HEADER STRUCTURAL PROTEIN 16-SEP-17 5YEE TITLE CRYSTAL STRUCTURE OF LOKIPROFILIN1/RABBIT ACTIN COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACTIN, ALPHA SKELETAL MUSCLE; COMPND 3 CHAIN: B; COMPND 4 SYNONYM: ALPHA-ACTIN-1; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 7 CHAIN: A; COMPND 8 SYNONYM: LOKIPROFILIN1; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORYCTOLAGUS CUNICULUS; SOURCE 3 ORGANISM_TAXID: 9986; SOURCE 4 MOL_ID: 2; SOURCE 5 ORGANISM_SCIENTIFIC: LOKIARCHAEUM SP. GC14_75; SOURCE 6 ORGANISM_TAXID: 1538547; SOURCE 7 GENE: LOKIARCH_47830; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ACTIN, ARCHAEA, LOKIARCHAEA, STRUCTURAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.C.ROBINSON,C.AKIL REVDAT 5 22-NOV-23 5YEE 1 REMARK REVDAT 4 31-OCT-18 5YEE 1 JRNL REVDAT 3 17-OCT-18 5YEE 1 COMPND JRNL REVDAT 2 10-OCT-18 5YEE 1 COMPND JRNL REVDAT 1 19-SEP-18 5YEE 0 JRNL AUTH C.AKIL,R.C.ROBINSON JRNL TITL GENOMES OF ASGARD ARCHAEA ENCODE PROFILINS THAT REGULATE JRNL TITL 2 ACTIN. JRNL REF NATURE V. 562 439 2018 JRNL REFN ESSN 1476-4687 JRNL PMID 30283132 JRNL DOI 10.1038/S41586-018-0548-6 REMARK 2 REMARK 2 RESOLUTION. 1.81 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.81 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 63.10 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 49614 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2561 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.81 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3452 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.53 REMARK 3 BIN R VALUE (WORKING SET) : 0.2850 REMARK 3 BIN FREE R VALUE SET COUNT : 163 REMARK 3 BIN FREE R VALUE : 0.3130 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3837 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 59 REMARK 3 SOLVENT ATOMS : 596 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.49 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.06000 REMARK 3 B22 (A**2) : -0.05000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.01000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.136 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.140 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.111 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.669 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.930 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4171 ; 0.018 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3989 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5707 ; 1.943 ; 1.986 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9242 ; 1.093 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 551 ; 6.699 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 175 ;34.505 ;24.629 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 730 ;15.055 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;15.090 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 650 ; 0.119 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4737 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 906 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2061 ; 2.519 ; 2.824 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2060 ; 2.519 ; 2.823 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2592 ; 3.420 ; 4.214 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2593 ; 3.419 ; 4.214 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2110 ; 3.280 ; 3.121 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2110 ; 3.280 ; 3.120 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3092 ; 4.808 ; 4.547 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5237 ; 6.673 ;24.252 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4936 ; 6.551 ;23.412 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5YEE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-SEP-17. REMARK 100 THE DEPOSITION ID IS D_1300005142. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUL-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49614 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.810 REMARK 200 RESOLUTION RANGE LOW (A) : 63.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.81 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 78.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.69200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3HBT, 5YED REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM HEPES, PH 7.0, 20 % W/V REMARK 280 POLYETHYLENE GLYCOL 6,000, 200 MM NACL, 10 MM ATP DISODIUM SALT, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 63.10450 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B -1 REMARK 465 CYS B 0 REMARK 465 ASP B 1 REMARK 465 GLU B 2 REMARK 465 ASP B 3 REMARK 465 GLU B 4 REMARK 465 GLN B 41 REMARK 465 GLY B 42 REMARK 465 VAL B 43 REMARK 465 MET B 44 REMARK 465 VAL B 45 REMARK 465 GLY B 46 REMARK 465 MET B 47 REMARK 465 GLY B 48 REMARK 465 GLN B 49 REMARK 465 LYS B 50 REMARK 465 ASP B 51 REMARK 465 LEU A 57 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS B 40 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 113 CG CD CE NZ REMARK 470 GLU B 270 CG CD OE1 OE2 REMARK 470 GLU B 334 CG CD OE1 OE2 REMARK 470 GLU B 364 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 610 O HOH B 703 1.42 REMARK 500 O HOH B 688 O HOH B 695 1.50 REMARK 500 O HOH A 265 O HOH A 323 1.51 REMARK 500 O HOH B 648 O HOH B 816 1.57 REMARK 500 O HOH A 298 O HOH A 314 1.79 REMARK 500 O HOH B 542 O HOH B 546 1.89 REMARK 500 O HOH B 693 O HOH B 694 1.94 REMARK 500 O HOH B 711 O HOH B 800 1.95 REMARK 500 O HOH A 311 O HOH A 348 1.97 REMARK 500 O HOH B 502 O HOH B 774 2.00 REMARK 500 O HOH A 294 O HOH A 356 2.04 REMARK 500 O HOH B 815 O HOH B 834 2.09 REMARK 500 O HOH B 693 O HOH B 800 2.16 REMARK 500 O HOH B 599 O HOH B 847 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASN B 12 CG ASN B 12 ND2 0.158 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 147 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR B 6 107.44 64.73 REMARK 500 ALA B 181 -150.96 -146.93 REMARK 500 VAL B 201 -42.10 -138.40 REMARK 500 VAL B 201 -36.87 -141.11 REMARK 500 ASN B 296 58.30 -141.67 REMARK 500 PRO A 99 -174.75 -63.67 REMARK 500 ASN A 111 118.64 -34.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU A 133 ILE A 134 60.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 81 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 911 DISTANCE = 5.86 ANGSTROMS REMARK 525 HOH B 912 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH B 913 DISTANCE = 5.94 ANGSTROMS REMARK 525 HOH B 914 DISTANCE = 6.10 ANGSTROMS REMARK 525 HOH B 915 DISTANCE = 6.85 ANGSTROMS REMARK 525 HOH B 916 DISTANCE = 6.88 ANGSTROMS REMARK 525 HOH B 917 DISTANCE = 7.11 ANGSTROMS REMARK 525 HOH B 918 DISTANCE = 7.49 ANGSTROMS REMARK 525 HOH B 919 DISTANCE = 7.60 ANGSTROMS REMARK 525 HOH B 920 DISTANCE = 8.15 ANGSTROMS REMARK 525 HOH A 376 DISTANCE = 6.05 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ATP B 402 O3G REMARK 620 2 ATP B 402 O2B 81.6 REMARK 620 3 HOH B 557 O 95.6 176.4 REMARK 620 4 HOH B 676 O 81.6 89.0 88.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LAB B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ATP B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 403 DBREF 5YEE B -1 375 UNP P68135 ACTS_RABIT 1 377 DBREF1 5YEE A 1 134 UNP A0A0F8V8L2_9ARCH DBREF2 5YEE A A0A0F8V8L2 1 134 SEQADV 5YEE GLY A -1 UNP A0A0F8V8L EXPRESSION TAG SEQADV 5YEE PRO A 0 UNP A0A0F8V8L EXPRESSION TAG SEQRES 1 B 377 MET CYS ASP GLU ASP GLU THR THR ALA LEU VAL CYS ASP SEQRES 2 B 377 ASN GLY SER GLY LEU VAL LYS ALA GLY PHE ALA GLY ASP SEQRES 3 B 377 ASP ALA PRO ARG ALA VAL PHE PRO SER ILE VAL GLY ARG SEQRES 4 B 377 PRO ARG HIS GLN GLY VAL MET VAL GLY MET GLY GLN LYS SEQRES 5 B 377 ASP SER TYR VAL GLY ASP GLU ALA GLN SER LYS ARG GLY SEQRES 6 B 377 ILE LEU THR LEU LYS TYR PRO ILE GLU HIS GLY ILE ILE SEQRES 7 B 377 THR ASN TRP ASP ASP MET GLU LYS ILE TRP HIS HIS THR SEQRES 8 B 377 PHE TYR ASN GLU LEU ARG VAL ALA PRO GLU GLU HIS PRO SEQRES 9 B 377 THR LEU LEU THR GLU ALA PRO LEU ASN PRO LYS ALA ASN SEQRES 10 B 377 ARG GLU LYS MET THR GLN ILE MET PHE GLU THR PHE ASN SEQRES 11 B 377 VAL PRO ALA MET TYR VAL ALA ILE GLN ALA VAL LEU SER SEQRES 12 B 377 LEU TYR ALA SER GLY ARG THR THR GLY ILE VAL LEU ASP SEQRES 13 B 377 SER GLY ASP GLY VAL THR HIS ASN VAL PRO ILE TYR GLU SEQRES 14 B 377 GLY TYR ALA LEU PRO HIS ALA ILE MET ARG LEU ASP LEU SEQRES 15 B 377 ALA GLY ARG ASP LEU THR ASP TYR LEU MET LYS ILE LEU SEQRES 16 B 377 THR GLU ARG GLY TYR SER PHE VAL THR THR ALA GLU ARG SEQRES 17 B 377 GLU ILE VAL ARG ASP ILE LYS GLU LYS LEU CYS TYR VAL SEQRES 18 B 377 ALA LEU ASP PHE GLU ASN GLU MET ALA THR ALA ALA SER SEQRES 19 B 377 SER SER SER LEU GLU LYS SER TYR GLU LEU PRO ASP GLY SEQRES 20 B 377 GLN VAL ILE THR ILE GLY ASN GLU ARG PHE ARG CYS PRO SEQRES 21 B 377 GLU THR LEU PHE GLN PRO SER PHE ILE GLY MET GLU SER SEQRES 22 B 377 ALA GLY ILE HIS GLU THR THR TYR ASN SER ILE MET LYS SEQRES 23 B 377 CYS ASP ILE ASP ILE ARG LYS ASP LEU TYR ALA ASN ASN SEQRES 24 B 377 VAL MET SER GLY GLY THR THR MET TYR PRO GLY ILE ALA SEQRES 25 B 377 ASP ARG MET GLN LYS GLU ILE THR ALA LEU ALA PRO SER SEQRES 26 B 377 THR MET LYS ILE LYS ILE ILE ALA PRO PRO GLU ARG LYS SEQRES 27 B 377 TYR SER VAL TRP ILE GLY GLY SER ILE LEU ALA SER LEU SEQRES 28 B 377 SER THR PHE GLN GLN MET TRP ILE THR LYS GLN GLU TYR SEQRES 29 B 377 ASP GLU ALA GLY PRO SER ILE VAL HIS ARG LYS CYS PHE SEQRES 1 A 136 GLY PRO MET SER GLU LYS ILE GLU GLY ILE ILE ASP ASP SEQRES 2 A 136 LEU LEU ASN LEU GLU GLU ASN ALA HIS GLY ILE ALA ILE SEQRES 3 A 136 ILE GLY LYS ASP GLY LYS ILE ILE THR GLN THR GLU ASN SEQRES 4 A 136 TRP ASN ILE SER ASN ASP LEU ASP LYS LEU ASN GLU PHE SEQRES 5 A 136 LEU ASN GLU LYS LEU ALA LEU GLY LYS LYS GLY ILE THR SEQRES 6 A 136 SER LEU SER ILE GLN GLY ILE LYS TYR MET ILE VAL GLU SEQRES 7 A 136 ASN THR GLU GLU ARG LYS ILE GLY THR ASN ILE THR GLY SEQRES 8 A 136 LYS GLY HIS VAL VAL ILE CYS PRO ILE PRO ILE GLY GLY SEQRES 9 A 136 THR GLY ALA LEU ILE THR TYR VAL ASN PRO ARG ALA GLY SEQRES 10 A 136 PRO ARG ASP VAL LEU PHE ASN VAL GLN GLU TYR ALA LYS SEQRES 11 A 136 LYS LEU THR ASP LEU ILE HET LAB B 401 27 HET ATP B 402 31 HET MG B 403 1 HETNAM LAB LATRUNCULIN B HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 3 LAB C20 H29 N O5 S FORMUL 4 ATP C10 H16 N5 O13 P3 FORMUL 5 MG MG 2+ FORMUL 6 HOH *596(H2 O) HELIX 1 AA1 GLY B 55 LYS B 61 1 7 HELIX 2 AA2 ASN B 78 ASN B 92 1 15 HELIX 3 AA3 ALA B 97 HIS B 101 5 5 HELIX 4 AA4 PRO B 112 THR B 126 1 15 HELIX 5 AA5 GLN B 137 SER B 145 1 9 HELIX 6 AA6 ALA B 181 GLY B 197 1 17 HELIX 7 AA7 THR B 202 CYS B 217 1 16 HELIX 8 AA8 ASP B 222 SER B 233 1 12 HELIX 9 AA9 ASN B 252 GLN B 263 1 12 HELIX 10 AB1 PRO B 264 GLY B 268 5 5 HELIX 11 AB2 GLY B 273 LYS B 284 1 12 HELIX 12 AB3 CYS B 285 ASP B 288 5 4 HELIX 13 AB4 ILE B 289 ALA B 295 1 7 HELIX 14 AB5 GLY B 301 MET B 305 5 5 HELIX 15 AB6 GLY B 308 ALA B 321 1 14 HELIX 16 AB7 TYR B 337 SER B 348 1 12 HELIX 17 AB8 LEU B 349 GLN B 353 5 5 HELIX 18 AB9 LYS B 359 GLY B 366 1 8 HELIX 19 AC1 SER B 368 CYS B 374 1 7 HELIX 20 AC2 SER A 2 GLU A 16 1 15 HELIX 21 AC3 ILE A 40 ASN A 42 5 3 HELIX 22 AC4 ASP A 43 ASN A 52 1 10 HELIX 23 AC5 GLY A 115 ASP A 118 5 4 HELIX 24 AC6 VAL A 119 LEU A 130 1 12 SHEET 1 AA1 6 ALA B 29 PRO B 32 0 SHEET 2 AA1 6 LEU B 16 PHE B 21 -1 N VAL B 17 O PHE B 31 SHEET 3 AA1 6 LEU B 8 ASN B 12 -1 N ASP B 11 O LYS B 18 SHEET 4 AA1 6 THR B 103 GLU B 107 1 O LEU B 104 N LEU B 8 SHEET 5 AA1 6 ALA B 131 ILE B 136 1 O TYR B 133 N LEU B 105 SHEET 6 AA1 6 ILE B 357 THR B 358 -1 O ILE B 357 N MET B 132 SHEET 1 AA2 3 TYR B 53 VAL B 54 0 SHEET 2 AA2 3 VAL B 35 PRO B 38 -1 N GLY B 36 O TYR B 53 SHEET 3 AA2 3 LEU B 65 LYS B 68 -1 O THR B 66 N ARG B 37 SHEET 1 AA3 2 ILE B 71 GLU B 72 0 SHEET 2 AA3 2 ILE B 75 ILE B 76 -1 O ILE B 75 N GLU B 72 SHEET 1 AA4 3 TYR B 169 ALA B 170 0 SHEET 2 AA4 3 THR B 160 TYR B 166 -1 N TYR B 166 O TYR B 169 SHEET 3 AA4 3 MET B 176 LEU B 178 -1 O LEU B 178 N THR B 160 SHEET 1 AA5 5 TYR B 169 ALA B 170 0 SHEET 2 AA5 5 THR B 160 TYR B 166 -1 N TYR B 166 O TYR B 169 SHEET 3 AA5 5 GLY B 150 SER B 155 -1 N ASP B 154 O HIS B 161 SHEET 4 AA5 5 ASN B 297 SER B 300 1 O SER B 300 N SER B 155 SHEET 5 AA5 5 ILE B 329 ILE B 330 1 O ILE B 330 N ASN B 297 SHEET 1 AA6 2 LYS B 238 GLU B 241 0 SHEET 2 AA6 2 VAL B 247 ILE B 250 -1 O ILE B 248 N TYR B 240 SHEET 1 AA7 7 ILE A 31 GLN A 34 0 SHEET 2 AA7 7 ALA A 19 ILE A 25 -1 N ILE A 24 O THR A 33 SHEET 3 AA7 7 GLY A 104 VAL A 110 -1 O TYR A 109 N GLY A 21 SHEET 4 AA7 7 HIS A 92 ILE A 98 -1 N VAL A 94 O THR A 108 SHEET 5 AA7 7 LYS A 82 THR A 85 -1 N LYS A 82 O ILE A 95 SHEET 6 AA7 7 ILE A 70 ASN A 77 -1 N MET A 73 O THR A 85 SHEET 7 AA7 7 SER A 64 ILE A 67 -1 N LEU A 65 O TYR A 72 LINK O3G ATP B 402 MG MG B 403 1555 1555 2.31 LINK O2B ATP B 402 MG MG B 403 1555 1555 2.32 LINK MG MG B 403 O HOH B 557 1555 1555 2.37 LINK MG MG B 403 O HOH B 676 1555 1555 2.24 CISPEP 1 ILE A 98 PRO A 99 0 -15.83 SITE 1 AC1 12 GLY B 15 LEU B 16 GLN B 59 TYR B 69 SITE 2 AC1 12 ASP B 157 ARG B 183 THR B 186 ARG B 206 SITE 3 AC1 12 GLU B 207 ARG B 210 LYS B 213 HOH B 627 SITE 1 AC2 27 GLY B 13 SER B 14 GLY B 15 LEU B 16 SITE 2 AC2 27 LYS B 18 GLY B 156 ASP B 157 GLY B 158 SITE 3 AC2 27 VAL B 159 GLY B 182 ARG B 210 LYS B 213 SITE 4 AC2 27 GLU B 214 GLY B 301 GLY B 302 THR B 303 SITE 5 AC2 27 MET B 305 TYR B 306 LYS B 336 MG B 403 SITE 6 AC2 27 HOH B 527 HOH B 547 HOH B 567 HOH B 584 SITE 7 AC2 27 HOH B 672 HOH B 676 HOH B 768 SITE 1 AC3 3 ATP B 402 HOH B 557 HOH B 676 CRYST1 43.312 126.209 53.862 90.00 97.89 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023088 0.000000 0.003200 0.00000 SCALE2 0.000000 0.007923 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018743 0.00000