HEADER DNA BINDING PROTEIN/DNA 18-SEP-17 5YEL TITLE CRYSTAL STRUCTURE OF CTCF ZFS6-11-GB7CSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (26-MER); COMPND 3 CHAIN: D, F; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: TRANSCRIPTIONAL REPRESSOR CTCF; COMPND 7 CHAIN: A, B; COMPND 8 FRAGMENT: UNP RESIDUES 405-580; COMPND 9 SYNONYM: 11-ZINC FINGER PROTEIN,CCCTC-BINDING FACTOR,CTCFL PARALOG; COMPND 10 ENGINEERED: YES; COMPND 11 MUTATION: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: DNA (26-MER); COMPND 14 CHAIN: C, E; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 7 ORGANISM_COMMON: HUMAN; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 GENE: CTCF; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI K-12; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 83333; SOURCE 12 MOL_ID: 3; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 15 ORGANISM_TAXID: 32630 KEYWDS ZINC FINGERS, INSULATORS, ENHANCERS, PROMOTERS, 3D GENOME, KEYWDS 2 TOPOLOGICAL DOMAINS, CONTACT LOOPS, HIGHER-ORDER CHROMATIN KEYWDS 3 STRUCTURE, DNA BINDING PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.YIN,J.WANG,M.WANG,X.LI,Y.WANG REVDAT 2 27-MAR-24 5YEL 1 REMARK REVDAT 1 29-NOV-17 5YEL 0 JRNL AUTH M.YIN,J.WANG,M.WANG,X.LI,M.ZHANG,Q.WU,Y.WANG JRNL TITL MOLECULAR MECHANISM OF DIRECTIONAL CTCF RECOGNITION OF A JRNL TITL 2 DIVERSE RANGE OF GENOMIC SITES JRNL REF CELL RES. V. 27 1365 2017 JRNL REFN ISSN 1748-7838 JRNL PMID 29076501 JRNL DOI 10.1038/CR.2017.131 REMARK 2 REMARK 2 RESOLUTION. 2.96 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.12_2829: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.96 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.87 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.400 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 20571 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.269 REMARK 3 R VALUE (WORKING SET) : 0.268 REMARK 3 FREE R VALUE : 0.286 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1029 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.8772 - 5.6574 0.97 2842 144 0.2146 0.2475 REMARK 3 2 5.6574 - 4.4927 1.00 2883 136 0.2469 0.2690 REMARK 3 3 4.4927 - 3.9255 1.00 2797 153 0.2612 0.2633 REMARK 3 4 3.9255 - 3.5669 0.99 2835 156 0.2830 0.3083 REMARK 3 5 3.5669 - 3.3114 0.96 2682 160 0.3124 0.3077 REMARK 3 6 3.3114 - 3.1162 0.95 2741 115 0.3552 0.3145 REMARK 3 7 3.1162 - 2.9602 0.99 2762 165 0.3908 0.4420 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.490 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 34.680 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 5084 REMARK 3 ANGLE : 1.310 7285 REMARK 3 CHIRALITY : 0.074 776 REMARK 3 PLANARITY : 0.006 575 REMARK 3 DIHEDRAL : 32.291 2002 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 24 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 1 THROUGH 5 ) REMARK 3 ORIGIN FOR THE GROUP (A): 389.0679 14.9713 125.6457 REMARK 3 T TENSOR REMARK 3 T11: 0.4044 T22: 0.5596 REMARK 3 T33: 0.3040 T12: 0.0355 REMARK 3 T13: -0.0650 T23: -0.0667 REMARK 3 L TENSOR REMARK 3 L11: 8.5134 L22: 4.7093 REMARK 3 L33: 1.5857 L12: -0.3871 REMARK 3 L13: 0.7740 L23: -0.6090 REMARK 3 S TENSOR REMARK 3 S11: -0.0956 S12: -0.0705 S13: -0.1386 REMARK 3 S21: 0.3510 S22: 0.1461 S23: -0.1008 REMARK 3 S31: -0.0783 S32: -0.0359 S33: -0.0595 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 6 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): 369.0185 14.6126 113.7829 REMARK 3 T TENSOR REMARK 3 T11: 0.5066 T22: 0.6019 REMARK 3 T33: 0.7532 T12: 0.1891 REMARK 3 T13: -0.2266 T23: -0.0324 REMARK 3 L TENSOR REMARK 3 L11: 6.2739 L22: 1.9033 REMARK 3 L33: 1.8161 L12: 1.5486 REMARK 3 L13: 2.0708 L23: 0.3999 REMARK 3 S TENSOR REMARK 3 S11: 0.1049 S12: 0.1976 S13: -0.7331 REMARK 3 S21: -0.1729 S22: 0.2552 S23: 0.5369 REMARK 3 S31: 0.1709 S32: -0.2510 S33: -0.2632 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 16 THROUGH 26 ) REMARK 3 ORIGIN FOR THE GROUP (A): 337.0974 13.2145 97.2166 REMARK 3 T TENSOR REMARK 3 T11: 0.7072 T22: 0.9098 REMARK 3 T33: 1.8130 T12: 0.1410 REMARK 3 T13: -0.5824 T23: -0.1328 REMARK 3 L TENSOR REMARK 3 L11: 5.2704 L22: 1.3347 REMARK 3 L33: 1.2334 L12: -0.4178 REMARK 3 L13: 1.5464 L23: -0.1864 REMARK 3 S TENSOR REMARK 3 S11: 0.1847 S12: 0.0461 S13: -0.9009 REMARK 3 S21: 0.2159 S22: 0.2515 S23: -0.0665 REMARK 3 S31: 0.2778 S32: -0.4372 S33: -0.3564 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 406 THROUGH 430 ) REMARK 3 ORIGIN FOR THE GROUP (A): 305.9842 60.1986 141.6625 REMARK 3 T TENSOR REMARK 3 T11: 1.0283 T22: 0.8100 REMARK 3 T33: 0.8952 T12: 0.1929 REMARK 3 T13: -0.1761 T23: -0.1451 REMARK 3 L TENSOR REMARK 3 L11: 1.0575 L22: 0.1388 REMARK 3 L33: 1.2189 L12: -0.1026 REMARK 3 L13: -0.9858 L23: 0.2885 REMARK 3 S TENSOR REMARK 3 S11: 0.0134 S12: -0.1284 S13: 0.4003 REMARK 3 S21: 0.1527 S22: -0.1093 S23: 0.1562 REMARK 3 S31: -0.9684 S32: -0.1868 S33: 0.0459 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 436 THROUGH 461 ) REMARK 3 ORIGIN FOR THE GROUP (A): 320.8528 41.7044 136.1259 REMARK 3 T TENSOR REMARK 3 T11: 0.3369 T22: 0.1650 REMARK 3 T33: 0.4104 T12: 0.1287 REMARK 3 T13: 0.0685 T23: -0.1588 REMARK 3 L TENSOR REMARK 3 L11: 0.0058 L22: 0.0028 REMARK 3 L33: 0.0087 L12: 0.0044 REMARK 3 L13: 0.0020 L23: -0.0061 REMARK 3 S TENSOR REMARK 3 S11: -0.1350 S12: -0.0134 S13: 0.0342 REMARK 3 S21: -0.0373 S22: 0.0079 S23: 0.0328 REMARK 3 S31: -0.1166 S32: -0.0429 S33: 0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 466 THROUGH 491 ) REMARK 3 ORIGIN FOR THE GROUP (A): 339.7171 36.8921 134.6999 REMARK 3 T TENSOR REMARK 3 T11: 0.2978 T22: 0.3869 REMARK 3 T33: 0.3494 T12: -0.0172 REMARK 3 T13: 0.0211 T23: -0.0729 REMARK 3 L TENSOR REMARK 3 L11: 0.0038 L22: 0.0062 REMARK 3 L33: 0.0048 L12: -0.0025 REMARK 3 L13: 0.0006 L23: -0.0006 REMARK 3 S TENSOR REMARK 3 S11: -0.0512 S12: -0.0363 S13: 0.0448 REMARK 3 S21: 0.0560 S22: -0.0721 S23: -0.0353 REMARK 3 S31: -0.0934 S32: -0.0107 S33: -0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 494 THROUGH 518 ) REMARK 3 ORIGIN FOR THE GROUP (A): 359.9397 41.6473 139.4741 REMARK 3 T TENSOR REMARK 3 T11: 0.5766 T22: 0.5198 REMARK 3 T33: 0.4362 T12: -0.0493 REMARK 3 T13: -0.0198 T23: -0.1685 REMARK 3 L TENSOR REMARK 3 L11: 0.0019 L22: -0.0021 REMARK 3 L33: 0.0018 L12: -0.0003 REMARK 3 L13: -0.0016 L23: 0.0053 REMARK 3 S TENSOR REMARK 3 S11: 0.0071 S12: 0.0311 S13: -0.0111 REMARK 3 S21: -0.0340 S22: 0.0605 S23: 0.0047 REMARK 3 S31: 0.0027 S32: -0.0164 S33: 0.0000 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 522 THROUGH 547 ) REMARK 3 ORIGIN FOR THE GROUP (A): 371.2317 58.8917 142.6635 REMARK 3 T TENSOR REMARK 3 T11: 0.3107 T22: 0.5222 REMARK 3 T33: -0.3598 T12: -0.3937 REMARK 3 T13: 0.4696 T23: 0.4075 REMARK 3 L TENSOR REMARK 3 L11: -0.0032 L22: -0.0034 REMARK 3 L33: 0.0051 L12: 0.0060 REMARK 3 L13: 0.0002 L23: -0.0011 REMARK 3 S TENSOR REMARK 3 S11: 0.0416 S12: 0.0207 S13: -0.0813 REMARK 3 S21: 0.0102 S22: 0.0331 S23: 0.0634 REMARK 3 S31: 0.0199 S32: -0.0253 S33: -0.0000 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 554 THROUGH 577 ) REMARK 3 ORIGIN FOR THE GROUP (A): 365.8961 56.0541 169.1424 REMARK 3 T TENSOR REMARK 3 T11: 0.3157 T22: 0.1666 REMARK 3 T33: 0.0813 T12: -0.0288 REMARK 3 T13: 0.0850 T23: 0.0479 REMARK 3 L TENSOR REMARK 3 L11: 0.0011 L22: -0.0042 REMARK 3 L33: -0.0002 L12: -0.0015 REMARK 3 L13: -0.0005 L23: -0.0005 REMARK 3 S TENSOR REMARK 3 S11: 0.0123 S12: 0.0309 S13: -0.0246 REMARK 3 S21: 0.0482 S22: -0.0250 S23: 0.0303 REMARK 3 S31: 0.0165 S32: 0.0249 S33: -0.0000 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 406 THROUGH 430 ) REMARK 3 ORIGIN FOR THE GROUP (A): 336.2151 7.4297 80.8069 REMARK 3 T TENSOR REMARK 3 T11: 0.7132 T22: 1.1877 REMARK 3 T33: 0.9285 T12: 0.0965 REMARK 3 T13: -0.0367 T23: -0.1841 REMARK 3 L TENSOR REMARK 3 L11: 0.8225 L22: 0.0850 REMARK 3 L33: 0.9880 L12: -0.1879 REMARK 3 L13: 0.1943 L23: -0.2301 REMARK 3 S TENSOR REMARK 3 S11: -0.0366 S12: 0.2684 S13: -0.4207 REMARK 3 S21: -0.2923 S22: 0.0442 S23: 0.0962 REMARK 3 S31: 0.4913 S32: 0.1009 S33: 0.0930 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 436 THROUGH 461 ) REMARK 3 ORIGIN FOR THE GROUP (A): 340.7305 26.0366 95.7842 REMARK 3 T TENSOR REMARK 3 T11: 0.3567 T22: 0.2459 REMARK 3 T33: 0.3514 T12: 0.0084 REMARK 3 T13: -0.0370 T23: -0.2614 REMARK 3 L TENSOR REMARK 3 L11: 0.0099 L22: 0.0035 REMARK 3 L33: 0.0062 L12: 0.0012 REMARK 3 L13: -0.0053 L23: -0.0062 REMARK 3 S TENSOR REMARK 3 S11: -0.0606 S12: 0.0741 S13: -0.1445 REMARK 3 S21: -0.0509 S22: 0.0154 S23: -0.0160 REMARK 3 S31: -0.0117 S32: -0.0126 S33: -0.0000 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 466 THROUGH 491 ) REMARK 3 ORIGIN FOR THE GROUP (A): 351.0981 30.7738 111.6859 REMARK 3 T TENSOR REMARK 3 T11: 0.3673 T22: 0.2271 REMARK 3 T33: 0.2566 T12: 0.0969 REMARK 3 T13: -0.0047 T23: 0.0054 REMARK 3 L TENSOR REMARK 3 L11: 0.0015 L22: 0.0015 REMARK 3 L33: 0.0045 L12: 0.0019 REMARK 3 L13: -0.0007 L23: 0.0055 REMARK 3 S TENSOR REMARK 3 S11: 0.0158 S12: 0.0010 S13: -0.0602 REMARK 3 S21: -0.0035 S22: -0.0985 S23: -0.0636 REMARK 3 S31: 0.0193 S32: 0.0297 S33: 0.0000 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 494 THROUGH 518 ) REMARK 3 ORIGIN FOR THE GROUP (A): 367.1858 26.0454 124.7970 REMARK 3 T TENSOR REMARK 3 T11: 0.0585 T22: 0.1474 REMARK 3 T33: 0.4305 T12: 0.3251 REMARK 3 T13: 0.0245 T23: -0.2213 REMARK 3 L TENSOR REMARK 3 L11: 0.0030 L22: -0.0006 REMARK 3 L33: 0.0024 L12: -0.0092 REMARK 3 L13: -0.0018 L23: 0.0035 REMARK 3 S TENSOR REMARK 3 S11: 0.0078 S12: -0.0104 S13: 0.0439 REMARK 3 S21: 0.0007 S22: 0.0321 S23: 0.0402 REMARK 3 S31: -0.0061 S32: -0.0168 S33: -0.0000 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 522 THROUGH 547 ) REMARK 3 ORIGIN FOR THE GROUP (A): 376.6037 8.7083 131.6979 REMARK 3 T TENSOR REMARK 3 T11: 0.1218 T22: 0.4853 REMARK 3 T33: -0.2338 T12: -0.0007 REMARK 3 T13: 0.5592 T23: 0.5123 REMARK 3 L TENSOR REMARK 3 L11: 0.0005 L22: 0.0031 REMARK 3 L33: 0.0009 L12: -0.0012 REMARK 3 L13: -0.0059 L23: -0.0075 REMARK 3 S TENSOR REMARK 3 S11: -0.0628 S12: -0.0174 S13: 0.0577 REMARK 3 S21: 0.0021 S22: -0.0353 S23: 0.0202 REMARK 3 S31: -0.0146 S32: -0.0242 S33: 0.0000 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 554 THROUGH 578 ) REMARK 3 ORIGIN FOR THE GROUP (A): 394.4903 11.6262 111.2400 REMARK 3 T TENSOR REMARK 3 T11: -0.2094 T22: 0.0018 REMARK 3 T33: -0.1308 T12: 0.0797 REMARK 3 T13: 0.3690 T23: 0.1327 REMARK 3 L TENSOR REMARK 3 L11: 0.4244 L22: 2.4669 REMARK 3 L33: 0.8387 L12: -0.1192 REMARK 3 L13: 0.5999 L23: -0.3517 REMARK 3 S TENSOR REMARK 3 S11: 0.0746 S12: 0.0725 S13: 0.0713 REMARK 3 S21: -0.3718 S22: -0.0559 S23: -0.2660 REMARK 3 S31: 0.0417 S32: 0.0852 S33: 0.0192 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 5 ) REMARK 3 ORIGIN FOR THE GROUP (A): 327.2410 18.3397 88.7180 REMARK 3 T TENSOR REMARK 3 T11: 0.4574 T22: 0.4476 REMARK 3 T33: 0.7164 T12: -0.0303 REMARK 3 T13: -0.1157 T23: 0.0736 REMARK 3 L TENSOR REMARK 3 L11: 5.8877 L22: 4.7474 REMARK 3 L33: 3.1280 L12: 2.2576 REMARK 3 L13: 4.0761 L23: 0.8904 REMARK 3 S TENSOR REMARK 3 S11: -0.1894 S12: 0.4918 S13: 0.1876 REMARK 3 S21: -0.3976 S22: 0.2906 S23: -0.0326 REMARK 3 S31: -0.4494 S32: 0.2309 S33: -0.0218 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 6 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): 347.2789 12.6508 102.5645 REMARK 3 T TENSOR REMARK 3 T11: 1.0432 T22: 0.9875 REMARK 3 T33: 1.2345 T12: 0.0172 REMARK 3 T13: -0.5479 T23: -0.0887 REMARK 3 L TENSOR REMARK 3 L11: 5.6402 L22: 0.0025 REMARK 3 L33: 0.8868 L12: -0.0197 REMARK 3 L13: 2.2145 L23: -0.0069 REMARK 3 S TENSOR REMARK 3 S11: 0.2548 S12: 0.0001 S13: -0.5602 REMARK 3 S21: 0.0151 S22: 0.2488 S23: -0.1346 REMARK 3 S31: 0.4160 S32: 0.0881 S33: -0.3633 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 16 THROUGH 26 ) REMARK 3 ORIGIN FOR THE GROUP (A): 377.7925 16.6893 119.3366 REMARK 3 T TENSOR REMARK 3 T11: 0.6583 T22: 0.4633 REMARK 3 T33: 0.7062 T12: 0.0458 REMARK 3 T13: -0.1696 T23: 0.0645 REMARK 3 L TENSOR REMARK 3 L11: 4.9647 L22: 2.0952 REMARK 3 L33: 2.3280 L12: 0.1028 REMARK 3 L13: 1.4856 L23: 0.0221 REMARK 3 S TENSOR REMARK 3 S11: 0.0214 S12: -0.3458 S13: 0.3686 REMARK 3 S21: 0.0456 S22: 0.1544 S23: 0.2387 REMARK 3 S31: -0.3000 S32: -0.2917 S33: -0.1733 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: CHAIN 'F' AND (RESID 1 THROUGH 5 ) REMARK 3 ORIGIN FOR THE GROUP (A): 373.9291 52.7346 156.3409 REMARK 3 T TENSOR REMARK 3 T11: 0.3489 T22: 0.7528 REMARK 3 T33: 0.4743 T12: -0.0326 REMARK 3 T13: 0.0375 T23: -0.0442 REMARK 3 L TENSOR REMARK 3 L11: 3.2890 L22: 2.2146 REMARK 3 L33: 5.5843 L12: 0.2596 REMARK 3 L13: 3.2205 L23: -0.2426 REMARK 3 S TENSOR REMARK 3 S11: -0.1157 S12: 0.0206 S13: -0.0933 REMARK 3 S21: -0.0664 S22: 0.1609 S23: -0.2679 REMARK 3 S31: -0.1245 S32: -0.0868 S33: -0.0227 REMARK 3 TLS GROUP : 20 REMARK 3 SELECTION: CHAIN 'F' AND (RESID 6 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): 352.3278 53.1230 147.6317 REMARK 3 T TENSOR REMARK 3 T11: 0.4659 T22: 0.6450 REMARK 3 T33: 0.8065 T12: -0.0962 REMARK 3 T13: -0.1798 T23: -0.1767 REMARK 3 L TENSOR REMARK 3 L11: 5.1051 L22: 1.6487 REMARK 3 L33: 2.3935 L12: -0.9058 REMARK 3 L13: 2.6078 L23: -0.8025 REMARK 3 S TENSOR REMARK 3 S11: -0.3835 S12: 0.1561 S13: 0.5133 REMARK 3 S21: -0.2675 S22: 0.2416 S23: 0.3683 REMARK 3 S31: -0.2114 S32: -0.2968 S33: 0.0778 REMARK 3 TLS GROUP : 21 REMARK 3 SELECTION: CHAIN 'F' AND (RESID 16 THROUGH 26 ) REMARK 3 ORIGIN FOR THE GROUP (A): 319.7394 54.4831 132.3932 REMARK 3 T TENSOR REMARK 3 T11: 0.8449 T22: 0.8304 REMARK 3 T33: 1.5090 T12: 0.0305 REMARK 3 T13: -0.7048 T23: -0.1227 REMARK 3 L TENSOR REMARK 3 L11: 4.1356 L22: 1.6590 REMARK 3 L33: 2.4738 L12: 0.0848 REMARK 3 L13: 2.6433 L23: 0.2559 REMARK 3 S TENSOR REMARK 3 S11: -0.2150 S12: 0.2252 S13: 0.6748 REMARK 3 S21: -0.1523 S22: 0.3217 S23: -0.2215 REMARK 3 S31: -0.5054 S32: -0.2601 S33: 0.0821 REMARK 3 TLS GROUP : 22 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 1 THROUGH 5 ) REMARK 3 ORIGIN FOR THE GROUP (A): 307.0322 49.3746 129.8181 REMARK 3 T TENSOR REMARK 3 T11: 0.4625 T22: 0.4657 REMARK 3 T33: 0.7341 T12: -0.0442 REMARK 3 T13: -0.1424 T23: -0.0249 REMARK 3 L TENSOR REMARK 3 L11: 7.5835 L22: 3.7418 REMARK 3 L33: 0.9181 L12: -1.6964 REMARK 3 L13: 1.2437 L23: -0.4468 REMARK 3 S TENSOR REMARK 3 S11: -0.1760 S12: -0.1935 S13: -0.3181 REMARK 3 S21: 0.1811 S22: 0.0862 S23: 0.1220 REMARK 3 S31: 0.1087 S32: -0.2419 S33: 0.0444 REMARK 3 TLS GROUP : 23 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 6 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): 330.1746 55.0819 137.2009 REMARK 3 T TENSOR REMARK 3 T11: 0.6574 T22: 0.9351 REMARK 3 T33: 1.5719 T12: -0.0004 REMARK 3 T13: -0.2327 T23: 0.0574 REMARK 3 L TENSOR REMARK 3 L11: 5.2886 L22: 0.1300 REMARK 3 L33: 2.3773 L12: 0.8124 REMARK 3 L13: 3.5437 L23: 0.5392 REMARK 3 S TENSOR REMARK 3 S11: -0.2608 S12: -0.0039 S13: 0.5138 REMARK 3 S21: 0.0485 S22: 0.3044 S23: -0.1637 REMARK 3 S31: -0.2252 S32: 0.1229 S33: 0.0104 REMARK 3 TLS GROUP : 24 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 16 THROUGH 26 ) REMARK 3 ORIGIN FOR THE GROUP (A): 362.0655 51.0341 151.2469 REMARK 3 T TENSOR REMARK 3 T11: 0.4450 T22: 0.4616 REMARK 3 T33: 0.7382 T12: -0.1075 REMARK 3 T13: -0.0733 T23: 0.0161 REMARK 3 L TENSOR REMARK 3 L11: 5.0572 L22: 1.5629 REMARK 3 L33: 2.2790 L12: -0.1280 REMARK 3 L13: 1.8931 L23: -0.1783 REMARK 3 S TENSOR REMARK 3 S11: 0.0293 S12: 0.3101 S13: -0.3222 REMARK 3 S21: -0.3377 S22: 0.1988 S23: 0.1708 REMARK 3 S31: 0.2290 S32: 0.0763 S33: -0.3001 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5YEL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-SEP-17. REMARK 100 THE DEPOSITION ID IS D_1300005146. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-MAR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30548 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 37.870 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 9.600 REMARK 200 R MERGE (I) : 0.08700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 30.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.96 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.01 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.70 REMARK 200 R MERGE FOR SHELL (I) : 0.65300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BIS-TRIS PH 5.6-6.0, 0.1M SODIUM REMARK 280 CHLORIDE, 17-20% PEG3350, EVAPORATION, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 95.49650 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.81550 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 95.49650 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 34.81550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6490 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -51.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -52.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, F, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 405 REMARK 465 THR A 431 REMARK 465 GLU A 432 REMARK 465 ASN A 433 REMARK 465 GLU A 520 REMARK 465 ASN A 549 REMARK 465 PHE A 550 REMARK 465 ALA A 578 REMARK 465 GLY A 579 REMARK 465 PRO A 580 REMARK 465 THR B 431 REMARK 465 GLU B 432 REMARK 465 ASN B 433 REMARK 465 GLU B 520 REMARK 465 ASN B 549 REMARK 465 PHE B 550 REMARK 465 GLY B 579 REMARK 465 PRO B 580 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 DT D 15 OP1 REMARK 470 ARG A 415 CG CD NE CZ NH1 NH2 REMARK 470 HIS A 430 C O REMARK 470 VAL A 434 CG1 CG2 REMARK 470 LYS A 436 CG CD CE NZ REMARK 470 VAL A 445 CG1 CG2 REMARK 470 ASN A 491 CG OD1 ND2 REMARK 470 GLU A 492 CG CD OE1 OE2 REMARK 470 LYS A 493 CG CD CE NZ REMARK 470 LYS A 496 CG CD CE NZ REMARK 470 ARG A 505 CG CD NE CZ NH1 NH2 REMARK 470 THR A 518 OG1 CG2 REMARK 470 LYS A 521 CG CD CE NZ REMARK 470 ASP A 529 CG OD1 OD2 REMARK 470 LYS A 530 CG CD CE NZ REMARK 470 THR A 531 OG1 CG2 REMARK 470 LYS A 543 CG CD CE NZ REMARK 470 ASP A 547 CG OD1 OD2 REMARK 470 VAL A 551 CG1 CG2 REMARK 470 LYS A 559 CG CD CE NZ REMARK 470 LYS B 405 CG CD CE NZ REMARK 470 GLU B 408 CG CD OE1 OE2 REMARK 470 HIS B 430 C O REMARK 470 VAL B 434 CG1 CG2 REMARK 470 LYS B 436 CG CD CE NZ REMARK 470 VAL B 445 CG1 CG2 REMARK 470 ASN B 491 CG OD1 ND2 REMARK 470 GLU B 492 CG CD OE1 OE2 REMARK 470 LYS B 493 CG CD CE NZ REMARK 470 LYS B 496 CG CD CE NZ REMARK 470 ARG B 505 CG CD NE CZ NH1 NH2 REMARK 470 THR B 518 OG1 CG2 REMARK 470 LYS B 521 CG CD CE NZ REMARK 470 ASP B 529 CG OD1 OD2 REMARK 470 LYS B 530 CG CD CE NZ REMARK 470 THR B 531 OG1 CG2 REMARK 470 LYS B 543 CG CD CE NZ REMARK 470 ASP B 547 CG OD1 OD2 REMARK 470 VAL B 551 CG1 CG2 REMARK 470 LYS B 559 CG CD CE NZ REMARK 470 DT F 15 OP1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN A 568 OP2 DT E 22 1.78 REMARK 500 O GLN B 536 N ASP B 539 1.91 REMARK 500 OD1 ASN B 568 OP2 DT C 22 2.14 REMARK 500 NZ LYS A 535 OP1 DG E 18 2.15 REMARK 500 OG SER B 504 O GLN B 506 2.16 REMARK 500 N CYS B 409 O ALA B 414 2.18 REMARK 500 OH TYR A 545 OP1 DG F 4 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NE2 HIS A 413 NE2 HIS B 413 1566 2.01 REMARK 500 CE1 HIS A 413 CE1 HIS B 413 1566 2.05 REMARK 500 CE1 HIS A 413 NE2 HIS B 413 1566 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC D 11 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES REMARK 500 LEU A 456 CA - CB - CG ANGL. DEV. = 15.2 DEGREES REMARK 500 CYS A 472 CA - CB - SG ANGL. DEV. = 7.6 DEGREES REMARK 500 LEU B 456 CA - CB - CG ANGL. DEV. = 14.8 DEGREES REMARK 500 CYS B 472 CA - CB - SG ANGL. DEV. = 8.3 DEGREES REMARK 500 DT C 6 O4' - C1' - N1 ANGL. DEV. = 1.8 DEGREES REMARK 500 DT C 14 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 DT C 19 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DC F 11 O4' - C1' - N1 ANGL. DEV. = 1.8 DEGREES REMARK 500 DT E 6 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DT E 14 O4' - C1' - N1 ANGL. DEV. = 2.6 DEGREES REMARK 500 DT E 19 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 436 -159.10 -77.01 REMARK 500 GLN A 486 -8.70 -56.76 REMARK 500 SER A 488 0.16 -60.41 REMARK 500 ASN A 491 -133.18 56.18 REMARK 500 THR A 518 76.65 -110.43 REMARK 500 LYS A 535 -161.62 -75.59 REMARK 500 ARG B 415 10.19 95.94 REMARK 500 THR B 518 75.93 -105.35 REMARK 500 LYS B 535 -164.70 -74.55 REMARK 500 CYS B 560 -16.54 -49.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 HIS A 546 ASP A 547 -148.11 REMARK 500 HIS B 546 ASP B 547 -132.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 409 SG REMARK 620 2 CYS A 412 SG 91.3 REMARK 620 3 HIS A 425 NE2 79.5 83.3 REMARK 620 4 HIS A 430 NE2 106.8 157.5 112.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 602 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 439 SG REMARK 620 2 CYS A 442 SG 115.9 REMARK 620 3 HIS A 455 NE2 112.2 73.7 REMARK 620 4 HIS A 460 NE2 117.6 122.2 104.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 603 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 469 SG REMARK 620 2 CYS A 472 SG 133.6 REMARK 620 3 HIS A 485 NE2 114.2 87.5 REMARK 620 4 HIS A 489 NE2 113.2 98.5 104.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 604 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 497 SG REMARK 620 2 CYS A 500 SG 101.5 REMARK 620 3 HIS A 513 NE2 128.6 66.5 REMARK 620 4 HIS A 517 NE2 129.8 76.0 97.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 605 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 525 SG REMARK 620 2 CYS A 528 SG 133.7 REMARK 620 3 HIS A 541 NE2 107.1 94.4 REMARK 620 4 HIS A 546 NE2 93.5 122.7 100.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 606 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 557 SG REMARK 620 2 CYS A 560 SG 80.7 REMARK 620 3 HIS A 573 NE2 93.3 88.8 REMARK 620 4 CYS A 577 SG 140.8 98.0 125.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 409 SG REMARK 620 2 CYS B 412 SG 89.8 REMARK 620 3 HIS B 425 NE2 84.7 75.9 REMARK 620 4 HIS B 430 NE2 137.0 118.2 131.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 602 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 439 SG REMARK 620 2 CYS B 442 SG 102.6 REMARK 620 3 HIS B 455 NE2 90.0 95.9 REMARK 620 4 HIS B 460 NE2 117.2 137.9 97.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 603 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 469 SG REMARK 620 2 CYS B 472 SG 133.4 REMARK 620 3 HIS B 485 NE2 116.1 83.2 REMARK 620 4 HIS B 489 NE2 116.1 99.9 99.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 604 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 497 SG REMARK 620 2 CYS B 500 SG 96.7 REMARK 620 3 HIS B 513 NE2 124.5 70.9 REMARK 620 4 HIS B 517 NE2 129.6 84.2 103.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 605 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 525 SG REMARK 620 2 CYS B 528 SG 144.7 REMARK 620 3 HIS B 541 NE2 116.5 89.7 REMARK 620 4 HIS B 546 NE2 105.9 95.1 92.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 606 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 557 SG REMARK 620 2 CYS B 560 SG 89.3 REMARK 620 3 HIS B 573 NE2 99.2 92.3 REMARK 620 4 CYS B 577 SG 154.2 113.1 92.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 606 DBREF 5YEL D 1 26 PDB 5YEL 5YEL 1 26 DBREF 5YEL A 405 580 UNP P49711 CTCF_HUMAN 405 580 DBREF 5YEL B 405 580 UNP P49711 CTCF_HUMAN 405 580 DBREF 5YEL C 1 26 PDB 5YEL 5YEL 1 26 DBREF 5YEL F 1 26 PDB 5YEL 5YEL 1 26 DBREF 5YEL E 1 26 PDB 5YEL 5YEL 1 26 SEQADV 5YEL SER A 504 UNP P49711 CYS 504 ENGINEERED MUTATION SEQADV 5YEL SER B 504 UNP P49711 CYS 504 ENGINEERED MUTATION SEQRES 1 D 26 DA DT DT DG DC DA DG DT DA DC DC DA DC SEQRES 2 D 26 DA DT DT DT DA DA DC DC DA DG DC DA DG SEQRES 1 A 176 LYS PRO TYR GLU CYS TYR ILE CYS HIS ALA ARG PHE THR SEQRES 2 A 176 GLN SER GLY THR MET LYS MET HIS ILE LEU GLN LYS HIS SEQRES 3 A 176 THR GLU ASN VAL ALA LYS PHE HIS CYS PRO HIS CYS ASP SEQRES 4 A 176 THR VAL ILE ALA ARG LYS SER ASP LEU GLY VAL HIS LEU SEQRES 5 A 176 ARG LYS GLN HIS SER TYR ILE GLU GLN GLY LYS LYS CYS SEQRES 6 A 176 ARG TYR CYS ASP ALA VAL PHE HIS GLU ARG TYR ALA LEU SEQRES 7 A 176 ILE GLN HIS GLN LYS SER HIS LYS ASN GLU LYS ARG PHE SEQRES 8 A 176 LYS CYS ASP GLN CYS ASP TYR ALA SER ARG GLN GLU ARG SEQRES 9 A 176 HIS MET ILE MET HIS LYS ARG THR HIS THR GLY GLU LYS SEQRES 10 A 176 PRO TYR ALA CYS SER HIS CYS ASP LYS THR PHE ARG GLN SEQRES 11 A 176 LYS GLN LEU LEU ASP MET HIS PHE LYS ARG TYR HIS ASP SEQRES 12 A 176 PRO ASN PHE VAL PRO ALA ALA PHE VAL CYS SER LYS CYS SEQRES 13 A 176 GLY LYS THR PHE THR ARG ARG ASN THR MET ALA ARG HIS SEQRES 14 A 176 ALA ASP ASN CYS ALA GLY PRO SEQRES 1 B 176 LYS PRO TYR GLU CYS TYR ILE CYS HIS ALA ARG PHE THR SEQRES 2 B 176 GLN SER GLY THR MET LYS MET HIS ILE LEU GLN LYS HIS SEQRES 3 B 176 THR GLU ASN VAL ALA LYS PHE HIS CYS PRO HIS CYS ASP SEQRES 4 B 176 THR VAL ILE ALA ARG LYS SER ASP LEU GLY VAL HIS LEU SEQRES 5 B 176 ARG LYS GLN HIS SER TYR ILE GLU GLN GLY LYS LYS CYS SEQRES 6 B 176 ARG TYR CYS ASP ALA VAL PHE HIS GLU ARG TYR ALA LEU SEQRES 7 B 176 ILE GLN HIS GLN LYS SER HIS LYS ASN GLU LYS ARG PHE SEQRES 8 B 176 LYS CYS ASP GLN CYS ASP TYR ALA SER ARG GLN GLU ARG SEQRES 9 B 176 HIS MET ILE MET HIS LYS ARG THR HIS THR GLY GLU LYS SEQRES 10 B 176 PRO TYR ALA CYS SER HIS CYS ASP LYS THR PHE ARG GLN SEQRES 11 B 176 LYS GLN LEU LEU ASP MET HIS PHE LYS ARG TYR HIS ASP SEQRES 12 B 176 PRO ASN PHE VAL PRO ALA ALA PHE VAL CYS SER LYS CYS SEQRES 13 B 176 GLY LYS THR PHE THR ARG ARG ASN THR MET ALA ARG HIS SEQRES 14 B 176 ALA ASP ASN CYS ALA GLY PRO SEQRES 1 C 26 DT DC DT DG DC DT DG DG DT DT DA DA DA SEQRES 2 C 26 DT DG DT DG DG DT DA DC DT DG DC DA DA SEQRES 1 F 26 DA DT DT DG DC DA DG DT DA DC DC DA DC SEQRES 2 F 26 DA DT DT DT DA DA DC DC DA DG DC DA DG SEQRES 1 E 26 DT DC DT DG DC DT DG DG DT DT DA DA DA SEQRES 2 E 26 DT DG DT DG DG DT DA DC DT DG DC DA DA HET ZN A 601 1 HET ZN A 602 1 HET ZN A 603 1 HET ZN A 604 1 HET ZN A 605 1 HET ZN A 606 1 HET ZN B 601 1 HET ZN B 602 1 HET ZN B 603 1 HET ZN B 604 1 HET ZN B 605 1 HET ZN B 606 1 HETNAM ZN ZINC ION FORMUL 7 ZN 12(ZN 2+) HELIX 1 AA1 GLN A 418 LYS A 429 1 12 HELIX 2 AA2 ARG A 448 HIS A 460 1 13 HELIX 3 AA3 ARG A 479 LYS A 487 1 9 HELIX 4 AA4 GLN A 506 THR A 518 1 13 HELIX 5 AA5 LYS A 535 ASP A 539 5 5 HELIX 6 AA6 MET A 540 HIS A 546 1 7 HELIX 7 AA7 ARG A 566 ASN A 576 1 11 HELIX 8 AA8 GLN B 418 LYS B 429 1 12 HELIX 9 AA9 ARG B 448 GLN B 459 1 12 HELIX 10 AB1 GLU B 478 LYS B 487 1 10 HELIX 11 AB2 SER B 488 LYS B 490 5 3 HELIX 12 AB3 GLN B 506 THR B 518 1 13 HELIX 13 AB4 LYS B 535 LEU B 538 5 4 HELIX 14 AB5 ASP B 539 HIS B 546 1 8 HELIX 15 AB6 ARG B 566 ASN B 576 1 11 SHEET 1 AA1 2 TYR A 462 LYS A 468 0 SHEET 2 AA1 2 VAL A 475 GLU A 478 -1 O PHE A 476 N LYS A 467 SHEET 1 AA2 2 PHE A 495 LYS A 496 0 SHEET 2 AA2 2 ALA A 503 SER A 504 -1 O SER A 504 N PHE A 495 SHEET 1 AA3 2 TYR A 523 ALA A 524 0 SHEET 2 AA3 2 THR A 531 PHE A 532 -1 O PHE A 532 N TYR A 523 SHEET 1 AA4 2 LYS B 467 LYS B 468 0 SHEET 2 AA4 2 VAL B 475 PHE B 476 -1 O PHE B 476 N LYS B 467 SHEET 1 AA5 2 PHE B 495 LYS B 496 0 SHEET 2 AA5 2 ALA B 503 SER B 504 -1 O SER B 504 N PHE B 495 LINK SG CYS A 409 ZN ZN A 601 1555 1555 2.98 LINK SG CYS A 412 ZN ZN A 601 1555 1555 2.07 LINK NE2 HIS A 425 ZN ZN A 601 1555 1555 2.08 LINK NE2 HIS A 430 ZN ZN A 601 1555 1555 1.98 LINK SG CYS A 439 ZN ZN A 602 1555 1555 2.20 LINK SG CYS A 442 ZN ZN A 602 1555 1555 2.02 LINK NE2 HIS A 455 ZN ZN A 602 1555 1555 2.58 LINK NE2 HIS A 460 ZN ZN A 602 1555 1555 2.07 LINK SG CYS A 469 ZN ZN A 603 1555 1555 2.28 LINK SG CYS A 472 ZN ZN A 603 1555 1555 2.51 LINK NE2 HIS A 485 ZN ZN A 603 1555 1555 2.02 LINK NE2 HIS A 489 ZN ZN A 603 1555 1555 2.00 LINK SG CYS A 497 ZN ZN A 604 1555 1555 2.21 LINK SG CYS A 500 ZN ZN A 604 1555 1555 2.35 LINK NE2 HIS A 513 ZN ZN A 604 1555 1555 1.99 LINK NE2 HIS A 517 ZN ZN A 604 1555 1555 2.03 LINK SG CYS A 525 ZN ZN A 605 1555 1555 2.27 LINK SG CYS A 528 ZN ZN A 605 1555 1555 2.13 LINK NE2 HIS A 541 ZN ZN A 605 1555 1555 2.00 LINK NE2 HIS A 546 ZN ZN A 605 1555 1555 2.25 LINK SG CYS A 557 ZN ZN A 606 1555 1555 2.40 LINK SG CYS A 560 ZN ZN A 606 1555 1555 2.25 LINK NE2 HIS A 573 ZN ZN A 606 1555 1555 1.99 LINK SG CYS A 577 ZN ZN A 606 1555 1555 2.33 LINK SG CYS B 409 ZN ZN B 601 1555 1555 2.67 LINK SG CYS B 412 ZN ZN B 601 1555 1555 1.99 LINK NE2 HIS B 425 ZN ZN B 601 1555 1555 2.02 LINK NE2 HIS B 430 ZN ZN B 601 1555 1555 1.99 LINK SG CYS B 439 ZN ZN B 602 1555 1555 2.25 LINK SG CYS B 442 ZN ZN B 602 1555 1555 2.04 LINK NE2 HIS B 455 ZN ZN B 602 1555 1555 2.03 LINK NE2 HIS B 460 ZN ZN B 602 1555 1555 1.99 LINK SG CYS B 469 ZN ZN B 603 1555 1555 2.31 LINK SG CYS B 472 ZN ZN B 603 1555 1555 2.55 LINK NE2 HIS B 485 ZN ZN B 603 1555 1555 2.01 LINK NE2 HIS B 489 ZN ZN B 603 1555 1555 2.01 LINK SG CYS B 497 ZN ZN B 604 1555 1555 2.43 LINK SG CYS B 500 ZN ZN B 604 1555 1555 2.26 LINK NE2 HIS B 513 ZN ZN B 604 1555 1555 2.05 LINK NE2 HIS B 517 ZN ZN B 604 1555 1555 2.05 LINK SG CYS B 525 ZN ZN B 605 1555 1555 2.23 LINK SG CYS B 528 ZN ZN B 605 1555 1555 2.23 LINK NE2 HIS B 541 ZN ZN B 605 1555 1555 2.02 LINK NE2 HIS B 546 ZN ZN B 605 1555 1555 2.45 LINK SG CYS B 557 ZN ZN B 606 1555 1555 2.27 LINK SG CYS B 560 ZN ZN B 606 1555 1555 2.11 LINK NE2 HIS B 573 ZN ZN B 606 1555 1555 2.04 LINK SG CYS B 577 ZN ZN B 606 1555 1555 2.20 CISPEP 1 PRO A 406 TYR A 407 0 -5.01 CISPEP 2 LYS A 436 PHE A 437 0 7.26 CISPEP 3 LYS A 490 ASN A 491 0 -27.90 CISPEP 4 ASN A 491 GLU A 492 0 -13.62 CISPEP 5 SER A 558 LYS A 559 0 -0.71 CISPEP 6 PRO B 406 TYR B 407 0 19.86 CISPEP 7 ALA B 414 ARG B 415 0 22.17 CISPEP 8 LYS B 436 PHE B 437 0 24.31 CISPEP 9 SER B 558 LYS B 559 0 -4.24 SITE 1 AC1 4 CYS A 409 CYS A 412 HIS A 425 HIS A 430 SITE 1 AC2 4 CYS A 439 CYS A 442 HIS A 455 HIS A 460 SITE 1 AC3 4 CYS A 469 CYS A 472 HIS A 485 HIS A 489 SITE 1 AC4 4 CYS A 497 CYS A 500 HIS A 513 HIS A 517 SITE 1 AC5 4 CYS A 525 CYS A 528 HIS A 541 HIS A 546 SITE 1 AC6 4 CYS A 557 CYS A 560 HIS A 573 CYS A 577 SITE 1 AC7 5 CYS B 409 CYS B 412 HIS B 425 ILE B 426 SITE 2 AC7 5 HIS B 430 SITE 1 AC8 4 CYS B 439 CYS B 442 HIS B 455 HIS B 460 SITE 1 AC9 4 CYS B 469 CYS B 472 HIS B 485 HIS B 489 SITE 1 AD1 4 CYS B 497 CYS B 500 HIS B 513 HIS B 517 SITE 1 AD2 4 CYS B 525 CYS B 528 HIS B 541 HIS B 546 SITE 1 AD3 4 CYS B 557 CYS B 560 HIS B 573 CYS B 577 CRYST1 190.993 69.631 84.445 90.00 116.25 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005236 0.000000 0.002582 0.00000 SCALE2 0.000000 0.014361 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013204 0.00000