HEADER DNA BINDING PROTEIN/DNA 17-SEP-17 5YEH TITLE CRYSTAL STRUCTURE OF CTCF ZFS4-8-ECBS COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL REPRESSOR CTCF; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 349-490; COMPND 5 SYNONYM: 11-ZINC FINGER PROTEIN,CCCTC-BINDING FACTOR,CTCFL PARALOG; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'- COMPND 9 D(*AP*CP*GP*GP*TP*TP*TP*CP*CP*GP*CP*TP*AP*GP*AP*GP*GP*GP*CP*G)-3'); COMPND 10 CHAIN: C, E; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: DNA (5'- COMPND 14 D(*TP*CP*GP*CP*CP*CP*TP*CP*TP*AP*GP*CP*GP*GP*AP*AP*AP*CP*CP*G)-3'); COMPND 15 CHAIN: D, F; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CTCF; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI K-12; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 83333; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630; SOURCE 12 MOL_ID: 3; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 15 ORGANISM_TAXID: 32630 KEYWDS ZINC FINGERS, INSULATORS, ENHANCERS, PROMOTERS, 3D GENOME, KEYWDS 2 TOPOLOGICAL DOMAINS, CONTACT LOOPS, HIGHER-ORDER CHROMATIN KEYWDS 3 STRUCTURE, DNA BINDING PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.YIN,J.WANG,M.WANG,X.LI,Y.WANG REVDAT 3 22-NOV-23 5YEH 1 LINK REVDAT 2 23-JAN-19 5YEH 1 TITLE REVDAT 1 29-NOV-17 5YEH 0 JRNL AUTH M.YIN,J.WANG,M.WANG,X.LI,M.ZHANG,Q.WU,Y.WANG JRNL TITL MOLECULAR MECHANISM OF DIRECTIONAL CTCF RECOGNITION OF A JRNL TITL 2 DIVERSE RANGE OF GENOMIC SITES JRNL REF CELL RES. V. 27 1365 2017 JRNL REFN ISSN 1748-7838 JRNL PMID 29076501 JRNL DOI 10.1038/CR.2017.131 REMARK 2 REMARK 2 RESOLUTION. 2.33 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.12_2829: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.33 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.71 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.980 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 3 NUMBER OF REFLECTIONS : 25750 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.224 REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.270 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1291 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.7091 - 4.8375 0.94 2669 153 0.1789 0.2111 REMARK 3 2 4.8375 - 3.8416 0.97 2721 147 0.1803 0.2170 REMARK 3 3 3.8416 - 3.3566 0.96 2727 139 0.1996 0.2820 REMARK 3 4 3.3566 - 3.0499 0.95 2685 153 0.2631 0.3019 REMARK 3 5 3.0499 - 2.8314 0.97 2794 135 0.2907 0.3301 REMARK 3 6 2.8314 - 2.6646 0.96 2679 139 0.2903 0.3262 REMARK 3 7 2.6646 - 2.5312 0.97 2767 153 0.2930 0.3773 REMARK 3 8 2.5312 - 2.4210 0.97 2754 126 0.2866 0.3638 REMARK 3 9 2.4210 - 2.3279 0.93 2663 146 0.2976 0.3557 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.390 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.890 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 4022 REMARK 3 ANGLE : 1.208 5760 REMARK 3 CHIRALITY : 0.067 626 REMARK 3 PLANARITY : 0.008 460 REMARK 3 DIHEDRAL : 27.849 1576 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 21 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 349 THROUGH 374 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.3051 -10.0994 -14.7984 REMARK 3 T TENSOR REMARK 3 T11: 0.7014 T22: 0.8201 REMARK 3 T33: 0.5882 T12: 0.0611 REMARK 3 T13: -0.0384 T23: 0.1590 REMARK 3 L TENSOR REMARK 3 L11: 0.0401 L22: 0.0062 REMARK 3 L33: 0.0243 L12: 0.0108 REMARK 3 L13: -0.0184 L23: 0.0027 REMARK 3 S TENSOR REMARK 3 S11: 0.4133 S12: 0.1852 S13: 0.0856 REMARK 3 S21: -0.3623 S22: 0.2760 S23: 0.0230 REMARK 3 S31: -0.3455 S32: 0.2111 S33: -0.0027 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 378 THROUGH 403 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.1857 -24.6720 -7.0710 REMARK 3 T TENSOR REMARK 3 T11: 0.2812 T22: 0.2706 REMARK 3 T33: 0.3963 T12: 0.0189 REMARK 3 T13: -0.0906 T23: -0.0178 REMARK 3 L TENSOR REMARK 3 L11: 0.0249 L22: 0.0593 REMARK 3 L33: 0.1715 L12: -0.0258 REMARK 3 L13: -0.0565 L23: 0.0072 REMARK 3 S TENSOR REMARK 3 S11: -0.0963 S12: 0.2769 S13: 0.3408 REMARK 3 S21: -0.2470 S22: -0.1192 S23: 0.3134 REMARK 3 S31: 0.1154 S32: 0.2279 S33: -0.0043 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 406 THROUGH 431 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.7244 -10.4497 -0.6111 REMARK 3 T TENSOR REMARK 3 T11: 0.2023 T22: 0.2861 REMARK 3 T33: 0.4498 T12: -0.0394 REMARK 3 T13: 0.0517 T23: -0.0213 REMARK 3 L TENSOR REMARK 3 L11: 0.1178 L22: 0.0750 REMARK 3 L33: 0.2857 L12: -0.0621 REMARK 3 L13: -0.0497 L23: 0.0641 REMARK 3 S TENSOR REMARK 3 S11: 0.1592 S12: 0.1538 S13: 0.2531 REMARK 3 S21: -0.1637 S22: -0.2364 S23: -0.3079 REMARK 3 S31: -0.0740 S32: -0.0748 S33: -0.0101 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 436 THROUGH 461 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.0671 -0.2316 12.5985 REMARK 3 T TENSOR REMARK 3 T11: 0.1940 T22: 0.3103 REMARK 3 T33: 0.2917 T12: 0.0194 REMARK 3 T13: 0.0885 T23: 0.0795 REMARK 3 L TENSOR REMARK 3 L11: 0.0287 L22: 0.0231 REMARK 3 L33: 0.2492 L12: -0.0428 REMARK 3 L13: 0.0531 L23: -0.0795 REMARK 3 S TENSOR REMARK 3 S11: -0.2542 S12: -0.4365 S13: -0.3364 REMARK 3 S21: -0.0400 S22: -0.2127 S23: -0.1492 REMARK 3 S31: -0.0613 S32: 0.1735 S33: -0.0583 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 466 THROUGH 487 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.9707 -0.9290 29.8273 REMARK 3 T TENSOR REMARK 3 T11: 0.6023 T22: 0.7539 REMARK 3 T33: 0.2910 T12: -0.0815 REMARK 3 T13: 0.1562 T23: 0.2257 REMARK 3 L TENSOR REMARK 3 L11: 0.2934 L22: 0.4562 REMARK 3 L33: 0.1648 L12: -0.3542 REMARK 3 L13: 0.1816 L23: -0.2573 REMARK 3 S TENSOR REMARK 3 S11: 0.2834 S12: 0.3681 S13: -0.2022 REMARK 3 S21: -0.2067 S22: 0.3212 S23: 0.0868 REMARK 3 S31: -0.1983 S32: 0.2917 S33: 0.0433 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 5 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.9579 -10.9343 31.1749 REMARK 3 T TENSOR REMARK 3 T11: 0.8612 T22: 0.6585 REMARK 3 T33: 0.4571 T12: -0.0552 REMARK 3 T13: -0.2019 T23: 0.0273 REMARK 3 L TENSOR REMARK 3 L11: 0.0885 L22: 0.0881 REMARK 3 L33: 0.0012 L12: -0.0006 REMARK 3 L13: 0.0060 L23: -0.0116 REMARK 3 S TENSOR REMARK 3 S11: 0.2464 S12: 0.0725 S13: -0.1331 REMARK 3 S21: 0.1271 S22: 0.5254 S23: 0.2662 REMARK 3 S31: 0.2321 S32: -0.2019 S33: -0.0050 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 6 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.3340 -12.2791 5.9147 REMARK 3 T TENSOR REMARK 3 T11: 0.3164 T22: 0.2505 REMARK 3 T33: 0.2867 T12: 0.0186 REMARK 3 T13: -0.0163 T23: 0.0599 REMARK 3 L TENSOR REMARK 3 L11: 1.9476 L22: 0.5225 REMARK 3 L33: 0.6230 L12: 1.0114 REMARK 3 L13: 0.5869 L23: 0.3212 REMARK 3 S TENSOR REMARK 3 S11: 0.0041 S12: 0.2154 S13: -0.4663 REMARK 3 S21: 0.1986 S22: 0.3272 S23: -0.2735 REMARK 3 S31: -0.0058 S32: -0.0996 S33: 0.1663 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 16 THROUGH 20 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.3358 -8.5590 -19.2441 REMARK 3 T TENSOR REMARK 3 T11: 0.6130 T22: 0.9039 REMARK 3 T33: 0.3630 T12: 0.1472 REMARK 3 T13: -0.0418 T23: -0.0363 REMARK 3 L TENSOR REMARK 3 L11: 0.0433 L22: 0.0444 REMARK 3 L33: 0.0203 L12: -0.0275 REMARK 3 L13: 0.0235 L23: 0.0066 REMARK 3 S TENSOR REMARK 3 S11: 0.1179 S12: 0.0732 S13: 0.0024 REMARK 3 S21: -0.0660 S22: 0.3109 S23: 0.0791 REMARK 3 S31: 0.0453 S32: -0.1333 S33: -0.0012 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 1 THROUGH 5 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.0114 -16.7382 -21.8405 REMARK 3 T TENSOR REMARK 3 T11: 0.8376 T22: 1.0423 REMARK 3 T33: 0.3507 T12: -0.0620 REMARK 3 T13: -0.0642 T23: -0.0987 REMARK 3 L TENSOR REMARK 3 L11: 0.1914 L22: 0.3711 REMARK 3 L33: 0.0698 L12: 0.1574 REMARK 3 L13: 0.0872 L23: 0.0046 REMARK 3 S TENSOR REMARK 3 S11: -0.1258 S12: -0.0566 S13: -0.2569 REMARK 3 S21: -0.0516 S22: -0.1565 S23: -0.2072 REMARK 3 S31: 0.0873 S32: -0.0337 S33: -0.0274 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 6 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.0615 -11.9419 3.3958 REMARK 3 T TENSOR REMARK 3 T11: 0.3726 T22: 0.3390 REMARK 3 T33: 0.3122 T12: 0.0207 REMARK 3 T13: -0.0061 T23: -0.0005 REMARK 3 L TENSOR REMARK 3 L11: 0.1051 L22: 0.2290 REMARK 3 L33: 0.1842 L12: -0.0386 REMARK 3 L13: 0.0805 L23: 0.2067 REMARK 3 S TENSOR REMARK 3 S11: 0.2678 S12: -0.0579 S13: -0.2960 REMARK 3 S21: -0.0745 S22: 0.2223 S23: -0.0449 REMARK 3 S31: -0.0001 S32: -0.1967 S33: 0.0007 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 16 THROUGH 20 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.3160 -6.1464 24.6293 REMARK 3 T TENSOR REMARK 3 T11: 0.7241 T22: 0.5531 REMARK 3 T33: 0.5794 T12: 0.0405 REMARK 3 T13: -0.1494 T23: -0.1164 REMARK 3 L TENSOR REMARK 3 L11: 0.0103 L22: 0.0180 REMARK 3 L33: 0.0295 L12: -0.0089 REMARK 3 L13: -0.0175 L23: 0.0094 REMARK 3 S TENSOR REMARK 3 S11: 0.1282 S12: -0.1611 S13: -0.2520 REMARK 3 S21: 0.2720 S22: 0.0754 S23: -0.3870 REMARK 3 S31: -0.2260 S32: -0.0402 S33: -0.0006 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 352 THROUGH 374 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.9096 32.8292 15.0519 REMARK 3 T TENSOR REMARK 3 T11: 1.2554 T22: 0.6023 REMARK 3 T33: 0.7130 T12: 0.4595 REMARK 3 T13: -0.3992 T23: -0.8601 REMARK 3 L TENSOR REMARK 3 L11: 0.0896 L22: 0.1279 REMARK 3 L33: 0.0556 L12: -0.0571 REMARK 3 L13: -0.0466 L23: -0.0084 REMARK 3 S TENSOR REMARK 3 S11: 0.1977 S12: -0.2221 S13: 0.0344 REMARK 3 S21: 0.0840 S22: -0.0321 S23: 0.0151 REMARK 3 S31: -0.1042 S32: 0.0540 S33: 0.1383 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 378 THROUGH 402 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.9904 15.9957 7.2597 REMARK 3 T TENSOR REMARK 3 T11: 0.1762 T22: 0.0915 REMARK 3 T33: 0.2831 T12: -0.0489 REMARK 3 T13: -0.0233 T23: -0.0240 REMARK 3 L TENSOR REMARK 3 L11: 0.3299 L22: 1.3096 REMARK 3 L33: 1.8058 L12: 0.5688 REMARK 3 L13: 0.7773 L23: 1.2078 REMARK 3 S TENSOR REMARK 3 S11: 0.1210 S12: -0.6335 S13: 0.0107 REMARK 3 S21: 0.0911 S22: -0.5019 S23: 0.4716 REMARK 3 S31: -0.0994 S32: -0.5537 S33: -0.1082 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 406 THROUGH 431 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.9990 4.0549 2.0269 REMARK 3 T TENSOR REMARK 3 T11: 0.1235 T22: 0.2376 REMARK 3 T33: 0.3645 T12: -0.0246 REMARK 3 T13: 0.0051 T23: 0.0500 REMARK 3 L TENSOR REMARK 3 L11: 0.0288 L22: 0.0921 REMARK 3 L33: 0.3793 L12: 0.0074 REMARK 3 L13: -0.0705 L23: -0.1050 REMARK 3 S TENSOR REMARK 3 S11: -0.0236 S12: -0.1231 S13: 0.2869 REMARK 3 S21: -0.0869 S22: 0.1752 S23: 0.1890 REMARK 3 S31: -0.0841 S32: -0.0811 S33: 0.0212 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 436 THROUGH 461 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.6751 22.8267 -11.0097 REMARK 3 T TENSOR REMARK 3 T11: 0.3429 T22: 0.2417 REMARK 3 T33: 0.3229 T12: -0.0207 REMARK 3 T13: 0.0166 T23: 0.0020 REMARK 3 L TENSOR REMARK 3 L11: 0.7966 L22: 0.3712 REMARK 3 L33: 0.6676 L12: -0.2328 REMARK 3 L13: 0.6845 L23: -0.2298 REMARK 3 S TENSOR REMARK 3 S11: -0.1389 S12: -0.2811 S13: -0.0205 REMARK 3 S21: 0.0374 S22: 0.0986 S23: 0.0230 REMARK 3 S31: -0.2920 S32: -0.3751 S33: -0.0156 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 466 THROUGH 487 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.7798 32.0654 -28.4314 REMARK 3 T TENSOR REMARK 3 T11: 0.6537 T22: 0.5184 REMARK 3 T33: 0.2211 T12: 0.0690 REMARK 3 T13: 0.0654 T23: 0.0253 REMARK 3 L TENSOR REMARK 3 L11: 0.4537 L22: 0.7467 REMARK 3 L33: 0.4307 L12: 0.5070 REMARK 3 L13: -0.3744 L23: -0.2892 REMARK 3 S TENSOR REMARK 3 S11: 0.2660 S12: 0.0942 S13: -0.0144 REMARK 3 S21: 0.3909 S22: -0.3938 S23: 0.0725 REMARK 3 S31: -0.0121 S32: 0.1068 S33: 0.4170 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 1 THROUGH 5 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.1579 12.7018 -29.8639 REMARK 3 T TENSOR REMARK 3 T11: 0.8259 T22: 0.6066 REMARK 3 T33: 0.4771 T12: 0.0054 REMARK 3 T13: 0.0404 T23: -0.2867 REMARK 3 L TENSOR REMARK 3 L11: 0.0376 L22: 0.0127 REMARK 3 L33: 0.0312 L12: -0.0106 REMARK 3 L13: 0.0259 L23: -0.0216 REMARK 3 S TENSOR REMARK 3 S11: 0.1008 S12: 0.1500 S13: -0.0698 REMARK 3 S21: 0.2289 S22: -0.0161 S23: 0.0585 REMARK 3 S31: -0.0852 S32: -0.0289 S33: 0.0083 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 6 THROUGH 20 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.6587 16.9206 3.8196 REMARK 3 T TENSOR REMARK 3 T11: 0.3721 T22: 0.3709 REMARK 3 T33: 0.3067 T12: 0.1125 REMARK 3 T13: -0.0598 T23: -0.1359 REMARK 3 L TENSOR REMARK 3 L11: 0.5413 L22: 0.8048 REMARK 3 L33: 0.1220 L12: 0.3563 REMARK 3 L13: -0.2357 L23: -0.0851 REMARK 3 S TENSOR REMARK 3 S11: 0.0221 S12: -0.5241 S13: 0.1763 REMARK 3 S21: 0.1989 S22: 0.1697 S23: -0.5136 REMARK 3 S31: -0.4577 S32: -0.2828 S33: 0.0316 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: CHAIN 'F' AND (RESID 1 THROUGH 5 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.0940 18.7386 22.7623 REMARK 3 T TENSOR REMARK 3 T11: 0.7290 T22: 0.9774 REMARK 3 T33: 0.2189 T12: 0.0223 REMARK 3 T13: -0.1934 T23: -0.6011 REMARK 3 L TENSOR REMARK 3 L11: 0.2178 L22: 0.4128 REMARK 3 L33: -0.0043 L12: -0.2968 REMARK 3 L13: 0.0066 L23: 0.0114 REMARK 3 S TENSOR REMARK 3 S11: 0.3217 S12: 0.2891 S13: -0.6726 REMARK 3 S21: -0.1623 S22: 0.0417 S23: -0.1347 REMARK 3 S31: 0.1183 S32: 0.1261 S33: 0.1758 REMARK 3 TLS GROUP : 20 REMARK 3 SELECTION: CHAIN 'F' AND (RESID 6 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.0241 16.7170 -2.1578 REMARK 3 T TENSOR REMARK 3 T11: 0.4014 T22: 0.4812 REMARK 3 T33: 0.4388 T12: 0.0706 REMARK 3 T13: 0.0246 T23: -0.0621 REMARK 3 L TENSOR REMARK 3 L11: 0.1195 L22: 0.1002 REMARK 3 L33: 0.0837 L12: 0.1298 REMARK 3 L13: 0.0053 L23: 0.0374 REMARK 3 S TENSOR REMARK 3 S11: 0.1156 S12: -0.0239 S13: 0.1041 REMARK 3 S21: -0.1716 S22: 0.2142 S23: -0.1145 REMARK 3 S31: -0.6119 S32: -0.3969 S33: 0.0001 REMARK 3 TLS GROUP : 21 REMARK 3 SELECTION: CHAIN 'F' AND (RESID 16 THROUGH 20 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.3965 10.7328 -23.2159 REMARK 3 T TENSOR REMARK 3 T11: 0.7406 T22: 0.7333 REMARK 3 T33: 0.4185 T12: 0.1613 REMARK 3 T13: -0.1632 T23: 0.0687 REMARK 3 L TENSOR REMARK 3 L11: 0.2759 L22: 0.4363 REMARK 3 L33: 0.0334 L12: -0.3422 REMARK 3 L13: -0.0942 L23: 0.1172 REMARK 3 S TENSOR REMARK 3 S11: 0.3929 S12: 0.2993 S13: -0.2021 REMARK 3 S21: -0.1037 S22: 0.2992 S23: 0.1899 REMARK 3 S31: -0.2945 S32: -0.3367 S33: 0.1280 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5YEH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-SEP-17. REMARK 100 THE DEPOSITION ID IS D_1300005144. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-NOV-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9785 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25836 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.330 REMARK 200 RESOLUTION RANGE LOW (A) : 32.710 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.34 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.4 REMARK 200 DATA REDUNDANCY IN SHELL : 5.50 REMARK 200 R MERGE FOR SHELL (I) : 0.66000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.540 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5YEG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS PH 5.6-6.0, 0.2 M REMARK 280 SODIUM CHLORIDE AND 17-24% PEG 3350, EVAPORATION, TEMPERATURE REMARK 280 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5490 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -71.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 488 REMARK 465 HIS A 489 REMARK 465 LYS A 490 REMARK 465 SER B 488 REMARK 465 HIS B 489 REMARK 465 LYS B 490 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 349 CG CD CE NZ REMARK 470 PHE A 351 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 352 CG CD CE NZ REMARK 470 ASP A 357 CG OD1 OD2 REMARK 470 VAL A 363 CG1 CG2 REMARK 470 SER A 364 OG REMARK 470 LYS A 365 CG CD CE NZ REMARK 470 LEU A 366 CG CD1 CD2 REMARK 470 LYS A 367 CG CD CE NZ REMARK 470 ILE A 370 CG1 CG2 CD1 REMARK 470 GLU A 376 CG CD OE1 OE2 REMARK 470 GLN A 380 CG CD OE1 NE2 REMARK 470 TYR A 462 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU A 464 CG CD OE1 OE2 REMARK 470 GLN A 465 CG CD OE1 NE2 REMARK 470 LYS A 467 CG CD CE NZ REMARK 470 ARG A 470 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 484 CG CD OE1 NE2 REMARK 470 LYS A 487 CG CD CE NZ REMARK 470 DG C 3 OP1 REMARK 470 DG C 16 OP1 REMARK 470 LYS B 349 CG CD CE NZ REMARK 470 PHE B 351 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS B 352 CG CD CE NZ REMARK 470 ASP B 357 CG OD1 OD2 REMARK 470 VAL B 363 CG1 CG2 REMARK 470 SER B 364 OG REMARK 470 LYS B 365 CG CD CE NZ REMARK 470 LEU B 366 CG CD1 CD2 REMARK 470 LYS B 367 CG CD CE NZ REMARK 470 ILE B 370 CG1 CG2 CD1 REMARK 470 GLU B 376 CG CD OE1 OE2 REMARK 470 GLN B 380 CG CD OE1 NE2 REMARK 470 TYR B 462 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU B 464 CG CD OE1 OE2 REMARK 470 GLN B 465 CG CD OE1 NE2 REMARK 470 ARG B 470 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 484 CG CD OE1 NE2 REMARK 470 LYS B 487 CG CD CE NZ REMARK 470 DG E 3 OP1 REMARK 470 DG E 16 OP1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 608 O HOH E 113 1.86 REMARK 500 OP1 DA F 15 O HOH F 101 1.89 REMARK 500 OE1 GLU B 432 O HOH B 601 1.94 REMARK 500 OD2 ASP A 451 O HOH A 601 1.95 REMARK 500 OP2 DC E 2 O HOH E 101 2.00 REMARK 500 OP1 DC F 6 O HOH F 102 2.03 REMARK 500 OP2 DC F 19 O HOH F 103 2.04 REMARK 500 O ARG A 457 OG SER A 461 2.09 REMARK 500 NZ LYS A 395 OP2 DC D 5 2.11 REMARK 500 O ARG A 396 O HOH A 602 2.14 REMARK 500 O ARG B 396 O HOH B 602 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DT C 5 O3' DT C 5 C3' -0.040 REMARK 500 DT C 6 O3' DT C 6 C3' -0.064 REMARK 500 DC C 11 O3' DC C 11 C3' -0.046 REMARK 500 CYS B 409 CB CYS B 409 SG 0.124 REMARK 500 DT E 6 O3' DT E 6 C3' -0.048 REMARK 500 DA E 15 O3' DA E 15 C3' -0.039 REMARK 500 DA F 16 O3' DA F 16 C3' -0.050 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DA C 1 C3' - C2' - C1' ANGL. DEV. = -5.0 DEGREES REMARK 500 DA C 1 O4' - C1' - N9 ANGL. DEV. = 2.3 DEGREES REMARK 500 DC C 19 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DC D 5 O4' - C1' - N1 ANGL. DEV. = 2.4 DEGREES REMARK 500 DG D 11 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 DA E 1 C3' - C2' - C1' ANGL. DEV. = -6.0 DEGREES REMARK 500 DA E 1 O4' - C1' - N9 ANGL. DEV. = 2.4 DEGREES REMARK 500 DA E 13 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 DC F 6 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 DG F 11 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 DG F 13 O4' - C1' - N9 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 355 -76.50 -90.08 REMARK 500 GLN A 486 10.45 -54.35 REMARK 500 MET B 355 -75.97 -92.72 REMARK 500 CYS B 442 -161.45 -118.11 REMARK 500 THR B 444 134.63 -28.02 REMARK 500 CYS B 472 142.83 -173.95 REMARK 500 ASP B 473 -36.18 -4.06 REMARK 500 GLN B 486 24.30 -59.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 353 SG REMARK 620 2 CYS A 356 SG 107.2 REMARK 620 3 HIS A 369 NE2 108.7 84.9 REMARK 620 4 HIS A 373 NE2 129.0 90.2 120.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 381 SG REMARK 620 2 CYS A 384 SG 121.4 REMARK 620 3 HIS A 397 NE2 110.2 99.8 REMARK 620 4 HIS A 401 NE2 110.5 114.1 97.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 503 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 409 SG REMARK 620 2 CYS A 412 SG 113.0 REMARK 620 3 HIS A 430 NE2 104.1 123.2 REMARK 620 4 HOH A 612 O 176.2 63.8 76.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 504 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 439 SG REMARK 620 2 CYS A 442 SG 125.8 REMARK 620 3 HIS A 455 NE2 113.3 93.1 REMARK 620 4 HIS A 460 NE2 108.6 117.9 90.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 505 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 469 SG REMARK 620 2 CYS A 472 SG 102.7 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 353 SG REMARK 620 2 HIS B 369 NE2 130.0 REMARK 620 3 HIS B 373 NE2 104.0 103.4 REMARK 620 4 HOH B 606 O 83.8 87.2 156.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 381 SG REMARK 620 2 CYS B 384 SG 122.0 REMARK 620 3 HIS B 397 NE2 111.3 100.8 REMARK 620 4 HIS B 401 NE2 113.6 107.3 98.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 503 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 409 SG REMARK 620 2 CYS B 412 SG 116.2 REMARK 620 3 HIS B 425 NE2 105.5 108.2 REMARK 620 4 HIS B 430 NE2 105.9 108.0 113.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 504 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 439 SG REMARK 620 2 CYS B 442 SG 115.3 REMARK 620 3 HIS B 455 NE2 106.4 108.0 REMARK 620 4 HIS B 460 NE2 104.8 125.6 93.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 505 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 469 SG REMARK 620 2 CYS B 472 SG 131.5 REMARK 620 3 HIS B 485 NE2 118.6 102.6 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 505 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5YEG RELATED DB: PDB REMARK 900 RELATED ID: 5YEF RELATED DB: PDB REMARK 900 RELATED ID: 5YEL RELATED DB: PDB DBREF 5YEH A 349 490 UNP P49711 CTCF_HUMAN 349 490 DBREF 5YEH C 1 20 PDB 5YEH 5YEH 1 20 DBREF 5YEH D 1 20 PDB 5YEH 5YEH 1 20 DBREF 5YEH B 349 490 UNP P49711 CTCF_HUMAN 349 490 DBREF 5YEH E 1 20 PDB 5YEH 5YEH 1 20 DBREF 5YEH F 1 20 PDB 5YEH 5YEH 1 20 SEQRES 1 A 142 LYS PRO PHE LYS CYS SER MET CYS ASP TYR ALA SER VAL SEQRES 2 A 142 GLU VAL SER LYS LEU LYS ARG HIS ILE ARG SER HIS THR SEQRES 3 A 142 GLY GLU ARG PRO PHE GLN CYS SER LEU CYS SER TYR ALA SEQRES 4 A 142 SER ARG ASP THR TYR LYS LEU LYS ARG HIS MET ARG THR SEQRES 5 A 142 HIS SER GLY GLU LYS PRO TYR GLU CYS TYR ILE CYS HIS SEQRES 6 A 142 ALA ARG PHE THR GLN SER GLY THR MET LYS MET HIS ILE SEQRES 7 A 142 LEU GLN LYS HIS THR GLU ASN VAL ALA LYS PHE HIS CYS SEQRES 8 A 142 PRO HIS CYS ASP THR VAL ILE ALA ARG LYS SER ASP LEU SEQRES 9 A 142 GLY VAL HIS LEU ARG LYS GLN HIS SER TYR ILE GLU GLN SEQRES 10 A 142 GLY LYS LYS CYS ARG TYR CYS ASP ALA VAL PHE HIS GLU SEQRES 11 A 142 ARG TYR ALA LEU ILE GLN HIS GLN LYS SER HIS LYS SEQRES 1 C 20 DA DC DG DG DT DT DT DC DC DG DC DT DA SEQRES 2 C 20 DG DA DG DG DG DC DG SEQRES 1 D 20 DT DC DG DC DC DC DT DC DT DA DG DC DG SEQRES 2 D 20 DG DA DA DA DC DC DG SEQRES 1 B 142 LYS PRO PHE LYS CYS SER MET CYS ASP TYR ALA SER VAL SEQRES 2 B 142 GLU VAL SER LYS LEU LYS ARG HIS ILE ARG SER HIS THR SEQRES 3 B 142 GLY GLU ARG PRO PHE GLN CYS SER LEU CYS SER TYR ALA SEQRES 4 B 142 SER ARG ASP THR TYR LYS LEU LYS ARG HIS MET ARG THR SEQRES 5 B 142 HIS SER GLY GLU LYS PRO TYR GLU CYS TYR ILE CYS HIS SEQRES 6 B 142 ALA ARG PHE THR GLN SER GLY THR MET LYS MET HIS ILE SEQRES 7 B 142 LEU GLN LYS HIS THR GLU ASN VAL ALA LYS PHE HIS CYS SEQRES 8 B 142 PRO HIS CYS ASP THR VAL ILE ALA ARG LYS SER ASP LEU SEQRES 9 B 142 GLY VAL HIS LEU ARG LYS GLN HIS SER TYR ILE GLU GLN SEQRES 10 B 142 GLY LYS LYS CYS ARG TYR CYS ASP ALA VAL PHE HIS GLU SEQRES 11 B 142 ARG TYR ALA LEU ILE GLN HIS GLN LYS SER HIS LYS SEQRES 1 E 20 DA DC DG DG DT DT DT DC DC DG DC DT DA SEQRES 2 E 20 DG DA DG DG DG DC DG SEQRES 1 F 20 DT DC DG DC DC DC DT DC DT DA DG DC DG SEQRES 2 F 20 DG DA DA DA DC DC DG HET ZN A 501 1 HET ZN A 502 1 HET ZN A 503 1 HET ZN A 504 1 HET ZN A 505 1 HET ZN B 501 1 HET ZN B 502 1 HET ZN B 503 1 HET ZN B 504 1 HET ZN B 505 1 HETNAM ZN ZINC ION FORMUL 7 ZN 10(ZN 2+) FORMUL 17 HOH *71(H2 O) HELIX 1 AA1 GLU A 362 GLY A 375 1 14 HELIX 2 AA2 ASP A 390 GLY A 403 1 14 HELIX 3 AA3 GLN A 418 HIS A 430 1 13 HELIX 4 AA4 ARG A 448 SER A 461 1 14 HELIX 5 AA5 GLU A 478 GLN A 486 1 9 HELIX 6 AA6 GLU B 362 GLY B 375 1 14 HELIX 7 AA7 ASP B 390 GLY B 403 1 14 HELIX 8 AA8 GLN B 418 HIS B 430 1 13 HELIX 9 AA9 ARG B 448 HIS B 460 1 13 HELIX 10 AB1 GLU B 478 GLN B 486 1 9 SHEET 1 AA1 2 PHE A 351 LYS A 352 0 SHEET 2 AA1 2 ALA A 359 SER A 360 -1 O SER A 360 N PHE A 351 SHEET 1 AA2 2 PHE A 379 GLN A 380 0 SHEET 2 AA2 2 ALA A 387 SER A 388 -1 O SER A 388 N PHE A 379 SHEET 1 AA3 2 TYR A 407 GLU A 408 0 SHEET 2 AA3 2 ARG A 415 PHE A 416 -1 O PHE A 416 N TYR A 407 SHEET 1 AA4 2 PHE A 437 HIS A 438 0 SHEET 2 AA4 2 VAL A 445 ILE A 446 -1 O ILE A 446 N PHE A 437 SHEET 1 AA5 2 LYS A 467 LYS A 468 0 SHEET 2 AA5 2 VAL A 475 PHE A 476 -1 O PHE A 476 N LYS A 467 SHEET 1 AA6 2 PHE B 351 LYS B 352 0 SHEET 2 AA6 2 ALA B 359 SER B 360 -1 O SER B 360 N PHE B 351 SHEET 1 AA7 2 PHE B 379 GLN B 380 0 SHEET 2 AA7 2 ALA B 387 SER B 388 -1 O SER B 388 N PHE B 379 SHEET 1 AA8 2 TYR B 407 GLU B 408 0 SHEET 2 AA8 2 ARG B 415 PHE B 416 -1 O PHE B 416 N TYR B 407 SHEET 1 AA9 2 PHE B 437 HIS B 438 0 SHEET 2 AA9 2 VAL B 445 ILE B 446 -1 O ILE B 446 N PHE B 437 SHEET 1 AB1 2 LYS B 467 CYS B 469 0 SHEET 2 AB1 2 CYS B 472 PHE B 476 -1 O PHE B 476 N LYS B 467 LINK SG CYS A 353 ZN ZN A 501 1555 1555 2.33 LINK SG CYS A 356 ZN ZN A 501 1555 1555 2.37 LINK NE2 HIS A 369 ZN ZN A 501 1555 1555 2.05 LINK NE2 HIS A 373 ZN ZN A 501 1555 1555 2.11 LINK SG CYS A 381 ZN ZN A 502 1555 1555 2.31 LINK SG CYS A 384 ZN ZN A 502 1555 1555 2.39 LINK NE2 HIS A 397 ZN ZN A 502 1555 1555 2.34 LINK NE2 HIS A 401 ZN ZN A 502 1555 1555 2.07 LINK SG CYS A 409 ZN ZN A 503 1555 1555 2.15 LINK SG CYS A 412 ZN ZN A 503 1555 1555 2.41 LINK NE2 HIS A 430 ZN ZN A 503 1555 1555 2.11 LINK SG CYS A 439 ZN ZN A 504 1555 1555 2.33 LINK SG CYS A 442 ZN ZN A 504 1555 1555 2.17 LINK NE2 HIS A 455 ZN ZN A 504 1555 1555 2.14 LINK NE2 HIS A 460 ZN ZN A 504 1555 1555 2.05 LINK SG CYS A 469 ZN ZN A 505 1555 1555 2.70 LINK SG CYS A 472 ZN ZN A 505 1555 1555 1.97 LINK ZN ZN A 503 O HOH A 612 1555 1555 2.29 LINK SG CYS B 353 ZN ZN B 501 1555 1555 2.57 LINK NE2 HIS B 369 ZN ZN B 501 1555 1555 2.62 LINK NE2 HIS B 373 ZN ZN B 501 1555 1555 1.79 LINK SG CYS B 381 ZN ZN B 502 1555 1555 2.32 LINK SG CYS B 384 ZN ZN B 502 1555 1555 2.30 LINK NE2 HIS B 397 ZN ZN B 502 1555 1555 2.12 LINK NE2 HIS B 401 ZN ZN B 502 1555 1555 2.16 LINK SG CYS B 409 ZN ZN B 503 1555 1555 2.15 LINK SG CYS B 412 ZN ZN B 503 1555 1555 2.27 LINK NE2 HIS B 425 ZN ZN B 503 1555 1555 1.92 LINK NE2 HIS B 430 ZN ZN B 503 1555 1555 2.28 LINK SG CYS B 439 ZN ZN B 504 1555 1555 2.43 LINK SG CYS B 442 ZN ZN B 504 1555 1555 2.15 LINK NE2 HIS B 455 ZN ZN B 504 1555 1555 2.09 LINK NE2 HIS B 460 ZN ZN B 504 1555 1555 1.95 LINK SG CYS B 469 ZN ZN B 505 1555 1555 2.36 LINK SG CYS B 472 ZN ZN B 505 1555 1555 2.23 LINK NE2 HIS B 485 ZN ZN B 505 1555 1555 2.15 LINK ZN ZN B 501 O HOH B 606 1555 1555 2.18 CISPEP 1 LYS A 349 PRO A 350 0 -7.16 CISPEP 2 LYS B 349 PRO B 350 0 -3.86 SITE 1 AC1 4 CYS A 353 CYS A 356 HIS A 369 HIS A 373 SITE 1 AC2 4 CYS A 381 CYS A 384 HIS A 397 HIS A 401 SITE 1 AC3 5 CYS A 409 CYS A 412 HIS A 425 HIS A 430 SITE 2 AC3 5 HOH A 612 SITE 1 AC4 4 CYS A 439 CYS A 442 HIS A 455 HIS A 460 SITE 1 AC5 4 CYS A 469 TYR A 471 CYS A 472 HIS A 485 SITE 1 AC6 5 CYS B 353 CYS B 356 HIS B 369 HIS B 373 SITE 2 AC6 5 HOH B 606 SITE 1 AC7 4 CYS B 381 CYS B 384 HIS B 397 HIS B 401 SITE 1 AC8 4 CYS B 409 CYS B 412 HIS B 425 HIS B 430 SITE 1 AC9 4 CYS B 439 CYS B 442 HIS B 455 HIS B 460 SITE 1 AD1 4 CYS B 469 TYR B 471 CYS B 472 HIS B 485 CRYST1 45.845 54.876 66.938 81.17 80.11 79.72 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021813 -0.003955 -0.003329 0.00000 SCALE2 0.000000 0.018520 -0.002365 0.00000 SCALE3 0.000000 0.000000 0.015288 0.00000