUGH 214)) REMARK 3 ATOM PAIRS NUMBER : 2324 REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESID 31 THROUGH 125 OR REMARK 3 RESID 135 THROUGH 156 OR RESID 158 REMARK 3 THROUGH 214)) REMARK 3 SELECTION : (CHAIN C AND (RESID 31 THROUGH 156 OR REMARK 3 RESID 158 THROUGH 214)) REMARK 3 ATOM PAIRS NUMBER : 2324 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5YDP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-SEP-17. REMARK 100 THE DEPOSITION ID IS D_1300005098. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-MAY-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979622 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18667 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.09300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : 0.48200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.01M MAGNESIUM ACETATE, 0.05M SODIUM REMARK 280 CACODYLATE, 1.3M LITHIUM SULFATE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 54.83100 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 89.85550 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 54.83100 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 89.85550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2750 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17330 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 109.66200 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MSE A 1 REMARK 465 ARG A 2 REMARK 465 SER A 3 REMARK 465 GLY A 4 REMARK 465 THR A 5 REMARK 465 MSE A 6 REMARK 465 ASP A 7 REMARK 465 ARG A 8 REMARK 465 MSE A 9 REMARK 465 PRO A 10 REMARK 465 PRO A 11 REMARK 465 ARG A 12 REMARK 465 PRO A 13 REMARK 465 SER A 14 REMARK 465 THR A 15 REMARK 465 ARG A 16 REMARK 465 ASP A 17 REMARK 465 GLN A 18 REMARK 465 ARG A 19 REMARK 465 SER A 20 REMARK 465 SER A 21 REMARK 465 GLY A 22 REMARK 465 ASP A 23 REMARK 465 SER A 24 REMARK 465 ARG A 25 REMARK 465 THR A 130 REMARK 465 GLY A 131 REMARK 465 ASP A 132 REMARK 465 ILE A 133 REMARK 465 LYS A 134 REMARK 465 VAL A 215 REMARK 465 ASP A 216 REMARK 465 VAL A 217 REMARK 465 GLN A 218 REMARK 465 GLN A 219 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 LEU B -6 REMARK 465 VAL B -5 REMARK 465 PRO B -4 REMARK 465 ARG B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MSE B 1 REMARK 465 ARG B 2 REMARK 465 SER B 3 REMARK 465 GLY B 4 REMARK 465 THR B 5 REMARK 465 MSE B 6 REMARK 465 ASP B 7 REMARK 465 ARG B 8 REMARK 465 MSE B 9 REMARK 465 PRO B 10 REMARK 465 PRO B 11 REMARK 465 ARG B 12 REMARK 465 PRO B 13 REMARK 465 SER B 14 REMARK 465 THR B 15 REMARK 465 ARG B 16 REMARK 465 ASP B 17 REMARK 465 GLN B 18 REMARK 465 ARG B 19 REMARK 465 SER B 20 REMARK 465 SER B 21 REMARK 465 GLY B 22 REMARK 465 ASP B 23 REMARK 465 SER B 24 REMARK 465 ARG B 25 REMARK 465 GLY B 26 REMARK 465 GLY B 27 REMARK 465 ARG B 28 REMARK 465 TRP B 29 REMARK 465 SER B 30 REMARK 465 ASP B 132 REMARK 465 ILE B 133 REMARK 465 LYS B 134 REMARK 465 VAL B 215 REMARK 465 ASP B 216 REMARK 465 VAL B 217 REMARK 465 GLN B 218 REMARK 465 GLN B 219 REMARK 465 HIS C -15 REMARK 465 HIS C -14 REMARK 465 HIS C -13 REMARK 465 HIS C -12 REMARK 465 HIS C -11 REMARK 465 HIS C -10 REMARK 465 SER C -9 REMARK 465 SER C -8 REMARK 465 GLY C -7 REMARK 465 LEU C -6 REMARK 465 VAL C -5 REMARK 465 PRO C -4 REMARK 465 ARG C -3 REMARK 465 GLY C -2 REMARK 465 SER C -1 REMARK 465 HIS C 0 REMARK 465 MSE C 1 REMARK 465 ARG C 2 REMARK 465 SER C 3 REMARK 465 GLY C 4 REMARK 465 THR C 5 REMARK 465 MSE C 6 REMARK 465 ASP C 7 REMARK 465 ARG C 8 REMARK 465 MSE C 9 REMARK 465 PRO C 10 REMARK 465 PRO C 11 REMARK 465 ARG C 12 REMARK 465 PRO C 13 REMARK 465 SER C 14 REMARK 465 THR C 15 REMARK 465 ARG C 16 REMARK 465 ASP C 17 REMARK 465 GLN C 18 REMARK 465 ARG C 19 REMARK 465 SER C 20 REMARK 465 SER C 21 REMARK 465 GLY C 22 REMARK 465 ASP C 23 REMARK 465 SER C 24 REMARK 465 ARG C 25 REMARK 465 GLY C 26 REMARK 465 GLY C 27 REMARK 465 ARG C 28 REMARK 465 TRP C 29 REMARK 465 SER C 30 REMARK 465 ARG C 126 REMARK 465 ALA C 127 REMARK 465 LEU C 128 REMARK 465 VAL C 129 REMARK 465 THR C 130 REMARK 465 GLY C 131 REMARK 465 ASP C 132 REMARK 465 ILE C 133 REMARK 465 LYS C 134 REMARK 465 GLN C 218 REMARK 465 GLN C 219 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG B 99 OE2 GLU B 110 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 140 CA - CB - CG ANGL. DEV. = 14.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 28 40.87 -102.10 REMARK 500 HIS A 100 79.68 -119.11 REMARK 500 VAL A 213 22.49 -68.85 REMARK 500 THR B 130 -50.13 -140.25 REMARK 500 SER B 163 -169.51 -76.99 REMARK 500 SER B 188 -71.37 -56.97 REMARK 500 GLU C 144 33.25 -98.38 REMARK 500 SER C 163 -167.16 -76.62 REMARK 500 SER C 188 -75.90 -57.58 REMARK 500 REMARK 500 REMARK: NULL DBREF 5YDP A 6 219 UNP G3EIL4 G3EIL4_9ACTN 1 214 DBREF 5YDP B 6 219 UNP G3EIL4 G3EIL4_9ACTN 1 214 DBREF 5YDP C 6 219 UNP G3EIL4 G3EIL4_9ACTN 1 214 SEQADV 5YDP HIS A -15 UNP G3EIL4 EXPRESSION TAG SEQADV 5YDP HIS A -14 UNP G3EIL4 EXPRESSION TAG SEQADV 5YDP HIS A -13 UNP G3EIL4 EXPRESSION TAG SEQADV 5YDP HIS A -12 UNP G3EIL4 EXPRESSION TAG SEQADV 5YDP HIS A -11 UNP G3EIL4 EXPRESSION TAG SEQADV 5YDP HIS A -10 UNP G3EIL4 EXPRESSION TAG SEQADV 5YDP SER A -9 UNP G3EIL4 EXPRESSION TAG SEQADV 5YDP SER A -8 UNP G3EIL4 EXPRESSION TAG SEQADV 5YDP GLY A -7 UNP G3EIL4 EXPRESSION TAG SEQADV 5YDP LEU A -6 UNP G3EIL4 EXPRESSION TAG SEQADV 5YDP VAL A -5 UNP G3EIL4 EXPRESSION TAG SEQADV 5YDP PRO A -4 UNP G3EIL4 EXPRESSION TAG SEQADV 5YDP ARG A -3 UNP G3EIL4 EXPRESSION TAG SEQADV 5YDP GLY A -2 UNP G3EIL4 EXPRESSION TAG SEQADV 5YDP SER A -1 UNP G3EIL4 EXPRESSION TAG SEQADV 5YDP HIS A 0 UNP G3EIL4 EXPRESSION TAG SEQADV 5YDP MSE A 1 UNP G3EIL4 EXPRESSION TAG SEQADV 5YDP ARG A 2 UNP G3EIL4 EXPRESSION TAG SEQADV 5YDP SER A 3 UNP G3EIL4 EXPRESSION TAG SEQADV 5YDP GLY A 4 UNP G3EIL4 EXPRESSION TAG SEQADV 5YDP THR A 5 UNP G3EIL4 EXPRESSION TAG SEQADV 5YDP LEU A 33 UNP G3EIL4 PHE 28 CONFLICT SEQADV 5YDP THR A 143 UNP G3EIL4 PRO 138 CONFLICT SEQADV 5YDP HIS B -15 UNP G3EIL4 EXPRESSION TAG SEQADV 5YDP HIS B -14 UNP G3EIL4 EXPRESSION TAG SEQADV 5YDP HIS B -13 UNP G3EIL4 EXPRESSION TAG SEQADV 5YDP HIS B -12 UNP G3EIL4 EXPRESSION TAG SEQADV 5YDP HIS B -11 UNP G3EIL4 EXPRESSION TAG SEQADV 5YDP HIS B -10 UNP G3EIL4 EXPRESSION TAG SEQADV 5YDP SER B -9 UNP G3EIL4 EXPRESSION TAG SEQADV 5YDP SER B -8 UNP G3EIL4 EXPRESSION TAG SEQADV 5YDP GLY B -7 UNP G3EIL4 EXPRESSION TAG SEQADV 5YDP LEU B -6 UNP G3EIL4 EXPRESSION TAG SEQADV 5YDP VAL B -5 UNP G3EIL4 EXPRESSION TAG SEQADV 5YDP PRO B -4 UNP G3EIL4 EXPRESSION TAG SEQADV 5YDP ARG B -3 UNP G3EIL4 EXPRESSION TAG SEQADV 5YDP GLY B -2 UNP G3EIL4 EXPRESSION TAG SEQADV 5YDP SER B -1 UNP G3EIL4 EXPRESSION TAG SEQADV 5YDP HIS B 0 UNP G3EIL4 EXPRESSION TAG SEQADV 5YDP MSE B 1 UNP G3EIL4 EXPRESSION TAG SEQADV 5YDP ARG B 2 UNP G3EIL4 EXPRESSION TAG SEQADV 5YDP SER B 3 UNP G3EIL4 EXPRESSION TAG SEQADV 5YDP GLY B 4 UNP G3EIL4 EXPRESSION TAG SEQADV 5YDP THR B 5 UNP G3EIL4 EXPRESSION TAG SEQADV 5YDP LEU B 33 UNP G3EIL4 PHE 28 CONFLICT SEQADV 5YDP THR B 143 UNP G3EIL4 PRO 138 CONFLICT SEQADV 5YDP HIS C -15 UNP G3EIL4 EXPRESSION TAG SEQADV 5YDP HIS C -14 UNP G3EIL4 EXPRESSION TAG SEQADV 5YDP HIS C -13 UNP G3EIL4 EXPRESSION TAG SEQADV 5YDP HIS C -12 UNP G3EIL4 EXPRESSION TAG SEQADV 5YDP HIS C -11 UNP G3EIL4 EXPRESSION TAG SEQADV 5YDP HIS C -10 UNP G3EIL4 EXPRESSION TAG SEQADV 5YDP SER C -9 UNP G3EIL4 EXPRESSION TAG SEQADV 5YDP SER C -8 UNP G3EIL4 EXPRESSION TAG SEQADV 5YDP GLY C -7 UNP G3EIL4 EXPRESSION TAG SEQADV 5YDP LEU C -6 UNP G3EIL4 EXPRESSION TAG SEQADV 5YDP VAL C -5 UNP G3EIL4 EXPRESSION TAG SEQADV 5YDP PRO C -4 UNP G3EIL4 EXPRESSION TAG SEQADV 5YDP ARG C -3 UNP G3EIL4 EXPRESSION TAG SEQADV 5YDP GLY C -2 UNP G3EIL4 EXPRESSION TAG SEQADV 5YDP SER C -1 UNP G3EIL4 EXPRESSION TAG SEQADV 5YDP HIS C 0 UNP G3EIL4 EXPRESSION TAG SEQADV 5YDP MSE C 1 UNP G3EIL4 EXPRESSION TAG SEQADV 5YDP ARG C 2 UNP G3EIL4 EXPRESSION TAG SEQADV 5YDP SER C 3 UNP G3EIL4 EXPRESSION TAG SEQADV 5YDP GLY C 4 UNP G3EIL4 EXPRESSION TAG SEQADV 5YDP THR C 5 UNP G3EIL4 EXPRESSION TAG SEQADV 5YDP LEU C 33 UNP G3EIL4 PHE 28 CONFLICT SEQADV 5YDP THR C 143 UNP G3EIL4 PRO 138 CONFLICT SEQRES 1 A 235 HIS HIS HIS HIS HIS HIS SER SER GLY LEU VAL PRO ARG SEQRES 2 A 235 GLY SER HIS MSE ARG SER GLY THR MSE ASP ARG MSE PRO SEQRES 3 A 235 PRO ARG PRO SER THR ARG ASP GLN ARG SER SER GLY ASP SEQRES 4 A 235 SER ARG GLY GLY ARG TRP SER PRO ARG LEU THR VAL PHE SEQRES 5 A 235 ASP ALA MSE HIS GLN LEU LEU GLU SER ARG ASP TRP SER SEQRES 6 A 235 ALA VAL THR MSE SER ASP VAL ALA LYS ALA ALA GLY LEU SEQRES 7 A 235 SER ARG GLN THR LEU TYR SER THR PHE GLY ASN ARG GLN SEQRES 8 A 235 GLY LEU ALA GLN ALA TYR ALA LEU GLN LEU SER GLU LYS SEQRES 9 A 235 PHE ALA GLY GLU ILE ARG ASP SER ILE ILE ARG HIS PRO SEQRES 10 A 235 GLY GLN ILE GLU LEU ALA LEU SER GLU GLY ILE ASN GLY SEQRES 11 A 235 PHE LEU ARG SER SER SER ARG ASP PRO LEU ILE ARG ALA SEQRES 12 A 235 LEU VAL THR GLY ASP ILE LYS PRO ASP LEU LEU ARG LEU SEQRES 13 A 235 ILE THR THR GLU ALA GLY PRO LEU ILE GLU ARG ALA THR SEQRES 14 A 235 GLU VAL LEU MSE PRO ALA LEU SER GLU SER TRP MSE ARG SEQRES 15 A 235 ILE GLU ALA SER GLN ALA ARG LEU ALA ALA SER ILE ILE SEQRES 16 A 235 ALA ARG ILE GLY ILE SER PHE ILE SER LEU PRO PRO GLU SEQRES 17 A 235 ASP PRO ASP GLN LEU ALA SER GLY LEU THR GLU VAL ILE SEQRES 18 A 235 ALA PRO TYR LEU GLN LYS VAL VAL GLN VAL ASP VAL GLN SEQRES 19 A 235 GLN SEQRES 1 B 235 HIS HIS HIS HIS HIS HIS SER SER GLY LEU VAL PRO ARG SEQRES 2 B 235 GLY SER HIS MSE ARG SER GLY THR MSE ASP ARG MSE PRO SEQRES 3 B 235 PRO ARG PRO SER THR ARG ASP GLN ARG SER SER GLY ASP SEQRES 4 B 235 SER ARG GLY GLY ARG TRP SER PRO ARG LEU THR VAL PHE SEQRES 5 B 235 ASP ALA MSE HIS GLN LEU LEU GLU SER ARG ASP TRP SER SEQRES 6 B 235 ALA VAL THR MSE SER ASP VAL ALA LYS ALA ALA GLY LEU SEQRES 7 B 235 SER ARG GLN THR LEU TYR SER THR PHE GLY ASN ARG GLN SEQRES 8 B 235 GLY LEU ALA GLN ALA TYR ALA LEU GLN LEU SER GLU LYS SEQRES 9 B 235 PHE ALA GLY GLU ILE ARG ASP SER ILE ILE ARG HIS PRO SEQRES 10 B 235 GLY GLN ILE GLU LEU ALA LEU SER GLU GLY ILE ASN GLY SEQRES 11 B 235 PHE LEU ARG SER SER SER ARG ASP PRO LEU ILE ARG ALA SEQRES 12 B 235 LEU VAL THR GLY ASP ILE LYS PRO ASP LEU LEU ARG LEU SEQRES 13 B 235 ILE THR THR GLU ALA GLY PRO LEU ILE GLU ARG ALA THR SEQRES 14 B 235 GLU VAL LEU MSE PRO ALA LEU SER GLU SER TRP MSE ARG SEQRES 15 B 235 ILE GLU ALA SER GLN ALA ARG LEU ALA ALA SER ILE ILE SEQRES 16 B 235 ALA ARG ILE GLY ILE SER PHE ILE SER LEU PRO PRO GLU SEQRES 17 B 235 ASP PRO ASP GLN LEU ALA SER GLY LEU THR GLU VAL ILE SEQRES 18 B 235 ALA PRO TYR LEU GLN LYS VAL VAL GLN VAL ASP VAL GLN SEQRES 19 B 235 GLN SEQRES 1 C 235 HIS HIS HIS HIS HIS HIS SER SER GLY LEU VAL PRO ARG SEQRES 2 C 235 GLY SER HIS MSE ARG SER GLY THR MSE ASP ARG MSE PRO SEQRES 3 C 235 PRO ARG PRO SER THR ARG ASP GLN ARG SER SER GLY ASP SEQRES 4 C 235 SER ARG GLY GLY ARG TRP SER PRO ARG LEU THR VAL PHE SEQRES 5 C 235 ASP ALA MSE HIS GLN LEU LEU GLU SER ARG ASP TRP SER SEQRES 6 C 235 ALA VAL THR MSE SER ASP VAL ALA LYS ALA ALA GLY LEU SEQRES 7 C 235 SER ARG GLN THR LEU TYR SER THR PHE GLY ASN ARG GLN SEQRES 8 C 235 GLY LEU ALA GLN ALA TYR ALA LEU GLN LEU SER GLU LYS SEQRES 9 C 235 PHE ALA GLY GLU ILE ARG ASP SER ILE ILE ARG HIS PRO SEQRES 10 C 235 GLY GLN ILE GLU LEU ALA LEU SER GLU GLY ILE ASN GLY SEQRES 11 C 235 PHE LEU ARG SER SER SER ARG ASP PRO LEU ILE ARG ALA SEQRES 12 C 235 LEU VAL THR GLY ASP ILE LYS PRO ASP LEU LEU ARG LEU SEQRES 13 C 235 ILE THR THR GLU ALA GLY PRO LEU ILE GLU ARG ALA THR SEQRES 14 C 235 GLU VAL LEU MSE PRO ALA LEU SER GLU SER TRP MSE ARG SEQRES 15 C 235 ILE GLU ALA SER GLN ALA ARG LEU ALA ALA SER ILE ILE SEQRES 16 C 235 ALA ARG ILE GLY ILE SER PHE ILE SER LEU PRO PRO GLU SEQRES 17 C 235 ASP PRO ASP GLN LEU ALA SER GLY LEU THR GLU VAL ILE SEQRES 18 C 235 ALA PRO TYR LEU GLN LYS VAL VAL GLN VAL ASP VAL GLN SEQRES 19 C 235 GLN MODRES 5YDP MSE A 39 MET MODIFIED RESIDUE MODRES 5YDP MSE A 53 MET MODIFIED RESIDUE MODRES 5YDP MSE A 157 MET MODIFIED RESIDUE MODRES 5YDP MSE A 165 MET MODIFIED RESIDUE MODRES 5YDP MSE B 39 MET MODIFIED RESIDUE MODRES 5YDP MSE B 53 MET MODIFIED RESIDUE MODRES 5YDP MSE B 157 MET MODIFIED RESIDUE MODRES 5YDP MSE B 165 MET MODIFIED RESIDUE MODRES 5YDP MSE C 39 MET MODIFIED RESIDUE MODRES 5YDP MSE C 53 MET MODIFIED RESIDUE MODRES 5YDP MSE C 157 MET MODIFIED RESIDUE MODRES 5YDP MSE C 165 MET MODIFIED RESIDUE HET MSE A 39 8 HET MSE A 53 8 HET MSE A 157 8 HET MSE A 165 8 HET MSE B 39 8 HET MSE B 53 8 HET MSE B 157 13 HET MSE B 165 8 HET MSE C 39 8 HET MSE C 53 8 HET MSE C 157 13 HET MSE C 165 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 12(C5 H11 N O2 SE) HELIX 1 AA1 SER A 30 ARG A 46 1 17 HELIX 2 AA2 THR A 52 GLY A 61 1 10 HELIX 3 AA3 SER A 63 GLY A 72 1 10 HELIX 4 AA4 ASN A 73 HIS A 100 1 28 HELIX 5 AA5 GLN A 103 ASP A 122 1 20 HELIX 6 AA6 ASP A 122 LEU A 128 1 7 HELIX 7 AA7 ASP A 136 GLU A 144 1 9 HELIX 8 AA8 GLY A 146 GLU A 162 1 17 HELIX 9 AA9 GLU A 168 LEU A 189 1 22 HELIX 10 AB1 PRO A 194 VAL A 213 1 20 HELIX 11 AB2 ARG B 32 GLU B 44 1 13 HELIX 12 AB3 THR B 52 GLY B 61 1 10 HELIX 13 AB4 SER B 63 GLY B 72 1 10 HELIX 14 AB5 ASN B 73 HIS B 100 1 28 HELIX 15 AB6 GLN B 103 ASP B 122 1 20 HELIX 16 AB7 ASP B 122 VAL B 129 1 8 HELIX 17 AB8 ASP B 136 GLU B 144 1 9 HELIX 18 AB9 GLY B 146 GLU B 162 1 17 HELIX 19 AC1 GLU B 168 LEU B 189 1 22 HELIX 20 AC2 ASP B 195 VAL B 213 1 19 HELIX 21 AC3 ARG C 32 ARG C 46 1 15 HELIX 22 AC4 THR C 52 GLY C 61 1 10 HELIX 23 AC5 SER C 63 GLY C 72 1 10 HELIX 24 AC6 ASN C 73 HIS C 100 1 28 HELIX 25 AC7 GLN C 103 ASP C 122 1 20 HELIX 26 AC8 ASP C 136 GLU C 144 1 9 HELIX 27 AC9 ALA C 145 GLU C 162 1 18 HELIX 28 AD1 GLU C 168 LEU C 189 1 22 HELIX 29 AD2 ASP C 195 VAL C 213 1 19 LINK C ALA A 38 N MSE A 39 1555 1555 1.33 LINK C MSE A 39 N HIS A 40 1555 1555 1.33 LINK C THR A 52 N MSE A 53 1555 1555 1.34 LINK C MSE A 53 N SER A 54 1555 1555 1.34 LINK C LEU A 156 N MSE A 157 1555 1555 1.32 LINK C MSE A 157 N PRO A 158 1555 1555 1.34 LINK C TRP A 164 N MSE A 165 1555 1555 1.34 LINK C MSE A 165 N ARG A 166 1555 1555 1.33 LINK C ALA B 38 N MSE B 39 1555 1555 1.34 LINK C MSE B 39 N HIS B 40 1555 1555 1.34 LINK C THR B 52 N MSE B 53 1555 1555 1.34 LINK C MSE B 53 N SER B 54 1555 1555 1.33 LINK C LEU B 156 N MSE B 157 1555 1555 1.33 LINK C MSE B 157 N PRO B 158 1555 1555 1.36 LINK C TRP B 164 N MSE B 165 1555 1555 1.33 LINK C MSE B 165 N ARG B 166 1555 1555 1.34 LINK C ALA C 38 N MSE C 39 1555 1555 1.33 LINK C MSE C 39 N HIS C 40 1555 1555 1.34 LINK C THR C 52 N MSE C 53 1555 1555 1.32 LINK C MSE C 53 N SER C 54 1555 1555 1.33 LINK C LEU C 156 N MSE C 157 1555 1555 1.34 LINK C MSE C 157 N PRO C 158 1555 1555 1.34 LINK C TRP C 164 N MSE C 165 1555 1555 1.33 LINK C MSE C 165 N ARG C 166 1555 1555 1.33 CRYST1 109.662 179.711 56.646 90.00 110.52 90.00 C 1 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009119 0.000000 0.003412 0.00000 SCALE2 0.000000 0.005564 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018849 0.00000