data_5YDT # _entry.id 5YDT # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5YDT pdb_00005ydt 10.2210/pdb5ydt/pdb WWPDB D_1300005105 ? ? EMDB EMD-6696 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2017-11-01 2 'Structure model' 1 1 2017-12-06 3 'Structure model' 1 2 2018-02-28 4 'Structure model' 1 3 2019-11-06 5 'Structure model' 1 4 2024-03-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' Other 3 4 'Structure model' 'Data collection' 4 4 'Structure model' Other 5 5 'Structure model' 'Data collection' 6 5 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 3 'Structure model' pdbx_database_status 3 4 'Structure model' cell 4 5 'Structure model' chem_comp_atom 5 5 'Structure model' chem_comp_bond 6 5 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 3 'Structure model' '_pdbx_database_status.pdb_format_compatible' 5 4 'Structure model' '_cell.Z_PDB' 6 5 'Structure model' '_database_2.pdbx_DOI' 7 5 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5YDT _pdbx_database_status.recvd_initial_deposition_date 2017-09-14 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible N _pdbx_database_status.status_code_nmr_data ? # _pdbx_database_related.db_name EMDB _pdbx_database_related.details . _pdbx_database_related.db_id EMD-6696 _pdbx_database_related.content_type 'associated EM volume' # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Ye, K.' 1 0000-0001-6169-7049 'Zhu, X.' 2 ? 'Hu, J.' 3 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev RNA _citation.journal_id_ASTM RNARFU _citation.journal_id_CSD 2122 _citation.journal_id_ISSN 1469-9001 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 23 _citation.language ? _citation.page_first 1936 _citation.page_last 1945 _citation.title 'Structure and RNA recognition of ribosome assembly factor Utp30.' _citation.year 2017 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1261/rna.062695.117 _citation.pdbx_database_id_PubMed 28951391 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Hu, J.' 1 ? primary 'Zhu, X.' 2 ? primary 'Ye, K.' 3 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'Ribosome biogenesis protein UTP30' 31668.939 1 ? ? ? ? 2 polymer nat 'Saccharomyces cerevisiae strain ALI 308 18S ribosomal RNA gene, partial sequence' 20614.229 1 ? ? ? ? 3 polymer nat ;5' ETS RNA ; 6031.593 1 ? ? ? ? 4 polymer nat 'Unassigned helices' 2911.580 1 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'U3 snoRNP-associated protein UTP30' 2 '18S ribosomal RNA' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;MVESNDIIKSGLAEKALKALILQCEENPSLKNDKDIHIIINTGKKMGINRDNIPRIIPLTKYKLFKPRDLNILLITKDPS ALYRETLTKDEHTSELFKEIISVKNLRRRFKGSKLTQLYKDFDLVVADYRVHHLLPEVLGSRFYHGSKKLPYMIRMSKEV KLKRQQMVEKCDPIYVRAQLRSICKNTSYIPNNDNCLSVRVGYIQKHSIPEILQNIQDTINFLTDKSKRPQGGVIKGGII SIFVKTSNSTSLPIYQFSEARENQKNEDLSDIKL ; ;MVESNDIIKSGLAEKALKALILQCEENPSLKNDKDIHIIINTGKKMGINRDNIPRIIPLTKYKLFKPRDLNILLITKDPS ALYRETLTKDEHTSELFKEIISVKNLRRRFKGSKLTQLYKDFDLVVADYRVHHLLPEVLGSRFYHGSKKLPYMIRMSKEV KLKRQQMVEKCDPIYVRAQLRSICKNTSYIPNNDNCLSVRVGYIQKHSIPEILQNIQDTINFLTDKSKRPQGGVIKGGII SIFVKTSNSTSLPIYQFSEARENQKNEDLSDIKL ; U5 ? 2 polyribonucleotide no no GACGGAGCCAGCGAGUCUAACCUUGGCCGAGAGGUCUUGGUAAUCUUGUGAAACUCCGUCGUGC GACGGAGCCAGCGAGUCUAACCUUGGCCGAGAGGUCUUGGUAAUCUUGUGAAACUCCGUCGUGC SA ? 3 polyribonucleotide no no UGGGCAUCUUGCGAUUCCA UGGGCAUCUUGCGAUUCCA 5A ? 4 'polypeptide(L)' no no ;(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK) ; XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX UC ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 VAL n 1 3 GLU n 1 4 SER n 1 5 ASN n 1 6 ASP n 1 7 ILE n 1 8 ILE n 1 9 LYS n 1 10 SER n 1 11 GLY n 1 12 LEU n 1 13 ALA n 1 14 GLU n 1 15 LYS n 1 16 ALA n 1 17 LEU n 1 18 LYS n 1 19 ALA n 1 20 LEU n 1 21 ILE n 1 22 LEU n 1 23 GLN n 1 24 CYS n 1 25 GLU n 1 26 GLU n 1 27 ASN n 1 28 PRO n 1 29 SER n 1 30 LEU n 1 31 LYS n 1 32 ASN n 1 33 ASP n 1 34 LYS n 1 35 ASP n 1 36 ILE n 1 37 HIS n 1 38 ILE n 1 39 ILE n 1 40 ILE n 1 41 ASN n 1 42 THR n 1 43 GLY n 1 44 LYS n 1 45 LYS n 1 46 MET n 1 47 GLY n 1 48 ILE n 1 49 ASN n 1 50 ARG n 1 51 ASP n 1 52 ASN n 1 53 ILE n 1 54 PRO n 1 55 ARG n 1 56 ILE n 1 57 ILE n 1 58 PRO n 1 59 LEU n 1 60 THR n 1 61 LYS n 1 62 TYR n 1 63 LYS n 1 64 LEU n 1 65 PHE n 1 66 LYS n 1 67 PRO n 1 68 ARG n 1 69 ASP n 1 70 LEU n 1 71 ASN n 1 72 ILE n 1 73 LEU n 1 74 LEU n 1 75 ILE n 1 76 THR n 1 77 LYS n 1 78 ASP n 1 79 PRO n 1 80 SER n 1 81 ALA n 1 82 LEU n 1 83 TYR n 1 84 ARG n 1 85 GLU n 1 86 THR n 1 87 LEU n 1 88 THR n 1 89 LYS n 1 90 ASP n 1 91 GLU n 1 92 HIS n 1 93 THR n 1 94 SER n 1 95 GLU n 1 96 LEU n 1 97 PHE n 1 98 LYS n 1 99 GLU n 1 100 ILE n 1 101 ILE n 1 102 SER n 1 103 VAL n 1 104 LYS n 1 105 ASN n 1 106 LEU n 1 107 ARG n 1 108 ARG n 1 109 ARG n 1 110 PHE n 1 111 LYS n 1 112 GLY n 1 113 SER n 1 114 LYS n 1 115 LEU n 1 116 THR n 1 117 GLN n 1 118 LEU n 1 119 TYR n 1 120 LYS n 1 121 ASP n 1 122 PHE n 1 123 ASP n 1 124 LEU n 1 125 VAL n 1 126 VAL n 1 127 ALA n 1 128 ASP n 1 129 TYR n 1 130 ARG n 1 131 VAL n 1 132 HIS n 1 133 HIS n 1 134 LEU n 1 135 LEU n 1 136 PRO n 1 137 GLU n 1 138 VAL n 1 139 LEU n 1 140 GLY n 1 141 SER n 1 142 ARG n 1 143 PHE n 1 144 TYR n 1 145 HIS n 1 146 GLY n 1 147 SER n 1 148 LYS n 1 149 LYS n 1 150 LEU n 1 151 PRO n 1 152 TYR n 1 153 MET n 1 154 ILE n 1 155 ARG n 1 156 MET n 1 157 SER n 1 158 LYS n 1 159 GLU n 1 160 VAL n 1 161 LYS n 1 162 LEU n 1 163 LYS n 1 164 ARG n 1 165 GLN n 1 166 GLN n 1 167 MET n 1 168 VAL n 1 169 GLU n 1 170 LYS n 1 171 CYS n 1 172 ASP n 1 173 PRO n 1 174 ILE n 1 175 TYR n 1 176 VAL n 1 177 ARG n 1 178 ALA n 1 179 GLN n 1 180 LEU n 1 181 ARG n 1 182 SER n 1 183 ILE n 1 184 CYS n 1 185 LYS n 1 186 ASN n 1 187 THR n 1 188 SER n 1 189 TYR n 1 190 ILE n 1 191 PRO n 1 192 ASN n 1 193 ASN n 1 194 ASP n 1 195 ASN n 1 196 CYS n 1 197 LEU n 1 198 SER n 1 199 VAL n 1 200 ARG n 1 201 VAL n 1 202 GLY n 1 203 TYR n 1 204 ILE n 1 205 GLN n 1 206 LYS n 1 207 HIS n 1 208 SER n 1 209 ILE n 1 210 PRO n 1 211 GLU n 1 212 ILE n 1 213 LEU n 1 214 GLN n 1 215 ASN n 1 216 ILE n 1 217 GLN n 1 218 ASP n 1 219 THR n 1 220 ILE n 1 221 ASN n 1 222 PHE n 1 223 LEU n 1 224 THR n 1 225 ASP n 1 226 LYS n 1 227 SER n 1 228 LYS n 1 229 ARG n 1 230 PRO n 1 231 GLN n 1 232 GLY n 1 233 GLY n 1 234 VAL n 1 235 ILE n 1 236 LYS n 1 237 GLY n 1 238 GLY n 1 239 ILE n 1 240 ILE n 1 241 SER n 1 242 ILE n 1 243 PHE n 1 244 VAL n 1 245 LYS n 1 246 THR n 1 247 SER n 1 248 ASN n 1 249 SER n 1 250 THR n 1 251 SER n 1 252 LEU n 1 253 PRO n 1 254 ILE n 1 255 TYR n 1 256 GLN n 1 257 PHE n 1 258 SER n 1 259 GLU n 1 260 ALA n 1 261 ARG n 1 262 GLU n 1 263 ASN n 1 264 GLN n 1 265 LYS n 1 266 ASN n 1 267 GLU n 1 268 ASP n 1 269 LEU n 1 270 SER n 1 271 ASP n 1 272 ILE n 1 273 LYS n 1 274 LEU n 2 1 G n 2 2 A n 2 3 C n 2 4 G n 2 5 G n 2 6 A n 2 7 G n 2 8 C n 2 9 C n 2 10 A n 2 11 G n 2 12 C n 2 13 G n 2 14 A n 2 15 G n 2 16 U n 2 17 C n 2 18 U n 2 19 A n 2 20 A n 2 21 C n 2 22 C n 2 23 U n 2 24 U n 2 25 G n 2 26 G n 2 27 C n 2 28 C n 2 29 G n 2 30 A n 2 31 G n 2 32 A n 2 33 G n 2 34 G n 2 35 U n 2 36 C n 2 37 U n 2 38 U n 2 39 G n 2 40 G n 2 41 U n 2 42 A n 2 43 A n 2 44 U n 2 45 C n 2 46 U n 2 47 U n 2 48 G n 2 49 U n 2 50 G n 2 51 A n 2 52 A n 2 53 A n 2 54 C n 2 55 U n 2 56 C n 2 57 C n 2 58 G n 2 59 U n 2 60 C n 2 61 G n 2 62 U n 2 63 G n 2 64 C n 3 1 U n 3 2 G n 3 3 G n 3 4 G n 3 5 C n 3 6 A n 3 7 U n 3 8 C n 3 9 U n 3 10 U n 3 11 G n 3 12 C n 3 13 G n 3 14 A n 3 15 U n 3 16 U n 3 17 C n 3 18 C n 3 19 A n 4 1 UNK n 4 2 UNK n 4 3 UNK n 4 4 UNK n 4 5 UNK n 4 6 UNK n 4 7 UNK n 4 8 UNK n 4 9 UNK n 4 10 UNK n 4 11 UNK n 4 12 UNK n 4 13 UNK n 4 14 UNK n 4 15 UNK n 4 16 UNK n 4 17 UNK n 4 18 UNK n 4 19 UNK n 4 20 UNK n 4 21 UNK n 4 22 UNK n 4 23 UNK n 4 24 UNK n 4 25 UNK n 4 26 UNK n 4 27 UNK n 4 28 UNK n 4 29 UNK n 4 30 UNK n 4 31 UNK n 4 32 UNK n 4 33 UNK n 4 34 UNK n # loop_ _entity_src_nat.entity_id _entity_src_nat.pdbx_src_id _entity_src_nat.pdbx_alt_source_flag _entity_src_nat.pdbx_beg_seq_num _entity_src_nat.pdbx_end_seq_num _entity_src_nat.common_name _entity_src_nat.pdbx_organism_scientific _entity_src_nat.pdbx_ncbi_taxonomy_id _entity_src_nat.genus _entity_src_nat.species _entity_src_nat.strain _entity_src_nat.tissue _entity_src_nat.tissue_fraction _entity_src_nat.pdbx_secretion _entity_src_nat.pdbx_fragment _entity_src_nat.pdbx_variant _entity_src_nat.pdbx_cell_line _entity_src_nat.pdbx_atcc _entity_src_nat.pdbx_cellular_location _entity_src_nat.pdbx_organ _entity_src_nat.pdbx_organelle _entity_src_nat.pdbx_cell _entity_src_nat.pdbx_plasmid_name _entity_src_nat.pdbx_plasmid_details _entity_src_nat.details 1 1 sample 1 274 ;Baker's yeast ; 'Saccharomyces cerevisiae (strain ATCC 204508 / S288c)' 559292 ? ? 'ATCC 204508 / S288c' ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample 1 64 ? 'Saccharomyces cerevisiae' 4932 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 3 1 sample 1 19 ? 'Saccharomyces cerevisiae S288c' 559292 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 4 1 sample 1 34 ? 'Saccharomyces cerevisiae S288c' 559292 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 UNK 'L-peptide linking' . UNKNOWN ? 'C4 H9 N O2' 103.120 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? U5 . n A 1 2 VAL 2 2 ? ? ? U5 . n A 1 3 GLU 3 3 ? ? ? U5 . n A 1 4 SER 4 4 ? ? ? U5 . n A 1 5 ASN 5 5 ? ? ? U5 . n A 1 6 ASP 6 6 ? ? ? U5 . n A 1 7 ILE 7 7 ? ? ? U5 . n A 1 8 ILE 8 8 ? ? ? U5 . n A 1 9 LYS 9 9 ? ? ? U5 . n A 1 10 SER 10 10 ? ? ? U5 . n A 1 11 GLY 11 11 11 GLY GLY U5 . n A 1 12 LEU 12 12 12 LEU LEU U5 . n A 1 13 ALA 13 13 13 ALA ALA U5 . n A 1 14 GLU 14 14 14 GLU GLU U5 . n A 1 15 LYS 15 15 15 LYS LYS U5 . n A 1 16 ALA 16 16 16 ALA ALA U5 . n A 1 17 LEU 17 17 17 LEU LEU U5 . n A 1 18 LYS 18 18 18 LYS LYS U5 . n A 1 19 ALA 19 19 19 ALA ALA U5 . n A 1 20 LEU 20 20 20 LEU LEU U5 . n A 1 21 ILE 21 21 21 ILE ILE U5 . n A 1 22 LEU 22 22 22 LEU LEU U5 . n A 1 23 GLN 23 23 23 GLN GLN U5 . n A 1 24 CYS 24 24 24 CYS CYS U5 . n A 1 25 GLU 25 25 25 GLU GLU U5 . n A 1 26 GLU 26 26 26 GLU GLU U5 . n A 1 27 ASN 27 27 27 ASN ASN U5 . n A 1 28 PRO 28 28 28 PRO PRO U5 . n A 1 29 SER 29 29 29 SER SER U5 . n A 1 30 LEU 30 30 30 LEU LEU U5 . n A 1 31 LYS 31 31 31 LYS LYS U5 . n A 1 32 ASN 32 32 32 ASN ASN U5 . n A 1 33 ASP 33 33 33 ASP ASP U5 . n A 1 34 LYS 34 34 34 LYS LYS U5 . n A 1 35 ASP 35 35 35 ASP ASP U5 . n A 1 36 ILE 36 36 36 ILE ILE U5 . n A 1 37 HIS 37 37 37 HIS HIS U5 . n A 1 38 ILE 38 38 38 ILE ILE U5 . n A 1 39 ILE 39 39 39 ILE ILE U5 . n A 1 40 ILE 40 40 40 ILE ILE U5 . n A 1 41 ASN 41 41 41 ASN ASN U5 . n A 1 42 THR 42 42 42 THR THR U5 . n A 1 43 GLY 43 43 43 GLY GLY U5 . n A 1 44 LYS 44 44 44 LYS LYS U5 . n A 1 45 LYS 45 45 45 LYS LYS U5 . n A 1 46 MET 46 46 46 MET MET U5 . n A 1 47 GLY 47 47 47 GLY GLY U5 . n A 1 48 ILE 48 48 48 ILE ILE U5 . n A 1 49 ASN 49 49 49 ASN ASN U5 . n A 1 50 ARG 50 50 50 ARG ARG U5 . n A 1 51 ASP 51 51 51 ASP ASP U5 . n A 1 52 ASN 52 52 52 ASN ASN U5 . n A 1 53 ILE 53 53 53 ILE ILE U5 . n A 1 54 PRO 54 54 54 PRO PRO U5 . n A 1 55 ARG 55 55 55 ARG ARG U5 . n A 1 56 ILE 56 56 56 ILE ILE U5 . n A 1 57 ILE 57 57 57 ILE ILE U5 . n A 1 58 PRO 58 58 58 PRO PRO U5 . n A 1 59 LEU 59 59 59 LEU LEU U5 . n A 1 60 THR 60 60 60 THR THR U5 . n A 1 61 LYS 61 61 61 LYS LYS U5 . n A 1 62 TYR 62 62 62 TYR TYR U5 . n A 1 63 LYS 63 63 63 LYS LYS U5 . n A 1 64 LEU 64 64 64 LEU LEU U5 . n A 1 65 PHE 65 65 65 PHE PHE U5 . n A 1 66 LYS 66 66 66 LYS LYS U5 . n A 1 67 PRO 67 67 67 PRO PRO U5 . n A 1 68 ARG 68 68 68 ARG ARG U5 . n A 1 69 ASP 69 69 69 ASP ASP U5 . n A 1 70 LEU 70 70 70 LEU LEU U5 . n A 1 71 ASN 71 71 71 ASN ASN U5 . n A 1 72 ILE 72 72 72 ILE ILE U5 . n A 1 73 LEU 73 73 73 LEU LEU U5 . n A 1 74 LEU 74 74 74 LEU LEU U5 . n A 1 75 ILE 75 75 75 ILE ILE U5 . n A 1 76 THR 76 76 76 THR THR U5 . n A 1 77 LYS 77 77 77 LYS LYS U5 . n A 1 78 ASP 78 78 78 ASP ASP U5 . n A 1 79 PRO 79 79 79 PRO PRO U5 . n A 1 80 SER 80 80 80 SER SER U5 . n A 1 81 ALA 81 81 81 ALA ALA U5 . n A 1 82 LEU 82 82 82 LEU LEU U5 . n A 1 83 TYR 83 83 83 TYR TYR U5 . n A 1 84 ARG 84 84 84 ARG ARG U5 . n A 1 85 GLU 85 85 85 GLU GLU U5 . n A 1 86 THR 86 86 86 THR THR U5 . n A 1 87 LEU 87 87 87 LEU LEU U5 . n A 1 88 THR 88 88 88 THR THR U5 . n A 1 89 LYS 89 89 89 LYS LYS U5 . n A 1 90 ASP 90 90 90 ASP ASP U5 . n A 1 91 GLU 91 91 91 GLU GLU U5 . n A 1 92 HIS 92 92 92 HIS HIS U5 . n A 1 93 THR 93 93 93 THR THR U5 . n A 1 94 SER 94 94 94 SER SER U5 . n A 1 95 GLU 95 95 95 GLU GLU U5 . n A 1 96 LEU 96 96 96 LEU LEU U5 . n A 1 97 PHE 97 97 97 PHE PHE U5 . n A 1 98 LYS 98 98 98 LYS LYS U5 . n A 1 99 GLU 99 99 99 GLU GLU U5 . n A 1 100 ILE 100 100 100 ILE ILE U5 . n A 1 101 ILE 101 101 101 ILE ILE U5 . n A 1 102 SER 102 102 102 SER SER U5 . n A 1 103 VAL 103 103 103 VAL VAL U5 . n A 1 104 LYS 104 104 104 LYS LYS U5 . n A 1 105 ASN 105 105 105 ASN ASN U5 . n A 1 106 LEU 106 106 106 LEU LEU U5 . n A 1 107 ARG 107 107 107 ARG ARG U5 . n A 1 108 ARG 108 108 108 ARG ARG U5 . n A 1 109 ARG 109 109 109 ARG ARG U5 . n A 1 110 PHE 110 110 110 PHE PHE U5 . n A 1 111 LYS 111 111 111 LYS LYS U5 . n A 1 112 GLY 112 112 112 GLY GLY U5 . n A 1 113 SER 113 113 113 SER SER U5 . n A 1 114 LYS 114 114 114 LYS LYS U5 . n A 1 115 LEU 115 115 115 LEU LEU U5 . n A 1 116 THR 116 116 116 THR THR U5 . n A 1 117 GLN 117 117 117 GLN GLN U5 . n A 1 118 LEU 118 118 118 LEU LEU U5 . n A 1 119 TYR 119 119 119 TYR TYR U5 . n A 1 120 LYS 120 120 120 LYS LYS U5 . n A 1 121 ASP 121 121 121 ASP ASP U5 . n A 1 122 PHE 122 122 122 PHE PHE U5 . n A 1 123 ASP 123 123 123 ASP ASP U5 . n A 1 124 LEU 124 124 124 LEU LEU U5 . n A 1 125 VAL 125 125 125 VAL VAL U5 . n A 1 126 VAL 126 126 126 VAL VAL U5 . n A 1 127 ALA 127 127 127 ALA ALA U5 . n A 1 128 ASP 128 128 128 ASP ASP U5 . n A 1 129 TYR 129 129 129 TYR TYR U5 . n A 1 130 ARG 130 130 130 ARG ARG U5 . n A 1 131 VAL 131 131 131 VAL VAL U5 . n A 1 132 HIS 132 132 132 HIS HIS U5 . n A 1 133 HIS 133 133 133 HIS HIS U5 . n A 1 134 LEU 134 134 134 LEU LEU U5 . n A 1 135 LEU 135 135 135 LEU LEU U5 . n A 1 136 PRO 136 136 136 PRO PRO U5 . n A 1 137 GLU 137 137 137 GLU GLU U5 . n A 1 138 VAL 138 138 138 VAL VAL U5 . n A 1 139 LEU 139 139 139 LEU LEU U5 . n A 1 140 GLY 140 140 140 GLY GLY U5 . n A 1 141 SER 141 141 141 SER SER U5 . n A 1 142 ARG 142 142 142 ARG ARG U5 . n A 1 143 PHE 143 143 143 PHE PHE U5 . n A 1 144 TYR 144 144 144 TYR TYR U5 . n A 1 145 HIS 145 145 145 HIS HIS U5 . n A 1 146 GLY 146 146 146 GLY GLY U5 . n A 1 147 SER 147 147 147 SER SER U5 . n A 1 148 LYS 148 148 148 LYS LYS U5 . n A 1 149 LYS 149 149 149 LYS LYS U5 . n A 1 150 LEU 150 150 150 LEU LEU U5 . n A 1 151 PRO 151 151 151 PRO PRO U5 . n A 1 152 TYR 152 152 152 TYR TYR U5 . n A 1 153 MET 153 153 153 MET MET U5 . n A 1 154 ILE 154 154 154 ILE ILE U5 . n A 1 155 ARG 155 155 155 ARG ARG U5 . n A 1 156 MET 156 156 156 MET MET U5 . n A 1 157 SER 157 157 157 SER SER U5 . n A 1 158 LYS 158 158 158 LYS LYS U5 . n A 1 159 GLU 159 159 159 GLU GLU U5 . n A 1 160 VAL 160 160 160 VAL VAL U5 . n A 1 161 LYS 161 161 161 LYS LYS U5 . n A 1 162 LEU 162 162 162 LEU LEU U5 . n A 1 163 LYS 163 163 163 LYS LYS U5 . n A 1 164 ARG 164 164 164 ARG ARG U5 . n A 1 165 GLN 165 165 165 GLN GLN U5 . n A 1 166 GLN 166 166 166 GLN GLN U5 . n A 1 167 MET 167 167 167 MET MET U5 . n A 1 168 VAL 168 168 168 VAL VAL U5 . n A 1 169 GLU 169 169 169 GLU GLU U5 . n A 1 170 LYS 170 170 170 LYS LYS U5 . n A 1 171 CYS 171 171 171 CYS CYS U5 . n A 1 172 ASP 172 172 172 ASP ASP U5 . n A 1 173 PRO 173 173 173 PRO PRO U5 . n A 1 174 ILE 174 174 174 ILE ILE U5 . n A 1 175 TYR 175 175 175 TYR TYR U5 . n A 1 176 VAL 176 176 176 VAL VAL U5 . n A 1 177 ARG 177 177 177 ARG ARG U5 . n A 1 178 ALA 178 178 178 ALA ALA U5 . n A 1 179 GLN 179 179 179 GLN GLN U5 . n A 1 180 LEU 180 180 180 LEU LEU U5 . n A 1 181 ARG 181 181 181 ARG ARG U5 . n A 1 182 SER 182 182 182 SER SER U5 . n A 1 183 ILE 183 183 183 ILE ILE U5 . n A 1 184 CYS 184 184 184 CYS CYS U5 . n A 1 185 LYS 185 185 185 LYS LYS U5 . n A 1 186 ASN 186 186 186 ASN ASN U5 . n A 1 187 THR 187 187 187 THR THR U5 . n A 1 188 SER 188 188 188 SER SER U5 . n A 1 189 TYR 189 189 189 TYR TYR U5 . n A 1 190 ILE 190 190 190 ILE ILE U5 . n A 1 191 PRO 191 191 191 PRO PRO U5 . n A 1 192 ASN 192 192 192 ASN ASN U5 . n A 1 193 ASN 193 193 193 ASN ASN U5 . n A 1 194 ASP 194 194 194 ASP ASP U5 . n A 1 195 ASN 195 195 195 ASN ASN U5 . n A 1 196 CYS 196 196 196 CYS CYS U5 . n A 1 197 LEU 197 197 197 LEU LEU U5 . n A 1 198 SER 198 198 198 SER SER U5 . n A 1 199 VAL 199 199 199 VAL VAL U5 . n A 1 200 ARG 200 200 200 ARG ARG U5 . n A 1 201 VAL 201 201 201 VAL VAL U5 . n A 1 202 GLY 202 202 202 GLY GLY U5 . n A 1 203 TYR 203 203 203 TYR TYR U5 . n A 1 204 ILE 204 204 204 ILE ILE U5 . n A 1 205 GLN 205 205 205 GLN GLN U5 . n A 1 206 LYS 206 206 206 LYS LYS U5 . n A 1 207 HIS 207 207 207 HIS HIS U5 . n A 1 208 SER 208 208 208 SER SER U5 . n A 1 209 ILE 209 209 209 ILE ILE U5 . n A 1 210 PRO 210 210 210 PRO PRO U5 . n A 1 211 GLU 211 211 211 GLU GLU U5 . n A 1 212 ILE 212 212 212 ILE ILE U5 . n A 1 213 LEU 213 213 213 LEU LEU U5 . n A 1 214 GLN 214 214 214 GLN GLN U5 . n A 1 215 ASN 215 215 215 ASN ASN U5 . n A 1 216 ILE 216 216 216 ILE ILE U5 . n A 1 217 GLN 217 217 217 GLN GLN U5 . n A 1 218 ASP 218 218 218 ASP ASP U5 . n A 1 219 THR 219 219 219 THR THR U5 . n A 1 220 ILE 220 220 220 ILE ILE U5 . n A 1 221 ASN 221 221 221 ASN ASN U5 . n A 1 222 PHE 222 222 222 PHE PHE U5 . n A 1 223 LEU 223 223 223 LEU LEU U5 . n A 1 224 THR 224 224 224 THR THR U5 . n A 1 225 ASP 225 225 225 ASP ASP U5 . n A 1 226 LYS 226 226 226 LYS LYS U5 . n A 1 227 SER 227 227 227 SER SER U5 . n A 1 228 LYS 228 228 228 LYS LYS U5 . n A 1 229 ARG 229 229 229 ARG ARG U5 . n A 1 230 PRO 230 230 230 PRO PRO U5 . n A 1 231 GLN 231 231 231 GLN GLN U5 . n A 1 232 GLY 232 232 232 GLY GLY U5 . n A 1 233 GLY 233 233 233 GLY GLY U5 . n A 1 234 VAL 234 234 234 VAL VAL U5 . n A 1 235 ILE 235 235 235 ILE ILE U5 . n A 1 236 LYS 236 236 236 LYS LYS U5 . n A 1 237 GLY 237 237 237 GLY GLY U5 . n A 1 238 GLY 238 238 238 GLY GLY U5 . n A 1 239 ILE 239 239 239 ILE ILE U5 . n A 1 240 ILE 240 240 240 ILE ILE U5 . n A 1 241 SER 241 241 241 SER SER U5 . n A 1 242 ILE 242 242 242 ILE ILE U5 . n A 1 243 PHE 243 243 243 PHE PHE U5 . n A 1 244 VAL 244 244 244 VAL VAL U5 . n A 1 245 LYS 245 245 245 LYS LYS U5 . n A 1 246 THR 246 246 246 THR THR U5 . n A 1 247 SER 247 247 247 SER SER U5 . n A 1 248 ASN 248 248 248 ASN ASN U5 . n A 1 249 SER 249 249 249 SER SER U5 . n A 1 250 THR 250 250 250 THR THR U5 . n A 1 251 SER 251 251 251 SER SER U5 . n A 1 252 LEU 252 252 252 LEU LEU U5 . n A 1 253 PRO 253 253 253 PRO PRO U5 . n A 1 254 ILE 254 254 254 ILE ILE U5 . n A 1 255 TYR 255 255 255 TYR TYR U5 . n A 1 256 GLN 256 256 256 GLN GLN U5 . n A 1 257 PHE 257 257 ? ? ? U5 . n A 1 258 SER 258 258 ? ? ? U5 . n A 1 259 GLU 259 259 ? ? ? U5 . n A 1 260 ALA 260 260 ? ? ? U5 . n A 1 261 ARG 261 261 ? ? ? U5 . n A 1 262 GLU 262 262 ? ? ? U5 . n A 1 263 ASN 263 263 ? ? ? U5 . n A 1 264 GLN 264 264 ? ? ? U5 . n A 1 265 LYS 265 265 ? ? ? U5 . n A 1 266 ASN 266 266 ? ? ? U5 . n A 1 267 GLU 267 267 ? ? ? U5 . n A 1 268 ASP 268 268 ? ? ? U5 . n A 1 269 LEU 269 269 ? ? ? U5 . n A 1 270 SER 270 270 ? ? ? U5 . n A 1 271 ASP 271 271 ? ? ? U5 . n A 1 272 ILE 272 272 ? ? ? U5 . n A 1 273 LYS 273 273 ? ? ? U5 . n A 1 274 LEU 274 274 ? ? ? U5 . n B 2 1 G 1 1474 1474 G G SA . n B 2 2 A 2 1475 1475 A A SA . n B 2 3 C 3 1476 1476 C C SA . n B 2 4 G 4 1477 1477 G G SA . n B 2 5 G 5 1478 1478 G G SA . n B 2 6 A 6 1479 1479 A A SA . n B 2 7 G 7 1480 1480 G G SA . n B 2 8 C 8 1481 1481 C C SA . n B 2 9 C 9 1482 1482 C C SA . n B 2 10 A 10 1483 1483 A A SA . n B 2 11 G 11 1484 1484 G G SA . n B 2 12 C 12 1485 1485 C C SA . n B 2 13 G 13 1486 1486 G G SA . n B 2 14 A 14 1487 1487 A A SA . n B 2 15 G 15 1488 1488 G G SA . n B 2 16 U 16 1489 ? ? ? SA . n B 2 17 C 17 1490 ? ? ? SA . n B 2 18 U 18 1491 ? ? ? SA . n B 2 19 A 19 1492 ? ? ? SA . n B 2 20 A 20 1493 ? ? ? SA . n B 2 21 C 21 1494 1494 C C SA . n B 2 22 C 22 1495 1495 C C SA . n B 2 23 U 23 1496 1496 U U SA . n B 2 24 U 24 1497 1497 U U SA . n B 2 25 G 25 1498 1498 G G SA . n B 2 26 G 26 1499 1499 G G SA . n B 2 27 C 27 1500 1500 C C SA . n B 2 28 C 28 1501 1501 C C SA . n B 2 29 G 29 1502 1502 G G SA . n B 2 30 A 30 1503 1503 A A SA . n B 2 31 G 31 1504 1504 G G SA . n B 2 32 A 32 1505 1505 A A SA . n B 2 33 G 33 1506 1506 G G SA . n B 2 34 G 34 1507 1507 G G SA . n B 2 35 U 35 1508 1508 U U SA . n B 2 36 C 36 1509 1509 C C SA . n B 2 37 U 37 1510 1510 U U SA . n B 2 38 U 38 1511 1511 U U SA . n B 2 39 G 39 1512 1512 G G SA . n B 2 40 G 40 1513 1513 G G SA . n B 2 41 U 41 1514 1514 U U SA . n B 2 42 A 42 1515 1515 A A SA . n B 2 43 A 43 1516 1516 A A SA . n B 2 44 U 44 1517 ? ? ? SA . n B 2 45 C 45 1518 ? ? ? SA . n B 2 46 U 46 1519 ? ? ? SA . n B 2 47 U 47 1520 ? ? ? SA . n B 2 48 G 48 1521 ? ? ? SA . n B 2 49 U 49 1522 ? ? ? SA . n B 2 50 G 50 1523 ? ? ? SA . n B 2 51 A 51 1524 1524 A A SA . n B 2 52 A 52 1525 1525 A A SA . n B 2 53 A 53 1526 1526 A A SA . n B 2 54 C 54 1527 1527 C C SA . n B 2 55 U 55 1528 1528 U U SA . n B 2 56 C 56 1529 1529 C C SA . n B 2 57 C 57 1530 1530 C C SA . n B 2 58 G 58 1531 1531 G G SA . n B 2 59 U 59 1532 1532 U U SA . n B 2 60 C 60 1533 1533 C C SA . n B 2 61 G 61 1534 1534 G G SA . n B 2 62 U 62 1535 1535 U U SA . n B 2 63 G 63 1536 1536 G G SA . n B 2 64 C 64 1537 1537 C C SA . n C 3 1 U 1 247 247 U U 5A . n C 3 2 G 2 248 248 G G 5A . n C 3 3 G 3 249 249 G G 5A . n C 3 4 G 4 250 250 G G 5A . n C 3 5 C 5 251 251 C C 5A . n C 3 6 A 6 252 252 A A 5A . n C 3 7 U 7 253 253 U U 5A . n C 3 8 C 8 254 ? ? ? 5A . n C 3 9 U 9 255 ? ? ? 5A . n C 3 10 U 10 256 ? ? ? 5A . n C 3 11 G 11 257 ? ? ? 5A . n C 3 12 C 12 258 ? ? ? 5A . n C 3 13 G 13 259 ? ? ? 5A . n C 3 14 A 14 260 260 A A 5A . n C 3 15 U 15 261 261 U U 5A . n C 3 16 U 16 262 262 U U 5A . n C 3 17 C 17 263 263 C C 5A . n C 3 18 C 18 264 264 C C 5A . n C 3 19 A 19 265 265 A A 5A . n D 4 1 UNK 1 881 881 UNK UNK UC . n D 4 2 UNK 2 882 882 UNK UNK UC . n D 4 3 UNK 3 883 883 UNK UNK UC . n D 4 4 UNK 4 884 884 UNK UNK UC . n D 4 5 UNK 5 885 885 UNK UNK UC . n D 4 6 UNK 6 886 886 UNK UNK UC . n D 4 7 UNK 7 887 887 UNK UNK UC . n D 4 8 UNK 8 888 888 UNK UNK UC . n D 4 9 UNK 9 889 889 UNK UNK UC . n D 4 10 UNK 10 890 890 UNK UNK UC . n D 4 11 UNK 11 891 891 UNK UNK UC . n D 4 12 UNK 12 892 892 UNK UNK UC . n D 4 13 UNK 13 893 893 UNK UNK UC . n D 4 14 UNK 14 894 894 UNK UNK UC . n D 4 15 UNK 15 895 895 UNK UNK UC . n D 4 16 UNK 16 896 896 UNK UNK UC . n D 4 17 UNK 17 897 897 UNK UNK UC . n D 4 18 UNK 18 898 898 UNK UNK UC . n D 4 19 UNK 19 899 899 UNK UNK UC . n D 4 20 UNK 20 900 900 UNK UNK UC . n D 4 21 UNK 21 901 901 UNK UNK UC . n D 4 22 UNK 22 902 902 UNK UNK UC . n D 4 23 UNK 23 903 903 UNK UNK UC . n D 4 24 UNK 24 904 904 UNK UNK UC . n D 4 25 UNK 25 905 905 UNK UNK UC . n D 4 26 UNK 26 906 906 UNK UNK UC . n D 4 27 UNK 27 907 907 UNK UNK UC . n D 4 28 UNK 28 908 908 UNK UNK UC . n D 4 29 UNK 29 909 909 UNK UNK UC . n D 4 30 UNK 30 910 910 UNK UNK UC . n D 4 31 UNK 31 911 911 UNK UNK UC . n D 4 32 UNK 32 912 912 UNK UNK UC . n D 4 33 UNK 33 913 913 UNK UNK UC . n D 4 34 UNK 34 914 914 UNK UNK UC . n # _cell.angle_alpha 90 _cell.angle_alpha_esd ? _cell.angle_beta 90 _cell.angle_beta_esd ? _cell.angle_gamma 90 _cell.angle_gamma_esd ? _cell.entry_id 5YDT _cell.details ? _cell.formula_units_Z ? _cell.length_a 1 _cell.length_a_esd ? _cell.length_b 1 _cell.length_b_esd ? _cell.length_c 1 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 1 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5YDT _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5YDT _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _struct.entry_id 5YDT _struct.title 'Remodeled Utp30 in 90S pre-ribosome (Mtr4-depleted, Enp1-TAP)' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5YDT _struct_keywords.text 'ribosome assembly, 90S pre-ribosome, RIBOSOME' _struct_keywords.pdbx_keywords RIBOSOME # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP RL1D1_YEAST P36144 ? 1 ;MVESNDIIKSGLAEKALKALILQCEENPSLKNDKDIHIIINTGKKMGINRDNIPRIIPLTKYKLFKPRDLNILLITKDPS ALYRETLTKDEHTSELFKEIISVKNLRRRFKGSKLTQLYKDFDLVVADYRVHHLLPEVLGSRFYHGSKKLPYMIRMSKEV KLKRQQMVEKCDPIYVRAQLRSICKNTSYIPNNDNCLSVRVGYIQKHSIPEILQNIQDTINFLTDKSKRPQGGVIKGGII SIFVKTSNSTSLPIYQFSEARENQKNEDLSDIKL ; 1 2 GB AF548094.1 33334408 ? 2 GACGGAGCCAGCGAGUCUAACCUUGGCCGAGAGGUCUUGGUAAUCUUGUGAAACUCCGUCGUGC 1398 3 PDB 5YDT 5YDT ? 3 ? 1 4 PDB 5YDT 5YDT ? 4 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5YDT U5 1 ? 274 ? P36144 1 ? 274 ? 1 274 2 2 5YDT SA 1 ? 64 ? 33334408 1398 ? 1461 ? 1474 1537 3 3 5YDT 5A 1 ? 19 ? 5YDT 247 ? 265 ? 247 265 4 4 5YDT UC 1 ? 34 ? 5YDT 881 ? 914 ? 881 914 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 GLY A 11 ? GLU A 25 ? GLY U5 11 GLU U5 25 1 ? 15 HELX_P HELX_P2 AA2 PRO A 79 ? ARG A 84 ? PRO U5 79 ARG U5 84 1 ? 6 HELX_P HELX_P3 AA3 VAL A 103 ? PHE A 110 ? VAL U5 103 PHE U5 110 1 ? 8 HELX_P HELX_P4 AA4 GLY A 112 ? THR A 116 ? GLY U5 112 THR U5 116 5 ? 5 HELX_P HELX_P5 AA5 GLN A 117 ? PHE A 122 ? GLN U5 117 PHE U5 122 1 ? 6 HELX_P HELX_P6 AA6 LEU A 134 ? GLY A 140 ? LEU U5 134 GLY U5 140 1 ? 7 HELX_P HELX_P7 AA7 ASP A 172 ? ASN A 186 ? ASP U5 172 ASN U5 186 1 ? 15 HELX_P HELX_P8 AA8 SER A 208 ? THR A 224 ? SER U5 208 THR U5 224 1 ? 17 HELX_P HELX_P9 AA9 UNK D 2 ? UNK D 31 ? UNK UC 882 UNK UC 911 1 ? 30 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? C U 1 N3 ? ? ? 1_555 C A 19 N1 ? ? 5A U 247 5A A 265 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? C U 1 O4 ? ? ? 1_555 C A 19 N6 ? ? 5A U 247 5A A 265 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? C G 2 N1 ? ? ? 1_555 C C 18 N3 ? ? 5A G 248 5A C 264 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? C G 2 N2 ? ? ? 1_555 C C 18 O2 ? ? 5A G 248 5A C 264 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? C G 2 O6 ? ? ? 1_555 C C 18 N4 ? ? 5A G 248 5A C 264 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? C G 3 N1 ? ? ? 1_555 C C 17 N3 ? ? 5A G 249 5A C 263 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? C G 3 N2 ? ? ? 1_555 C C 17 O2 ? ? 5A G 249 5A C 263 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? C G 3 O6 ? ? ? 1_555 C C 17 N4 ? ? 5A G 249 5A C 263 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? C G 4 N1 ? ? ? 1_555 C U 16 O2 ? ? 5A G 250 5A U 262 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog10 hydrog ? ? C G 4 O6 ? ? ? 1_555 C U 16 N3 ? ? 5A G 250 5A U 262 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog11 hydrog ? ? B G 1 N1 ? ? ? 1_555 B C 60 N3 ? ? SA G 1474 SA C 1533 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B G 1 N2 ? ? ? 1_555 B C 60 O2 ? ? SA G 1474 SA C 1533 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B G 1 O6 ? ? ? 1_555 B C 60 N4 ? ? SA G 1474 SA C 1533 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B A 2 N1 ? ? ? 1_555 B U 59 N3 ? ? SA A 1475 SA U 1532 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B A 2 N6 ? ? ? 1_555 B U 59 O4 ? ? SA A 1475 SA U 1532 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B C 3 N3 ? ? ? 1_555 B G 58 N1 ? ? SA C 1476 SA G 1531 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B C 3 N4 ? ? ? 1_555 B G 58 O6 ? ? SA C 1476 SA G 1531 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B C 3 O2 ? ? ? 1_555 B G 58 N2 ? ? SA C 1476 SA G 1531 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B G 4 N1 ? ? ? 1_555 B C 57 N3 ? ? SA G 1477 SA C 1530 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B G 4 N2 ? ? ? 1_555 B C 57 O2 ? ? SA G 1477 SA C 1530 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? B G 4 O6 ? ? ? 1_555 B C 57 N4 ? ? SA G 1477 SA C 1530 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? B G 5 N1 ? ? ? 1_555 B C 56 N3 ? ? SA G 1478 SA C 1529 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? B G 5 N2 ? ? ? 1_555 B C 56 O2 ? ? SA G 1478 SA C 1529 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? B G 5 O6 ? ? ? 1_555 B C 56 N4 ? ? SA G 1478 SA C 1529 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? B A 6 N1 ? ? ? 1_555 B U 55 N3 ? ? SA A 1479 SA U 1528 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? B A 6 N6 ? ? ? 1_555 B U 55 O4 ? ? SA A 1479 SA U 1528 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? B G 7 N1 ? ? ? 1_555 B C 54 N3 ? ? SA G 1480 SA C 1527 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? B G 7 N2 ? ? ? 1_555 B C 54 O2 ? ? SA G 1480 SA C 1527 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? B G 7 O6 ? ? ? 1_555 B C 54 N4 ? ? SA G 1480 SA C 1527 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? B C 8 O2 ? ? ? 1_555 B A 53 N6 ? ? SA C 1481 SA A 1526 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog31 hydrog ? ? B C 9 N3 ? ? ? 1_555 B A 52 N6 ? ? SA C 1482 SA A 1525 1_555 ? ? ? ? ? ? TYPE_25_PAIR ? ? ? hydrog32 hydrog ? ? B C 9 N4 ? ? ? 1_555 B A 52 N7 ? ? SA C 1482 SA A 1525 1_555 ? ? ? ? ? ? TYPE_25_PAIR ? ? ? hydrog33 hydrog ? ? B C 21 O2 ? ? ? 1_555 B G 40 N2 ? ? SA C 1494 SA G 1513 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog34 hydrog ? ? B C 21 O2 ? ? ? 1_555 B U 41 N3 ? ? SA C 1494 SA U 1514 1_555 ? ? ? ? ? ? 'C-U MISPAIR' ? ? ? hydrog35 hydrog ? ? B C 22 N3 ? ? ? 1_555 B G 39 N1 ? ? SA C 1495 SA G 1512 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? B C 22 N4 ? ? ? 1_555 B G 39 O6 ? ? SA C 1495 SA G 1512 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? B C 22 O2 ? ? ? 1_555 B G 39 N2 ? ? SA C 1495 SA G 1512 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? B C 22 N3 ? ? ? 1_555 B G 40 N1 ? ? SA C 1495 SA G 1513 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? B C 22 N4 ? ? ? 1_555 B G 40 O6 ? ? SA C 1495 SA G 1513 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? B C 22 O2 ? ? ? 1_555 B G 40 N2 ? ? SA C 1495 SA G 1513 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? B U 23 N3 ? ? ? 1_555 B U 38 O4 ? ? SA U 1496 SA U 1511 1_555 ? ? ? ? ? ? TYPE_12_PAIR ? ? ? hydrog42 hydrog ? ? B U 23 O4 ? ? ? 1_555 B U 38 N3 ? ? SA U 1496 SA U 1511 1_555 ? ? ? ? ? ? TYPE_12_PAIR ? ? ? hydrog43 hydrog ? ? B U 24 O4 ? ? ? 1_555 B U 37 N3 ? ? SA U 1497 SA U 1510 1_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog44 hydrog ? ? B G 25 N1 ? ? ? 1_555 B C 36 N3 ? ? SA G 1498 SA C 1509 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? B G 25 N2 ? ? ? 1_555 B C 36 O2 ? ? SA G 1498 SA C 1509 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? B G 25 O6 ? ? ? 1_555 B C 36 N4 ? ? SA G 1498 SA C 1509 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? B G 26 N1 ? ? ? 1_555 B U 35 O2 ? ? SA G 1499 SA U 1508 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog48 hydrog ? ? B G 26 O6 ? ? ? 1_555 B U 35 N3 ? ? SA G 1499 SA U 1508 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog49 hydrog ? ? B G 26 N1 ? ? ? 1_555 B C 36 N3 ? ? SA G 1499 SA C 1509 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? B G 26 N2 ? ? ? 1_555 B C 36 O2 ? ? SA G 1499 SA C 1509 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? B G 26 O6 ? ? ? 1_555 B C 36 N4 ? ? SA G 1499 SA C 1509 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? B C 27 N3 ? ? ? 1_555 B G 34 N1 ? ? SA C 1500 SA G 1507 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? B C 27 N4 ? ? ? 1_555 B G 34 O6 ? ? SA C 1500 SA G 1507 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? B C 27 O2 ? ? ? 1_555 B G 34 N2 ? ? SA C 1500 SA G 1507 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? B C 28 N3 ? ? ? 1_555 B G 33 N1 ? ? SA C 1501 SA G 1506 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? B C 28 N4 ? ? ? 1_555 B G 33 O6 ? ? SA C 1501 SA G 1506 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? B C 28 O2 ? ? ? 1_555 B G 33 N2 ? ? SA C 1501 SA G 1506 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 ASP 78 A . ? ASP 78 U5 PRO 79 A ? PRO 79 U5 1 -8.97 2 TYR 144 A . ? TYR 144 U5 HIS 145 A ? HIS 145 U5 1 -3.65 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 4 ? AA2 ? 2 ? AA3 ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA2 1 2 ? anti-parallel AA3 1 2 ? parallel AA3 2 3 ? parallel AA3 3 4 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 SER A 198 ? TYR A 203 ? SER U5 198 TYR U5 203 AA1 2 ASP A 35 ? THR A 42 ? ASP U5 35 THR U5 42 AA1 3 ILE A 239 ? LYS A 245 ? ILE U5 239 LYS U5 245 AA1 4 LEU A 252 ? PRO A 253 ? LEU U5 252 PRO U5 253 AA2 1 ARG A 55 ? ILE A 57 ? ARG U5 55 ILE U5 57 AA2 2 THR A 187 ? TYR A 189 ? THR U5 187 TYR U5 189 AA3 1 GLU A 99 ? SER A 102 ? GLU U5 99 SER U5 102 AA3 2 LEU A 73 ? THR A 76 ? LEU U5 73 THR U5 76 AA3 3 VAL A 125 ? ASP A 128 ? VAL U5 125 ASP U5 128 AA3 4 TYR A 152 ? ILE A 154 ? TYR U5 152 ILE U5 154 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O VAL A 201 ? O VAL U5 201 N ILE A 36 ? N ILE U5 36 AA1 2 3 N ASN A 41 ? N ASN U5 41 O ILE A 240 ? O ILE U5 240 AA1 3 4 N VAL A 244 ? N VAL U5 244 O LEU A 252 ? O LEU U5 252 AA2 1 2 N ILE A 57 ? N ILE U5 57 O THR A 187 ? O THR U5 187 AA3 1 2 O GLU A 99 ? O GLU U5 99 N LEU A 74 ? N LEU U5 74 AA3 2 3 N LEU A 73 ? N LEU U5 73 O VAL A 126 ? O VAL U5 126 AA3 3 4 N VAL A 125 ? N VAL U5 125 O TYR A 152 ? O TYR U5 152 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O3'" SA C 1481 ? ? P SA C 1482 ? ? OP1 SA C 1482 ? ? 117.49 110.50 6.99 1.10 Y 2 1 N1 SA C 1485 ? ? C2 SA C 1485 ? ? O2 SA C 1485 ? ? 126.25 118.90 7.35 0.60 N 3 1 N3 SA C 1485 ? ? C2 SA C 1485 ? ? O2 SA C 1485 ? ? 115.35 121.90 -6.55 0.70 N 4 1 C2 SA C 1485 ? ? N1 SA C 1485 ? ? "C1'" SA C 1485 ? ? 126.60 118.80 7.80 1.10 N 5 1 N3 SA G 1536 ? ? C4 SA G 1536 ? ? N9 SA G 1536 ? ? 129.71 126.00 3.71 0.60 N 6 1 C8 SA G 1536 ? ? N9 SA G 1536 ? ? "C1'" SA G 1536 ? ? 118.93 127.00 -8.07 1.30 N 7 1 C4 SA G 1536 ? ? N9 SA G 1536 ? ? "C1'" SA G 1536 ? ? 135.59 126.50 9.09 1.30 N 8 1 C6 5A C 251 ? ? N1 5A C 251 ? ? C2 5A C 251 ? ? 117.66 120.30 -2.64 0.40 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LEU U5 134 ? ? -141.46 18.75 2 1 ARG U5 164 ? ? -140.69 12.89 3 1 ASP U5 194 ? ? -126.51 -167.42 4 1 LYS U5 206 ? ? -140.70 -4.47 5 1 GLN U5 231 ? ? 73.66 -7.64 6 1 THR U5 246 ? ? -85.84 -71.61 7 1 SER U5 247 ? ? -140.84 -27.07 8 1 ILE U5 254 ? ? -123.15 -62.23 # _em_3d_fitting.entry_id 5YDT _em_3d_fitting.id 1 _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_protocol ? _em_3d_fitting.ref_space REAL _em_3d_fitting.target_criteria ? _em_3d_fitting.method ? # _em_3d_reconstruction.entry_id 5YDT _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.details ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.num_particles 73543 _em_3d_reconstruction.resolution 4.5 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.symmetry_type POINT _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? # _em_buffer.id 1 _em_buffer.details ? _em_buffer.pH 8.0 _em_buffer.specimen_id 1 _em_buffer.name ? # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.details ? _em_entity_assembly.name '90S small subunit pre-ribosome (Mtr4-depleted, Enp1-TAP)' _em_entity_assembly.source NATURAL _em_entity_assembly.type RIBOSOME _em_entity_assembly.entity_id_list '1, 2, 3, 4' _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? # _em_imaging.id 1 _em_imaging.entry_id 5YDT _em_imaging.accelerating_voltage 300 _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification ? _em_imaging.cryogen ? _em_imaging.details ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_max ? _em_imaging.nominal_defocus_min ? _em_imaging.nominal_magnification ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model ? _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature 277.15 _em_vitrification.cryogen_name ETHANE _em_vitrification.details ? _em_vitrification.humidity 100 _em_vitrification.instrument ? _em_vitrification.entry_id 5YDT _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 5YDT _em_experiment.id 1 _em_experiment.aggregation_state PARTICLE _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.entity_assembly_id 1 # _em_single_particle_entity.entry_id 5YDT _em_single_particle_entity.id 1 _em_single_particle_entity.image_processing_id 1 _em_single_particle_entity.point_symmetry C1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 U5 MET 1 ? A MET 1 2 1 Y 1 U5 VAL 2 ? A VAL 2 3 1 Y 1 U5 GLU 3 ? A GLU 3 4 1 Y 1 U5 SER 4 ? A SER 4 5 1 Y 1 U5 ASN 5 ? A ASN 5 6 1 Y 1 U5 ASP 6 ? A ASP 6 7 1 Y 1 U5 ILE 7 ? A ILE 7 8 1 Y 1 U5 ILE 8 ? A ILE 8 9 1 Y 1 U5 LYS 9 ? A LYS 9 10 1 Y 1 U5 SER 10 ? A SER 10 11 1 Y 1 U5 PHE 257 ? A PHE 257 12 1 Y 1 U5 SER 258 ? A SER 258 13 1 Y 1 U5 GLU 259 ? A GLU 259 14 1 Y 1 U5 ALA 260 ? A ALA 260 15 1 Y 1 U5 ARG 261 ? A ARG 261 16 1 Y 1 U5 GLU 262 ? A GLU 262 17 1 Y 1 U5 ASN 263 ? A ASN 263 18 1 Y 1 U5 GLN 264 ? A GLN 264 19 1 Y 1 U5 LYS 265 ? A LYS 265 20 1 Y 1 U5 ASN 266 ? A ASN 266 21 1 Y 1 U5 GLU 267 ? A GLU 267 22 1 Y 1 U5 ASP 268 ? A ASP 268 23 1 Y 1 U5 LEU 269 ? A LEU 269 24 1 Y 1 U5 SER 270 ? A SER 270 25 1 Y 1 U5 ASP 271 ? A ASP 271 26 1 Y 1 U5 ILE 272 ? A ILE 272 27 1 Y 1 U5 LYS 273 ? A LYS 273 28 1 Y 1 U5 LEU 274 ? A LEU 274 29 1 Y 1 SA U 1489 ? B U 16 30 1 Y 1 SA C 1490 ? B C 17 31 1 Y 1 SA U 1491 ? B U 18 32 1 Y 1 SA A 1492 ? B A 19 33 1 Y 1 SA A 1493 ? B A 20 34 1 Y 1 SA U 1517 ? B U 44 35 1 Y 1 SA C 1518 ? B C 45 36 1 Y 1 SA U 1519 ? B U 46 37 1 Y 1 SA U 1520 ? B U 47 38 1 Y 1 SA G 1521 ? B G 48 39 1 Y 1 SA U 1522 ? B U 49 40 1 Y 1 SA G 1523 ? B G 50 41 1 Y 1 5A C 254 ? C C 8 42 1 Y 1 5A U 255 ? C U 9 43 1 Y 1 5A U 256 ? C U 10 44 1 Y 1 5A G 257 ? C G 11 45 1 Y 1 5A C 258 ? C C 12 46 1 Y 1 5A G 259 ? C G 13 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 ALA N N N N 38 ALA CA C N S 39 ALA C C N N 40 ALA O O N N 41 ALA CB C N N 42 ALA OXT O N N 43 ALA H H N N 44 ALA H2 H N N 45 ALA HA H N N 46 ALA HB1 H N N 47 ALA HB2 H N N 48 ALA HB3 H N N 49 ALA HXT H N N 50 ARG N N N N 51 ARG CA C N S 52 ARG C C N N 53 ARG O O N N 54 ARG CB C N N 55 ARG CG C N N 56 ARG CD C N N 57 ARG NE N N N 58 ARG CZ C N N 59 ARG NH1 N N N 60 ARG NH2 N N N 61 ARG OXT O N N 62 ARG H H N N 63 ARG H2 H N N 64 ARG HA H N N 65 ARG HB2 H N N 66 ARG HB3 H N N 67 ARG HG2 H N N 68 ARG HG3 H N N 69 ARG HD2 H N N 70 ARG HD3 H N N 71 ARG HE H N N 72 ARG HH11 H N N 73 ARG HH12 H N N 74 ARG HH21 H N N 75 ARG HH22 H N N 76 ARG HXT H N N 77 ASN N N N N 78 ASN CA C N S 79 ASN C C N N 80 ASN O O N N 81 ASN CB C N N 82 ASN CG C N N 83 ASN OD1 O N N 84 ASN ND2 N N N 85 ASN OXT O N N 86 ASN H H N N 87 ASN H2 H N N 88 ASN HA H N N 89 ASN HB2 H N N 90 ASN HB3 H N N 91 ASN HD21 H N N 92 ASN HD22 H N N 93 ASN HXT H N N 94 ASP N N N N 95 ASP CA C N S 96 ASP C C N N 97 ASP O O N N 98 ASP CB C N N 99 ASP CG C N N 100 ASP OD1 O N N 101 ASP OD2 O N N 102 ASP OXT O N N 103 ASP H H N N 104 ASP H2 H N N 105 ASP HA H N N 106 ASP HB2 H N N 107 ASP HB3 H N N 108 ASP HD2 H N N 109 ASP HXT H N N 110 C OP3 O N N 111 C P P N N 112 C OP1 O N N 113 C OP2 O N N 114 C "O5'" O N N 115 C "C5'" C N N 116 C "C4'" C N R 117 C "O4'" O N N 118 C "C3'" C N S 119 C "O3'" O N N 120 C "C2'" C N R 121 C "O2'" O N N 122 C "C1'" C N R 123 C N1 N N N 124 C C2 C N N 125 C O2 O N N 126 C N3 N N N 127 C C4 C N N 128 C N4 N N N 129 C C5 C N N 130 C C6 C N N 131 C HOP3 H N N 132 C HOP2 H N N 133 C "H5'" H N N 134 C "H5''" H N N 135 C "H4'" H N N 136 C "H3'" H N N 137 C "HO3'" H N N 138 C "H2'" H N N 139 C "HO2'" H N N 140 C "H1'" H N N 141 C H41 H N N 142 C H42 H N N 143 C H5 H N N 144 C H6 H N N 145 CYS N N N N 146 CYS CA C N R 147 CYS C C N N 148 CYS O O N N 149 CYS CB C N N 150 CYS SG S N N 151 CYS OXT O N N 152 CYS H H N N 153 CYS H2 H N N 154 CYS HA H N N 155 CYS HB2 H N N 156 CYS HB3 H N N 157 CYS HG H N N 158 CYS HXT H N N 159 G OP3 O N N 160 G P P N N 161 G OP1 O N N 162 G OP2 O N N 163 G "O5'" O N N 164 G "C5'" C N N 165 G "C4'" C N R 166 G "O4'" O N N 167 G "C3'" C N S 168 G "O3'" O N N 169 G "C2'" C N R 170 G "O2'" O N N 171 G "C1'" C N R 172 G N9 N Y N 173 G C8 C Y N 174 G N7 N Y N 175 G C5 C Y N 176 G C6 C N N 177 G O6 O N N 178 G N1 N N N 179 G C2 C N N 180 G N2 N N N 181 G N3 N N N 182 G C4 C Y N 183 G HOP3 H N N 184 G HOP2 H N N 185 G "H5'" H N N 186 G "H5''" H N N 187 G "H4'" H N N 188 G "H3'" H N N 189 G "HO3'" H N N 190 G "H2'" H N N 191 G "HO2'" H N N 192 G "H1'" H N N 193 G H8 H N N 194 G H1 H N N 195 G H21 H N N 196 G H22 H N N 197 GLN N N N N 198 GLN CA C N S 199 GLN C C N N 200 GLN O O N N 201 GLN CB C N N 202 GLN CG C N N 203 GLN CD C N N 204 GLN OE1 O N N 205 GLN NE2 N N N 206 GLN OXT O N N 207 GLN H H N N 208 GLN H2 H N N 209 GLN HA H N N 210 GLN HB2 H N N 211 GLN HB3 H N N 212 GLN HG2 H N N 213 GLN HG3 H N N 214 GLN HE21 H N N 215 GLN HE22 H N N 216 GLN HXT H N N 217 GLU N N N N 218 GLU CA C N S 219 GLU C C N N 220 GLU O O N N 221 GLU CB C N N 222 GLU CG C N N 223 GLU CD C N N 224 GLU OE1 O N N 225 GLU OE2 O N N 226 GLU OXT O N N 227 GLU H H N N 228 GLU H2 H N N 229 GLU HA H N N 230 GLU HB2 H N N 231 GLU HB3 H N N 232 GLU HG2 H N N 233 GLU HG3 H N N 234 GLU HE2 H N N 235 GLU HXT H N N 236 GLY N N N N 237 GLY CA C N N 238 GLY C C N N 239 GLY O O N N 240 GLY OXT O N N 241 GLY H H N N 242 GLY H2 H N N 243 GLY HA2 H N N 244 GLY HA3 H N N 245 GLY HXT H N N 246 HIS N N N N 247 HIS CA C N S 248 HIS C C N N 249 HIS O O N N 250 HIS CB C N N 251 HIS CG C Y N 252 HIS ND1 N Y N 253 HIS CD2 C Y N 254 HIS CE1 C Y N 255 HIS NE2 N Y N 256 HIS OXT O N N 257 HIS H H N N 258 HIS H2 H N N 259 HIS HA H N N 260 HIS HB2 H N N 261 HIS HB3 H N N 262 HIS HD1 H N N 263 HIS HD2 H N N 264 HIS HE1 H N N 265 HIS HE2 H N N 266 HIS HXT H N N 267 ILE N N N N 268 ILE CA C N S 269 ILE C C N N 270 ILE O O N N 271 ILE CB C N S 272 ILE CG1 C N N 273 ILE CG2 C N N 274 ILE CD1 C N N 275 ILE OXT O N N 276 ILE H H N N 277 ILE H2 H N N 278 ILE HA H N N 279 ILE HB H N N 280 ILE HG12 H N N 281 ILE HG13 H N N 282 ILE HG21 H N N 283 ILE HG22 H N N 284 ILE HG23 H N N 285 ILE HD11 H N N 286 ILE HD12 H N N 287 ILE HD13 H N N 288 ILE HXT H N N 289 LEU N N N N 290 LEU CA C N S 291 LEU C C N N 292 LEU O O N N 293 LEU CB C N N 294 LEU CG C N N 295 LEU CD1 C N N 296 LEU CD2 C N N 297 LEU OXT O N N 298 LEU H H N N 299 LEU H2 H N N 300 LEU HA H N N 301 LEU HB2 H N N 302 LEU HB3 H N N 303 LEU HG H N N 304 LEU HD11 H N N 305 LEU HD12 H N N 306 LEU HD13 H N N 307 LEU HD21 H N N 308 LEU HD22 H N N 309 LEU HD23 H N N 310 LEU HXT H N N 311 LYS N N N N 312 LYS CA C N S 313 LYS C C N N 314 LYS O O N N 315 LYS CB C N N 316 LYS CG C N N 317 LYS CD C N N 318 LYS CE C N N 319 LYS NZ N N N 320 LYS OXT O N N 321 LYS H H N N 322 LYS H2 H N N 323 LYS HA H N N 324 LYS HB2 H N N 325 LYS HB3 H N N 326 LYS HG2 H N N 327 LYS HG3 H N N 328 LYS HD2 H N N 329 LYS HD3 H N N 330 LYS HE2 H N N 331 LYS HE3 H N N 332 LYS HZ1 H N N 333 LYS HZ2 H N N 334 LYS HZ3 H N N 335 LYS HXT H N N 336 MET N N N N 337 MET CA C N S 338 MET C C N N 339 MET O O N N 340 MET CB C N N 341 MET CG C N N 342 MET SD S N N 343 MET CE C N N 344 MET OXT O N N 345 MET H H N N 346 MET H2 H N N 347 MET HA H N N 348 MET HB2 H N N 349 MET HB3 H N N 350 MET HG2 H N N 351 MET HG3 H N N 352 MET HE1 H N N 353 MET HE2 H N N 354 MET HE3 H N N 355 MET HXT H N N 356 PHE N N N N 357 PHE CA C N S 358 PHE C C N N 359 PHE O O N N 360 PHE CB C N N 361 PHE CG C Y N 362 PHE CD1 C Y N 363 PHE CD2 C Y N 364 PHE CE1 C Y N 365 PHE CE2 C Y N 366 PHE CZ C Y N 367 PHE OXT O N N 368 PHE H H N N 369 PHE H2 H N N 370 PHE HA H N N 371 PHE HB2 H N N 372 PHE HB3 H N N 373 PHE HD1 H N N 374 PHE HD2 H N N 375 PHE HE1 H N N 376 PHE HE2 H N N 377 PHE HZ H N N 378 PHE HXT H N N 379 PRO N N N N 380 PRO CA C N S 381 PRO C C N N 382 PRO O O N N 383 PRO CB C N N 384 PRO CG C N N 385 PRO CD C N N 386 PRO OXT O N N 387 PRO H H N N 388 PRO HA H N N 389 PRO HB2 H N N 390 PRO HB3 H N N 391 PRO HG2 H N N 392 PRO HG3 H N N 393 PRO HD2 H N N 394 PRO HD3 H N N 395 PRO HXT H N N 396 SER N N N N 397 SER CA C N S 398 SER C C N N 399 SER O O N N 400 SER CB C N N 401 SER OG O N N 402 SER OXT O N N 403 SER H H N N 404 SER H2 H N N 405 SER HA H N N 406 SER HB2 H N N 407 SER HB3 H N N 408 SER HG H N N 409 SER HXT H N N 410 THR N N N N 411 THR CA C N S 412 THR C C N N 413 THR O O N N 414 THR CB C N R 415 THR OG1 O N N 416 THR CG2 C N N 417 THR OXT O N N 418 THR H H N N 419 THR H2 H N N 420 THR HA H N N 421 THR HB H N N 422 THR HG1 H N N 423 THR HG21 H N N 424 THR HG22 H N N 425 THR HG23 H N N 426 THR HXT H N N 427 TYR N N N N 428 TYR CA C N S 429 TYR C C N N 430 TYR O O N N 431 TYR CB C N N 432 TYR CG C Y N 433 TYR CD1 C Y N 434 TYR CD2 C Y N 435 TYR CE1 C Y N 436 TYR CE2 C Y N 437 TYR CZ C Y N 438 TYR OH O N N 439 TYR OXT O N N 440 TYR H H N N 441 TYR H2 H N N 442 TYR HA H N N 443 TYR HB2 H N N 444 TYR HB3 H N N 445 TYR HD1 H N N 446 TYR HD2 H N N 447 TYR HE1 H N N 448 TYR HE2 H N N 449 TYR HH H N N 450 TYR HXT H N N 451 U OP3 O N N 452 U P P N N 453 U OP1 O N N 454 U OP2 O N N 455 U "O5'" O N N 456 U "C5'" C N N 457 U "C4'" C N R 458 U "O4'" O N N 459 U "C3'" C N S 460 U "O3'" O N N 461 U "C2'" C N R 462 U "O2'" O N N 463 U "C1'" C N R 464 U N1 N N N 465 U C2 C N N 466 U O2 O N N 467 U N3 N N N 468 U C4 C N N 469 U O4 O N N 470 U C5 C N N 471 U C6 C N N 472 U HOP3 H N N 473 U HOP2 H N N 474 U "H5'" H N N 475 U "H5''" H N N 476 U "H4'" H N N 477 U "H3'" H N N 478 U "HO3'" H N N 479 U "H2'" H N N 480 U "HO2'" H N N 481 U "H1'" H N N 482 U H3 H N N 483 U H5 H N N 484 U H6 H N N 485 VAL N N N N 486 VAL CA C N S 487 VAL C C N N 488 VAL O O N N 489 VAL CB C N N 490 VAL CG1 C N N 491 VAL CG2 C N N 492 VAL OXT O N N 493 VAL H H N N 494 VAL H2 H N N 495 VAL HA H N N 496 VAL HB H N N 497 VAL HG11 H N N 498 VAL HG12 H N N 499 VAL HG13 H N N 500 VAL HG21 H N N 501 VAL HG22 H N N 502 VAL HG23 H N N 503 VAL HXT H N N 504 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 ALA N CA sing N N 40 ALA N H sing N N 41 ALA N H2 sing N N 42 ALA CA C sing N N 43 ALA CA CB sing N N 44 ALA CA HA sing N N 45 ALA C O doub N N 46 ALA C OXT sing N N 47 ALA CB HB1 sing N N 48 ALA CB HB2 sing N N 49 ALA CB HB3 sing N N 50 ALA OXT HXT sing N N 51 ARG N CA sing N N 52 ARG N H sing N N 53 ARG N H2 sing N N 54 ARG CA C sing N N 55 ARG CA CB sing N N 56 ARG CA HA sing N N 57 ARG C O doub N N 58 ARG C OXT sing N N 59 ARG CB CG sing N N 60 ARG CB HB2 sing N N 61 ARG CB HB3 sing N N 62 ARG CG CD sing N N 63 ARG CG HG2 sing N N 64 ARG CG HG3 sing N N 65 ARG CD NE sing N N 66 ARG CD HD2 sing N N 67 ARG CD HD3 sing N N 68 ARG NE CZ sing N N 69 ARG NE HE sing N N 70 ARG CZ NH1 sing N N 71 ARG CZ NH2 doub N N 72 ARG NH1 HH11 sing N N 73 ARG NH1 HH12 sing N N 74 ARG NH2 HH21 sing N N 75 ARG NH2 HH22 sing N N 76 ARG OXT HXT sing N N 77 ASN N CA sing N N 78 ASN N H sing N N 79 ASN N H2 sing N N 80 ASN CA C sing N N 81 ASN CA CB sing N N 82 ASN CA HA sing N N 83 ASN C O doub N N 84 ASN C OXT sing N N 85 ASN CB CG sing N N 86 ASN CB HB2 sing N N 87 ASN CB HB3 sing N N 88 ASN CG OD1 doub N N 89 ASN CG ND2 sing N N 90 ASN ND2 HD21 sing N N 91 ASN ND2 HD22 sing N N 92 ASN OXT HXT sing N N 93 ASP N CA sing N N 94 ASP N H sing N N 95 ASP N H2 sing N N 96 ASP CA C sing N N 97 ASP CA CB sing N N 98 ASP CA HA sing N N 99 ASP C O doub N N 100 ASP C OXT sing N N 101 ASP CB CG sing N N 102 ASP CB HB2 sing N N 103 ASP CB HB3 sing N N 104 ASP CG OD1 doub N N 105 ASP CG OD2 sing N N 106 ASP OD2 HD2 sing N N 107 ASP OXT HXT sing N N 108 C OP3 P sing N N 109 C OP3 HOP3 sing N N 110 C P OP1 doub N N 111 C P OP2 sing N N 112 C P "O5'" sing N N 113 C OP2 HOP2 sing N N 114 C "O5'" "C5'" sing N N 115 C "C5'" "C4'" sing N N 116 C "C5'" "H5'" sing N N 117 C "C5'" "H5''" sing N N 118 C "C4'" "O4'" sing N N 119 C "C4'" "C3'" sing N N 120 C "C4'" "H4'" sing N N 121 C "O4'" "C1'" sing N N 122 C "C3'" "O3'" sing N N 123 C "C3'" "C2'" sing N N 124 C "C3'" "H3'" sing N N 125 C "O3'" "HO3'" sing N N 126 C "C2'" "O2'" sing N N 127 C "C2'" "C1'" sing N N 128 C "C2'" "H2'" sing N N 129 C "O2'" "HO2'" sing N N 130 C "C1'" N1 sing N N 131 C "C1'" "H1'" sing N N 132 C N1 C2 sing N N 133 C N1 C6 sing N N 134 C C2 O2 doub N N 135 C C2 N3 sing N N 136 C N3 C4 doub N N 137 C C4 N4 sing N N 138 C C4 C5 sing N N 139 C N4 H41 sing N N 140 C N4 H42 sing N N 141 C C5 C6 doub N N 142 C C5 H5 sing N N 143 C C6 H6 sing N N 144 CYS N CA sing N N 145 CYS N H sing N N 146 CYS N H2 sing N N 147 CYS CA C sing N N 148 CYS CA CB sing N N 149 CYS CA HA sing N N 150 CYS C O doub N N 151 CYS C OXT sing N N 152 CYS CB SG sing N N 153 CYS CB HB2 sing N N 154 CYS CB HB3 sing N N 155 CYS SG HG sing N N 156 CYS OXT HXT sing N N 157 G OP3 P sing N N 158 G OP3 HOP3 sing N N 159 G P OP1 doub N N 160 G P OP2 sing N N 161 G P "O5'" sing N N 162 G OP2 HOP2 sing N N 163 G "O5'" "C5'" sing N N 164 G "C5'" "C4'" sing N N 165 G "C5'" "H5'" sing N N 166 G "C5'" "H5''" sing N N 167 G "C4'" "O4'" sing N N 168 G "C4'" "C3'" sing N N 169 G "C4'" "H4'" sing N N 170 G "O4'" "C1'" sing N N 171 G "C3'" "O3'" sing N N 172 G "C3'" "C2'" sing N N 173 G "C3'" "H3'" sing N N 174 G "O3'" "HO3'" sing N N 175 G "C2'" "O2'" sing N N 176 G "C2'" "C1'" sing N N 177 G "C2'" "H2'" sing N N 178 G "O2'" "HO2'" sing N N 179 G "C1'" N9 sing N N 180 G "C1'" "H1'" sing N N 181 G N9 C8 sing Y N 182 G N9 C4 sing Y N 183 G C8 N7 doub Y N 184 G C8 H8 sing N N 185 G N7 C5 sing Y N 186 G C5 C6 sing N N 187 G C5 C4 doub Y N 188 G C6 O6 doub N N 189 G C6 N1 sing N N 190 G N1 C2 sing N N 191 G N1 H1 sing N N 192 G C2 N2 sing N N 193 G C2 N3 doub N N 194 G N2 H21 sing N N 195 G N2 H22 sing N N 196 G N3 C4 sing N N 197 GLN N CA sing N N 198 GLN N H sing N N 199 GLN N H2 sing N N 200 GLN CA C sing N N 201 GLN CA CB sing N N 202 GLN CA HA sing N N 203 GLN C O doub N N 204 GLN C OXT sing N N 205 GLN CB CG sing N N 206 GLN CB HB2 sing N N 207 GLN CB HB3 sing N N 208 GLN CG CD sing N N 209 GLN CG HG2 sing N N 210 GLN CG HG3 sing N N 211 GLN CD OE1 doub N N 212 GLN CD NE2 sing N N 213 GLN NE2 HE21 sing N N 214 GLN NE2 HE22 sing N N 215 GLN OXT HXT sing N N 216 GLU N CA sing N N 217 GLU N H sing N N 218 GLU N H2 sing N N 219 GLU CA C sing N N 220 GLU CA CB sing N N 221 GLU CA HA sing N N 222 GLU C O doub N N 223 GLU C OXT sing N N 224 GLU CB CG sing N N 225 GLU CB HB2 sing N N 226 GLU CB HB3 sing N N 227 GLU CG CD sing N N 228 GLU CG HG2 sing N N 229 GLU CG HG3 sing N N 230 GLU CD OE1 doub N N 231 GLU CD OE2 sing N N 232 GLU OE2 HE2 sing N N 233 GLU OXT HXT sing N N 234 GLY N CA sing N N 235 GLY N H sing N N 236 GLY N H2 sing N N 237 GLY CA C sing N N 238 GLY CA HA2 sing N N 239 GLY CA HA3 sing N N 240 GLY C O doub N N 241 GLY C OXT sing N N 242 GLY OXT HXT sing N N 243 HIS N CA sing N N 244 HIS N H sing N N 245 HIS N H2 sing N N 246 HIS CA C sing N N 247 HIS CA CB sing N N 248 HIS CA HA sing N N 249 HIS C O doub N N 250 HIS C OXT sing N N 251 HIS CB CG sing N N 252 HIS CB HB2 sing N N 253 HIS CB HB3 sing N N 254 HIS CG ND1 sing Y N 255 HIS CG CD2 doub Y N 256 HIS ND1 CE1 doub Y N 257 HIS ND1 HD1 sing N N 258 HIS CD2 NE2 sing Y N 259 HIS CD2 HD2 sing N N 260 HIS CE1 NE2 sing Y N 261 HIS CE1 HE1 sing N N 262 HIS NE2 HE2 sing N N 263 HIS OXT HXT sing N N 264 ILE N CA sing N N 265 ILE N H sing N N 266 ILE N H2 sing N N 267 ILE CA C sing N N 268 ILE CA CB sing N N 269 ILE CA HA sing N N 270 ILE C O doub N N 271 ILE C OXT sing N N 272 ILE CB CG1 sing N N 273 ILE CB CG2 sing N N 274 ILE CB HB sing N N 275 ILE CG1 CD1 sing N N 276 ILE CG1 HG12 sing N N 277 ILE CG1 HG13 sing N N 278 ILE CG2 HG21 sing N N 279 ILE CG2 HG22 sing N N 280 ILE CG2 HG23 sing N N 281 ILE CD1 HD11 sing N N 282 ILE CD1 HD12 sing N N 283 ILE CD1 HD13 sing N N 284 ILE OXT HXT sing N N 285 LEU N CA sing N N 286 LEU N H sing N N 287 LEU N H2 sing N N 288 LEU CA C sing N N 289 LEU CA CB sing N N 290 LEU CA HA sing N N 291 LEU C O doub N N 292 LEU C OXT sing N N 293 LEU CB CG sing N N 294 LEU CB HB2 sing N N 295 LEU CB HB3 sing N N 296 LEU CG CD1 sing N N 297 LEU CG CD2 sing N N 298 LEU CG HG sing N N 299 LEU CD1 HD11 sing N N 300 LEU CD1 HD12 sing N N 301 LEU CD1 HD13 sing N N 302 LEU CD2 HD21 sing N N 303 LEU CD2 HD22 sing N N 304 LEU CD2 HD23 sing N N 305 LEU OXT HXT sing N N 306 LYS N CA sing N N 307 LYS N H sing N N 308 LYS N H2 sing N N 309 LYS CA C sing N N 310 LYS CA CB sing N N 311 LYS CA HA sing N N 312 LYS C O doub N N 313 LYS C OXT sing N N 314 LYS CB CG sing N N 315 LYS CB HB2 sing N N 316 LYS CB HB3 sing N N 317 LYS CG CD sing N N 318 LYS CG HG2 sing N N 319 LYS CG HG3 sing N N 320 LYS CD CE sing N N 321 LYS CD HD2 sing N N 322 LYS CD HD3 sing N N 323 LYS CE NZ sing N N 324 LYS CE HE2 sing N N 325 LYS CE HE3 sing N N 326 LYS NZ HZ1 sing N N 327 LYS NZ HZ2 sing N N 328 LYS NZ HZ3 sing N N 329 LYS OXT HXT sing N N 330 MET N CA sing N N 331 MET N H sing N N 332 MET N H2 sing N N 333 MET CA C sing N N 334 MET CA CB sing N N 335 MET CA HA sing N N 336 MET C O doub N N 337 MET C OXT sing N N 338 MET CB CG sing N N 339 MET CB HB2 sing N N 340 MET CB HB3 sing N N 341 MET CG SD sing N N 342 MET CG HG2 sing N N 343 MET CG HG3 sing N N 344 MET SD CE sing N N 345 MET CE HE1 sing N N 346 MET CE HE2 sing N N 347 MET CE HE3 sing N N 348 MET OXT HXT sing N N 349 PHE N CA sing N N 350 PHE N H sing N N 351 PHE N H2 sing N N 352 PHE CA C sing N N 353 PHE CA CB sing N N 354 PHE CA HA sing N N 355 PHE C O doub N N 356 PHE C OXT sing N N 357 PHE CB CG sing N N 358 PHE CB HB2 sing N N 359 PHE CB HB3 sing N N 360 PHE CG CD1 doub Y N 361 PHE CG CD2 sing Y N 362 PHE CD1 CE1 sing Y N 363 PHE CD1 HD1 sing N N 364 PHE CD2 CE2 doub Y N 365 PHE CD2 HD2 sing N N 366 PHE CE1 CZ doub Y N 367 PHE CE1 HE1 sing N N 368 PHE CE2 CZ sing Y N 369 PHE CE2 HE2 sing N N 370 PHE CZ HZ sing N N 371 PHE OXT HXT sing N N 372 PRO N CA sing N N 373 PRO N CD sing N N 374 PRO N H sing N N 375 PRO CA C sing N N 376 PRO CA CB sing N N 377 PRO CA HA sing N N 378 PRO C O doub N N 379 PRO C OXT sing N N 380 PRO CB CG sing N N 381 PRO CB HB2 sing N N 382 PRO CB HB3 sing N N 383 PRO CG CD sing N N 384 PRO CG HG2 sing N N 385 PRO CG HG3 sing N N 386 PRO CD HD2 sing N N 387 PRO CD HD3 sing N N 388 PRO OXT HXT sing N N 389 SER N CA sing N N 390 SER N H sing N N 391 SER N H2 sing N N 392 SER CA C sing N N 393 SER CA CB sing N N 394 SER CA HA sing N N 395 SER C O doub N N 396 SER C OXT sing N N 397 SER CB OG sing N N 398 SER CB HB2 sing N N 399 SER CB HB3 sing N N 400 SER OG HG sing N N 401 SER OXT HXT sing N N 402 THR N CA sing N N 403 THR N H sing N N 404 THR N H2 sing N N 405 THR CA C sing N N 406 THR CA CB sing N N 407 THR CA HA sing N N 408 THR C O doub N N 409 THR C OXT sing N N 410 THR CB OG1 sing N N 411 THR CB CG2 sing N N 412 THR CB HB sing N N 413 THR OG1 HG1 sing N N 414 THR CG2 HG21 sing N N 415 THR CG2 HG22 sing N N 416 THR CG2 HG23 sing N N 417 THR OXT HXT sing N N 418 TYR N CA sing N N 419 TYR N H sing N N 420 TYR N H2 sing N N 421 TYR CA C sing N N 422 TYR CA CB sing N N 423 TYR CA HA sing N N 424 TYR C O doub N N 425 TYR C OXT sing N N 426 TYR CB CG sing N N 427 TYR CB HB2 sing N N 428 TYR CB HB3 sing N N 429 TYR CG CD1 doub Y N 430 TYR CG CD2 sing Y N 431 TYR CD1 CE1 sing Y N 432 TYR CD1 HD1 sing N N 433 TYR CD2 CE2 doub Y N 434 TYR CD2 HD2 sing N N 435 TYR CE1 CZ doub Y N 436 TYR CE1 HE1 sing N N 437 TYR CE2 CZ sing Y N 438 TYR CE2 HE2 sing N N 439 TYR CZ OH sing N N 440 TYR OH HH sing N N 441 TYR OXT HXT sing N N 442 U OP3 P sing N N 443 U OP3 HOP3 sing N N 444 U P OP1 doub N N 445 U P OP2 sing N N 446 U P "O5'" sing N N 447 U OP2 HOP2 sing N N 448 U "O5'" "C5'" sing N N 449 U "C5'" "C4'" sing N N 450 U "C5'" "H5'" sing N N 451 U "C5'" "H5''" sing N N 452 U "C4'" "O4'" sing N N 453 U "C4'" "C3'" sing N N 454 U "C4'" "H4'" sing N N 455 U "O4'" "C1'" sing N N 456 U "C3'" "O3'" sing N N 457 U "C3'" "C2'" sing N N 458 U "C3'" "H3'" sing N N 459 U "O3'" "HO3'" sing N N 460 U "C2'" "O2'" sing N N 461 U "C2'" "C1'" sing N N 462 U "C2'" "H2'" sing N N 463 U "O2'" "HO2'" sing N N 464 U "C1'" N1 sing N N 465 U "C1'" "H1'" sing N N 466 U N1 C2 sing N N 467 U N1 C6 sing N N 468 U C2 O2 doub N N 469 U C2 N3 sing N N 470 U N3 C4 sing N N 471 U N3 H3 sing N N 472 U C4 O4 doub N N 473 U C4 C5 sing N N 474 U C5 C6 doub N N 475 U C5 H5 sing N N 476 U C6 H6 sing N N 477 VAL N CA sing N N 478 VAL N H sing N N 479 VAL N H2 sing N N 480 VAL CA C sing N N 481 VAL CA CB sing N N 482 VAL CA HA sing N N 483 VAL C O doub N N 484 VAL C OXT sing N N 485 VAL CB CG1 sing N N 486 VAL CB CG2 sing N N 487 VAL CB HB sing N N 488 VAL CG1 HG11 sing N N 489 VAL CG1 HG12 sing N N 490 VAL CG1 HG13 sing N N 491 VAL CG2 HG21 sing N N 492 VAL CG2 HG22 sing N N 493 VAL CG2 HG23 sing N N 494 VAL OXT HXT sing N N 495 # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type 'PHASE FLIPPING ONLY' _em_ctf_correction.details ? # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.units ? _em_entity_assembly_molwt.value ? # _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.ncbi_tax_id 559292 _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organism 'Saccharomyces cerevisiae S288c' _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 40 _em_image_recording.average_exposure_time ? _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'FEI FALCON III (4k x 4k)' _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'PARTICLE SELECTION' ? ? ? 1 ? ? 2 'IMAGE ACQUISITION' ? ? ? ? ? 1 3 MASKING ? ? ? ? ? ? 4 'CTF CORRECTION' ? ? ? 1 ? ? 5 'LAYERLINE INDEXING' ? ? ? ? ? ? 6 'DIFFRACTION INDEXING' ? ? ? ? ? ? 7 'MODEL FITTING' ? ? ? ? 1 ? 8 OTHER ? ? ? ? ? ? 9 'INITIAL EULER ASSIGNMENT' ? ? ? 1 ? ? 10 'FINAL EULER ASSIGNMENT' ? ? ? 1 ? ? 11 CLASSIFICATION ? ? ? 1 ? ? 12 RECONSTRUCTION ? RELION 1.4 1 ? ? 13 'MODEL REFINEMENT' ? ? ? ? 1 ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 5YDT 'double helix' 5YDT 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B G 1 1_555 B C 60 1_555 -0.184 -0.243 0.227 -3.115 12.869 1.264 1 SA_G1474:C1533_SA SA 1474 ? SA 1533 ? 19 1 1 B A 2 1_555 B U 59 1_555 0.029 -0.277 -0.166 3.186 8.541 0.056 2 SA_A1475:U1532_SA SA 1475 ? SA 1532 ? 20 1 1 B C 3 1_555 B G 58 1_555 0.205 -0.174 -0.465 5.151 -0.520 1.394 3 SA_C1476:G1531_SA SA 1476 ? SA 1531 ? 19 1 1 B G 4 1_555 B C 57 1_555 -0.189 -0.164 -0.282 -10.611 -10.129 3.921 4 SA_G1477:C1530_SA SA 1477 ? SA 1530 ? 19 1 1 B G 5 1_555 B C 56 1_555 -0.132 -0.124 -0.703 -10.242 -3.187 2.309 5 SA_G1478:C1529_SA SA 1478 ? SA 1529 ? 19 1 1 B A 6 1_555 B U 55 1_555 0.263 -0.209 -0.902 -4.061 -1.476 0.820 6 SA_A1479:U1528_SA SA 1479 ? SA 1528 ? 20 1 1 B G 7 1_555 B C 54 1_555 0.000 -0.132 -0.714 -16.673 10.449 -2.171 7 SA_G1480:C1527_SA SA 1480 ? SA 1527 ? 19 1 1 B C 8 1_555 B A 53 1_555 4.857 -0.893 0.289 -2.346 32.379 -16.944 8 SA_C1481:A1526_SA SA 1481 ? SA 1526 ? ? ? 1 B C 9 1_555 B A 52 1_555 2.304 0.441 0.107 13.411 -0.162 -93.505 9 SA_C1482:A1525_SA SA 1482 ? SA 1525 ? 25 4 1 B C 21 1_555 B U 41 1_555 1.356 -0.884 0.870 -14.086 9.071 35.779 10 SA_C1494:U1514_SA SA 1494 ? SA 1514 ? ? 1 1 B C 22 1_555 B G 39 1_555 0.052 -0.353 -1.242 12.173 5.344 -8.180 11 SA_C1495:G1512_SA SA 1495 ? SA 1512 ? 19 1 1 B U 23 1_555 B U 38 1_555 -0.505 -1.947 -0.306 6.407 -61.116 1.619 12 SA_U1496:U1511_SA SA 1496 ? SA 1511 ? 12 1 1 B U 24 1_555 B U 37 1_555 -1.026 -1.239 -0.483 -26.213 -15.667 0.492 13 SA_U1497:U1510_SA SA 1497 ? SA 1510 ? ? ? 1 B G 25 1_555 B C 36 1_555 -0.006 -0.454 -1.472 -14.160 0.515 -2.040 14 SA_G1498:C1509_SA SA 1498 ? SA 1509 ? 19 1 1 B G 26 1_555 B U 35 1_555 -1.862 -0.518 -1.312 -12.448 -3.517 -1.871 15 SA_G1499:U1508_SA SA 1499 ? SA 1508 ? 28 1 1 B C 27 1_555 B G 34 1_555 0.124 -0.254 -0.722 -4.535 2.744 -2.738 16 SA_C1500:G1507_SA SA 1500 ? SA 1507 ? 19 1 1 B C 28 1_555 B G 33 1_555 0.171 -0.136 -0.181 2.359 6.239 0.590 17 SA_C1501:G1506_SA SA 1501 ? SA 1506 ? 19 1 1 C U 1 1_555 C A 19 1_555 0.228 -0.645 1.429 22.014 36.234 17.472 18 5A_U247:A265_5A 5A 247 ? 5A 265 ? 20 1 1 C G 2 1_555 C C 18 1_555 -0.149 -0.278 -1.043 -7.485 -1.287 1.243 19 5A_G248:C264_5A 5A 248 ? 5A 264 ? 19 1 1 C G 3 1_555 C C 17 1_555 -0.182 -0.175 0.260 -4.845 1.602 -2.005 20 5A_G249:C263_5A 5A 249 ? 5A 263 ? 19 1 1 C G 4 1_555 C U 16 1_555 -0.892 -0.660 -0.718 16.597 0.020 -4.629 21 5A_G250:U262_5A 5A 250 ? 5A 262 ? 28 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B G 1 1_555 B C 60 1_555 B A 2 1_555 B U 59 1_555 0.507 -2.156 3.085 3.310 7.714 31.310 -5.055 -0.398 2.535 13.981 -5.999 32.389 1 SASA_G1474A1475:U1532C1533_SASA SA 1474 ? SA 1533 ? SA 1475 ? SA 1532 ? 1 B A 2 1_555 B U 59 1_555 B C 3 1_555 B G 58 1_555 0.817 -1.829 3.232 3.854 7.671 36.378 -3.814 -0.795 2.870 12.081 -6.069 37.344 2 SASA_A1475C1476:G1531U1532_SASA SA 1475 ? SA 1532 ? SA 1476 ? SA 1531 ? 1 B C 3 1_555 B G 58 1_555 B G 4 1_555 B C 57 1_555 0.284 -1.333 3.424 0.219 27.605 28.339 -4.931 -0.399 1.575 45.102 -0.357 39.364 3 SASA_C1476G1477:C1530G1531_SASA SA 1476 ? SA 1531 ? SA 1477 ? SA 1530 ? 1 B G 4 1_555 B C 57 1_555 B G 5 1_555 B C 56 1_555 -0.178 -1.473 3.544 -0.450 -0.398 29.912 -2.763 0.244 3.565 -0.770 0.871 29.918 4 SASA_G1477G1478:C1529C1530_SASA SA 1477 ? SA 1530 ? SA 1478 ? SA 1529 ? 1 B G 5 1_555 B C 56 1_555 B A 6 1_555 B U 55 1_555 -0.430 -0.980 3.294 -1.524 4.238 33.247 -2.389 0.498 3.165 7.364 2.648 33.542 5 SASA_G1478A1479:U1528C1529_SASA SA 1478 ? SA 1529 ? SA 1479 ? SA 1528 ? 1 B A 6 1_555 B U 55 1_555 B G 7 1_555 B C 54 1_555 0.211 -2.007 3.552 -0.812 8.933 33.179 -4.810 -0.486 2.923 15.299 1.390 34.337 6 SASA_A1479G1480:C1527U1528_SASA SA 1479 ? SA 1528 ? SA 1480 ? SA 1527 ? 1 B G 7 1_555 B C 54 1_555 B C 8 1_555 B A 53 1_555 -1.065 -1.359 3.022 1.613 9.411 49.226 -2.206 1.361 2.702 11.176 -1.916 50.087 7 SASA_G1480C1481:A1526C1527_SASA SA 1480 ? SA 1527 ? SA 1481 ? SA 1526 ? 1 B C 8 1_555 B A 53 1_555 B C 9 1_555 B A 52 1_555 -4.416 -0.739 3.098 3.595 -9.442 21.584 0.967 11.756 2.443 -23.618 -8.992 23.806 8 SASA_C1481C1482:A1525A1526_SASA SA 1481 ? SA 1526 ? SA 1482 ? SA 1525 ? 1 B C 21 1_555 B U 41 1_555 B C 22 1_555 B G 39 1_555 -0.714 -1.588 4.697 -2.680 5.895 34.543 -3.869 0.620 4.416 9.821 4.465 35.127 9 SASA_C1494C1495:G1512U1514_SASA SA 1494 ? SA 1514 ? SA 1495 ? SA 1512 ? 1 B C 22 1_555 B G 39 1_555 B U 23 1_555 B U 38 1_555 0.922 -1.970 3.939 5.288 25.410 26.160 -6.627 -0.736 1.623 44.564 -9.275 36.691 10 SASA_C1495U1496:U1511G1512_SASA SA 1495 ? SA 1512 ? SA 1496 ? SA 1511 ? 1 B U 23 1_555 B U 38 1_555 B U 24 1_555 B U 37 1_555 -1.441 -1.308 4.303 -18.735 19.731 33.541 -4.419 -0.531 3.419 28.998 27.534 42.941 11 SASA_U1496U1497:U1510U1511_SASA SA 1496 ? SA 1511 ? SA 1497 ? SA 1510 ? 1 B U 24 1_555 B U 37 1_555 B G 25 1_555 B C 36 1_555 -0.429 -0.948 3.512 -4.140 4.347 34.385 -2.282 0.048 3.397 7.285 6.938 34.890 12 SASA_U1497G1498:C1509U1510_SASA SA 1497 ? SA 1510 ? SA 1498 ? SA 1509 ? 1 B G 25 1_555 B C 36 1_555 B G 26 1_555 B U 35 1_555 -1.355 -1.779 3.712 -9.021 0.865 15.094 -6.461 -2.300 3.792 2.969 30.964 17.592 13 SASA_G1498G1499:U1508C1509_SASA SA 1498 ? SA 1509 ? SA 1499 ? SA 1508 ? 1 B G 26 1_555 B U 35 1_555 B C 27 1_555 B G 34 1_555 -0.446 -1.310 3.074 -4.942 4.046 42.467 -2.163 0.154 2.974 5.549 6.776 42.922 14 SASA_G1499C1500:G1507U1508_SASA SA 1499 ? SA 1508 ? SA 1500 ? SA 1507 ? 1 B C 27 1_555 B G 34 1_555 B C 28 1_555 B G 33 1_555 0.101 -1.633 3.071 -3.598 9.057 28.707 -4.707 -0.821 2.425 17.636 7.007 30.283 15 SASA_C1500C1501:G1506G1507_SASA SA 1500 ? SA 1507 ? SA 1501 ? SA 1506 ? 1 C U 1 1_555 C A 19 1_555 C G 2 1_555 C C 18 1_555 -0.180 -2.080 3.588 27.726 24.176 37.113 -3.924 1.975 1.586 30.401 -34.865 51.794 16 5A5A_U247G248:C264A265_5A5A 5A 247 ? 5A 265 ? 5A 248 ? 5A 264 ? 1 C G 2 1_555 C C 18 1_555 C G 3 1_555 C C 17 1_555 -0.290 -1.551 3.384 -6.200 2.808 29.657 -3.532 -0.716 3.220 5.396 11.915 30.411 17 5A5A_G248G249:C263C264_5A5A 5A 248 ? 5A 264 ? 5A 249 ? 5A 263 ? 1 C G 3 1_555 C C 17 1_555 C G 4 1_555 C U 16 1_555 -0.177 -1.816 2.832 9.643 8.635 32.357 -4.080 1.461 2.153 14.778 -16.503 34.785 18 5A5A_G249G250:U262C263_5A5A 5A 249 ? 5A 263 ? 5A 250 ? 5A 262 ? # _pdbx_audit_support.funding_organization 'National Natural Science Foundation of China' _pdbx_audit_support.country China _pdbx_audit_support.grant_number 91540201 _pdbx_audit_support.ordinal 1 # _atom_sites.entry_id 5YDT _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_