HEADER TRANSFERASE 20-SEP-17 5YF8 TITLE CRYSTALS STRUCTURE OF CLASSICAL SWINE FEVER VIRUS NS5B (RESIDUES 1- TITLE 2 672, Y471A-E472A MUTANT) COMPND MOL_ID: 1; COMPND 2 MOLECULE: RDRP CATALYTIC; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLASSICAL SWINE FEVER VIRUS; SOURCE 3 ORGANISM_TAXID: 11096; SOURCE 4 VARIANT: T690A; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS(DE3)-RIL; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET26B KEYWDS TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR W.LIU,P.GONG REVDAT 4 22-NOV-23 5YF8 1 REMARK REVDAT 3 28-NOV-18 5YF8 1 COMPND JRNL REVDAT 2 10-OCT-18 5YF8 1 COMPND JRNL REVDAT 1 19-SEP-18 5YF8 0 JRNL AUTH W.LIU,X.SHI,P.GONG JRNL TITL A UNIQUE INTRA-MOLECULAR FIDELITY-MODULATING MECHANISM JRNL TITL 2 IDENTIFIED IN A VIRAL RNA-DEPENDENT RNA POLYMERASE. JRNL REF NUCLEIC ACIDS RES. V. 46 10840 2018 JRNL REFN ESSN 1362-4962 JRNL PMID 30239956 JRNL DOI 10.1093/NAR/GKY848 REMARK 2 REMARK 2 RESOLUTION. 3.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.91 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 18708 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.232 REMARK 3 R VALUE (WORKING SET) : 0.230 REMARK 3 FREE R VALUE : 0.271 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 949 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.9118 - 6.4927 0.95 2634 144 0.1956 0.2082 REMARK 3 2 6.4927 - 5.1551 0.98 2563 135 0.2324 0.2833 REMARK 3 3 5.1551 - 4.5040 0.99 2559 131 0.2164 0.2536 REMARK 3 4 4.5040 - 4.0924 0.99 2516 141 0.2174 0.2747 REMARK 3 5 4.0924 - 3.7992 0.98 2489 137 0.2519 0.2872 REMARK 3 6 3.7992 - 3.5752 0.99 2493 143 0.2807 0.3571 REMARK 3 7 3.5752 - 3.3962 0.99 2505 118 0.2893 0.3722 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.430 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.620 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 67.37 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 71.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 4968 REMARK 3 ANGLE : 1.164 6753 REMARK 3 CHIRALITY : 0.063 762 REMARK 3 PLANARITY : 0.007 873 REMARK 3 DIHEDRAL : 7.375 2926 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5YF8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-SEP-17. REMARK 100 THE DEPOSITION ID IS D_1300005089. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-NOV-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18873 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.396 REMARK 200 RESOLUTION RANGE LOW (A) : 60.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : 0.12800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.52 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 5.10 REMARK 200 R MERGE FOR SHELL (I) : 0.52300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2CJQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SOKALAN CP42, PH 6.0, EVAPORATION, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 57.89200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 57.89200 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 196.94600 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 57.89200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 98.47300 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 57.89200 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 295.41900 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 57.89200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 295.41900 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 57.89200 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 98.47300 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 57.89200 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 57.89200 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 196.94600 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 57.89200 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 57.89200 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 196.94600 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 57.89200 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 295.41900 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 57.89200 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 98.47300 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 57.89200 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 98.47300 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 57.89200 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 295.41900 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 57.89200 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 57.89200 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 196.94600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 SER A 1 REMARK 465 ASN A 2 REMARK 465 TRP A 3 REMARK 465 VAL A 4 REMARK 465 MET A 5 REMARK 465 GLN A 6 REMARK 465 GLU A 7 REMARK 465 GLU A 8 REMARK 465 ASN A 9 REMARK 465 LYS A 10 REMARK 465 GLN A 11 REMARK 465 GLY A 12 REMARK 465 PRO A 89 REMARK 465 GLN A 124 REMARK 465 LEU A 125 REMARK 465 CYS A 126 REMARK 465 ARG A 127 REMARK 465 GLU A 128 REMARK 465 GLY A 129 REMARK 465 HIS A 130 REMARK 465 SER A 532 REMARK 465 SER A 533 REMARK 465 GLY A 534 REMARK 465 GLU A 535 REMARK 465 ARG A 536 REMARK 465 GLY A 537 REMARK 465 ARG A 672 REMARK 465 GLY A 673 REMARK 465 SER A 674 REMARK 465 SER A 675 REMARK 465 SER A 676 REMARK 465 HIS A 677 REMARK 465 HIS A 678 REMARK 465 HIS A 679 REMARK 465 HIS A 680 REMARK 465 HIS A 681 REMARK 465 HIS A 682 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 13 CG OD1 ND2 REMARK 470 GLU A 19 CG CD OE1 OE2 REMARK 470 GLU A 20 CG CD OE1 OE2 REMARK 470 LEU A 22 CG CD1 CD2 REMARK 470 GLN A 23 CG CD OE1 NE2 REMARK 470 GLN A 24 CG CD OE1 NE2 REMARK 470 CYS A 25 SG REMARK 470 GLN A 30 CG CD OE1 NE2 REMARK 470 ASN A 31 CG OD1 ND2 REMARK 470 THR A 33 OG1 CG2 REMARK 470 MET A 36 CG SD CE REMARK 470 GLN A 41 CG CD OE1 NE2 REMARK 470 LEU A 42 CG CD1 CD2 REMARK 470 GLN A 44 CG CD OE1 NE2 REMARK 470 ASN A 46 CG OD1 ND2 REMARK 470 THR A 50 OG1 CG2 REMARK 470 SER A 51 OG REMARK 470 PHE A 55 CG CD1 CD2 CE1 CE2 CZ REMARK 470 MET A 56 CG SD CE REMARK 470 ILE A 59 CG1 CG2 CD1 REMARK 470 ARG A 62 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 63 CG CD NE CZ NH1 NH2 REMARK 470 THR A 64 OG1 CG2 REMARK 470 LYS A 65 CG CD CE NZ REMARK 470 THR A 66 OG1 CG2 REMARK 470 VAL A 73 CG1 CG2 REMARK 470 LYS A 83 CG CD CE NZ REMARK 470 THR A 86 OG1 CG2 REMARK 470 LEU A 87 CG CD1 CD2 REMARK 470 SER A 91 OG REMARK 470 LEU A 93 CG CD1 CD2 REMARK 470 LYS A 95 CG CD CE NZ REMARK 470 ASP A 98 CG OD1 OD2 REMARK 470 ILE A 101 CG1 CG2 CD1 REMARK 470 LYS A 103 CG CD CE NZ REMARK 470 LYS A 105 CG CD CE NZ REMARK 470 GLN A 107 CG CD OE1 NE2 REMARK 470 LYS A 120 CG CD CE NZ REMARK 470 GLU A 123 CG CD OE1 OE2 REMARK 470 ARG A 131 CG CD NE CZ NH1 NH2 REMARK 470 HIS A 132 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 137 CG CD CE NZ REMARK 470 LYS A 152 CG CD CE NZ REMARK 470 VAL A 155 CG1 CG2 REMARK 470 ARG A 157 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 172 CG CD CE NZ REMARK 470 GLN A 180 CG CD OE1 NE2 REMARK 470 GLU A 201 CG CD OE1 OE2 REMARK 470 ASP A 205 CG OD1 OD2 REMARK 470 GLU A 210 CG CD OE1 OE2 REMARK 470 ARG A 214 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 218 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 219 CG CD CE NZ REMARK 470 ARG A 227 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 238 CG CD CE NZ REMARK 470 LYS A 240 CG CD CE NZ REMARK 470 LYS A 249 CG CD CE NZ REMARK 470 LYS A 250 CG CD CE NZ REMARK 470 ILE A 254 CG1 CG2 CD1 REMARK 470 LYS A 266 CG CD CE NZ REMARK 470 ARG A 267 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 272 CG OD1 OD2 REMARK 470 ARG A 285 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 291 CG CD OE1 OE2 REMARK 470 LYS A 293 CG CD CE NZ REMARK 470 LYS A 300 CG CD CE NZ REMARK 470 ILE A 313 CG1 CG2 CD1 REMARK 470 ILE A 325 CG1 CG2 CD1 REMARK 470 GLN A 337 CG CD OE1 NE2 REMARK 470 LYS A 347 CG CD CE NZ REMARK 470 LYS A 366 CG CD CE NZ REMARK 470 LYS A 371 CG CD CE NZ REMARK 470 LYS A 400 CG CD CE NZ REMARK 470 LYS A 435 CG CD CE NZ REMARK 470 ILE A 479 CG1 CG2 CD1 REMARK 470 GLU A 481 CG CD OE1 OE2 REMARK 470 LYS A 484 CG CD CE NZ REMARK 470 LYS A 486 CG CD CE NZ REMARK 470 ASP A 531 CG OD1 OD2 REMARK 470 GLU A 542 CG CD OE1 OE2 REMARK 470 GLN A 572 CG CD OE1 NE2 REMARK 470 LYS A 574 CG CD CE NZ REMARK 470 ARG A 625 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 629 CG CD CE NZ REMARK 470 LYS A 641 CG CD CE NZ REMARK 470 GLU A 642 CG CD OE1 OE2 REMARK 470 ARG A 660 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 662 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 357 NZ LYS A 475 2.11 REMARK 500 OE2 GLU A 258 NH2 ARG A 399 2.15 REMARK 500 O ASP A 492 NZ LYS A 609 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 24 -34.24 -174.25 REMARK 500 GLN A 30 109.37 -52.38 REMARK 500 ALA A 34 -148.26 -147.61 REMARK 500 GLN A 41 -8.08 -59.49 REMARK 500 ASN A 46 15.87 59.38 REMARK 500 TRP A 47 68.46 -118.31 REMARK 500 PHE A 55 63.16 -105.82 REMARK 500 SER A 60 -163.76 -79.14 REMARK 500 ARG A 62 -4.36 -151.50 REMARK 500 THR A 64 36.56 -97.62 REMARK 500 LYS A 65 19.36 58.19 REMARK 500 LYS A 83 5.41 -55.46 REMARK 500 LEU A 87 -119.43 52.98 REMARK 500 SER A 91 -154.50 -163.19 REMARK 500 SER A 92 170.85 64.58 REMARK 500 HIS A 96 -19.36 -149.84 REMARK 500 LYS A 105 -30.93 -142.01 REMARK 500 ASN A 117 73.49 -173.30 REMARK 500 ARG A 157 24.21 -146.87 REMARK 500 GLN A 159 -157.80 -92.78 REMARK 500 PRO A 182 131.42 -34.48 REMARK 500 GLU A 237 41.31 -102.42 REMARK 500 LYS A 255 73.67 -69.06 REMARK 500 LYS A 266 -17.08 -47.53 REMARK 500 ASP A 280 -4.12 -59.24 REMARK 500 LYS A 282 47.39 -90.69 REMARK 500 VAL A 301 -64.34 -98.62 REMARK 500 LYS A 309 -71.63 -58.68 REMARK 500 ASP A 345 65.63 -100.27 REMARK 500 ALA A 348 68.70 36.75 REMARK 500 LYS A 370 -175.47 -64.81 REMARK 500 GLN A 402 165.01 63.48 REMARK 500 CYS A 446 93.37 -165.62 REMARK 500 ALA A 457 -72.00 -43.10 REMARK 500 LYS A 465 4.68 -64.72 REMARK 500 THR A 480 -150.22 49.92 REMARK 500 GLU A 481 -114.18 -98.34 REMARK 500 CYS A 497 24.08 39.66 REMARK 500 SER A 512 136.29 -175.53 REMARK 500 ARG A 529 -149.52 -120.62 REMARK 500 LEU A 530 75.54 -165.26 REMARK 500 SER A 616 -37.14 -37.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 704 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 705 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 706 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 707 DBREF 5YF8 A 1 672 UNP Q5U8X5 Q5U8X5_9FLAV 3181 3852 SEQADV 5YF8 MET A 0 UNP Q5U8X5 EXPRESSION TAG SEQADV 5YF8 ALA A 471 UNP Q5U8X5 TYR 3651 ENGINEERED MUTATION SEQADV 5YF8 ALA A 472 UNP Q5U8X5 GLU 3652 ENGINEERED MUTATION SEQADV 5YF8 GLY A 673 UNP Q5U8X5 EXPRESSION TAG SEQADV 5YF8 SER A 674 UNP Q5U8X5 EXPRESSION TAG SEQADV 5YF8 SER A 675 UNP Q5U8X5 EXPRESSION TAG SEQADV 5YF8 SER A 676 UNP Q5U8X5 EXPRESSION TAG SEQADV 5YF8 HIS A 677 UNP Q5U8X5 EXPRESSION TAG SEQADV 5YF8 HIS A 678 UNP Q5U8X5 EXPRESSION TAG SEQADV 5YF8 HIS A 679 UNP Q5U8X5 EXPRESSION TAG SEQADV 5YF8 HIS A 680 UNP Q5U8X5 EXPRESSION TAG SEQADV 5YF8 HIS A 681 UNP Q5U8X5 EXPRESSION TAG SEQADV 5YF8 HIS A 682 UNP Q5U8X5 EXPRESSION TAG SEQRES 1 A 683 MET SER ASN TRP VAL MET GLN GLU GLU ASN LYS GLN GLY SEQRES 2 A 683 ASN LEU THR PRO LEU PHE GLU GLU LEU LEU GLN GLN CYS SEQRES 3 A 683 PRO PRO GLY GLY GLN ASN LYS THR ALA HIS MET VAL SER SEQRES 4 A 683 ALA TYR GLN LEU ALA GLN GLY ASN TRP MET PRO THR SER SEQRES 5 A 683 CYS HIS VAL PHE MET GLY THR ILE SER ALA ARG ARG THR SEQRES 6 A 683 LYS THR HIS PRO TYR GLU ALA TYR VAL LYS LEU ARG GLU SEQRES 7 A 683 LEU VAL GLU GLU HIS LYS MET LYS THR LEU CYS PRO GLY SEQRES 8 A 683 SER SER LEU GLY LYS HIS ASN ASP TRP ILE ILE GLY LYS SEQRES 9 A 683 ILE LYS TYR GLN GLY ASN LEU ARG THR LYS HIS MET LEU SEQRES 10 A 683 ASN PRO GLY LYS VAL ALA GLU GLN LEU CYS ARG GLU GLY SEQRES 11 A 683 HIS ARG HIS ASN VAL TYR ASN LYS THR ILE GLY SER VAL SEQRES 12 A 683 MET THR ALA THR GLY ILE ARG LEU GLU LYS LEU PRO VAL SEQRES 13 A 683 VAL ARG ALA GLN THR ASP THR THR ASN PHE HIS GLN ALA SEQRES 14 A 683 ILE ARG ASP LYS ILE ASP LYS GLU GLU ASN LEU GLN THR SEQRES 15 A 683 PRO GLY LEU HIS LYS LYS LEU MET GLU VAL PHE ASN ALA SEQRES 16 A 683 LEU LYS ARG PRO GLU LEU GLU SER SER TYR ASP ALA VAL SEQRES 17 A 683 GLU TRP GLU GLU LEU GLU ARG GLY ILE ASN ARG LYS GLY SEQRES 18 A 683 ALA ALA GLY PHE PHE GLU ARG LYS ASN ILE GLY GLU ILE SEQRES 19 A 683 LEU ASP SER GLU LYS ASN LYS VAL GLU GLU ILE ILE ASP SEQRES 20 A 683 ASN LEU LYS LYS GLY ARG ASN ILE LYS TYR TYR GLU THR SEQRES 21 A 683 ALA ILE PRO LYS ASN GLU LYS ARG ASP VAL ASN ASP ASP SEQRES 22 A 683 TRP THR ALA GLY ASP PHE VAL ASP GLU LYS LYS PRO ARG SEQRES 23 A 683 VAL ILE GLN TYR PRO GLU ALA LYS THR ARG LEU ALA ILE SEQRES 24 A 683 THR LYS VAL MET TYR LYS TRP VAL LYS GLN LYS PRO VAL SEQRES 25 A 683 VAL ILE PRO GLY TYR GLU GLY LYS THR PRO LEU PHE GLN SEQRES 26 A 683 ILE PHE ASP LYS VAL LYS LYS GLU TRP ASP GLN PHE GLN SEQRES 27 A 683 ASN PRO VAL ALA VAL SER PHE ASP THR LYS ALA TRP ASP SEQRES 28 A 683 THR GLN VAL THR THR LYS ASP LEU GLU LEU ILE LYS ASP SEQRES 29 A 683 ILE GLN LYS TYR TYR PHE LYS LYS LYS TRP HIS LYS PHE SEQRES 30 A 683 ILE ASP THR LEU THR MET HIS MET THR GLU VAL PRO VAL SEQRES 31 A 683 ILE CYS ALA ASP GLY GLU VAL TYR ILE ARG LYS GLY GLN SEQRES 32 A 683 ARG GLY SER GLY GLN PRO ASP THR SER ALA GLY ASN SER SEQRES 33 A 683 MET LEU ASN VAL LEU THR MET VAL TYR ALA PHE CYS GLU SEQRES 34 A 683 ALA THR GLY VAL PRO TYR LYS SER PHE ASP ARG VAL ALA SEQRES 35 A 683 LYS ILE HIS VAL CYS GLY ASP ASP GLY PHE LEU ILE THR SEQRES 36 A 683 GLU ARG ALA LEU GLY GLU LYS PHE ALA SER LYS GLY VAL SEQRES 37 A 683 GLN ILE LEU ALA ALA ALA GLY LYS PRO GLN LYS ILE THR SEQRES 38 A 683 GLU GLY ASP LYS MET LYS VAL ALA TYR GLN PHE ASP ASP SEQRES 39 A 683 ILE GLU PHE CYS SER HIS THR PRO ILE GLN VAL ARG TRP SEQRES 40 A 683 SER ASP ASN THR SER SER TYR MET PRO GLY ARG ASN THR SEQRES 41 A 683 THR THR ILE LEU ALA LYS MET ALA THR ARG LEU ASP SER SEQRES 42 A 683 SER GLY GLU ARG GLY THR ILE ALA TYR GLU LYS ALA VAL SEQRES 43 A 683 ALA PHE SER PHE LEU LEU MET TYR SER TRP ASN PRO LEU SEQRES 44 A 683 ILE ARG ARG ILE CYS LEU LEU VAL LEU SER THR GLU LEU SEQRES 45 A 683 GLN VAL LYS PRO GLY LYS SER THR THR TYR TYR TYR GLU SEQRES 46 A 683 GLY ASP PRO ILE SER ALA TYR LYS GLU VAL ILE GLY HIS SEQRES 47 A 683 ASN LEU PHE ASP LEU LYS ARG THR SER PHE GLU LYS LEU SEQRES 48 A 683 ALA LYS LEU ASN LEU SER MET SER VAL LEU GLY ALA TRP SEQRES 49 A 683 THR ARG HIS THR SER LYS ARG LEU LEU GLN ASP CYS VAL SEQRES 50 A 683 ASN MET GLY VAL LYS GLU GLY ASN TRP LEU VAL ASN ALA SEQRES 51 A 683 ASP ARG LEU VAL SER SER LYS THR GLY ASN ARG TYR ILE SEQRES 52 A 683 PRO GLY GLU GLY HIS THR LEU GLN GLY ARG GLY SER SER SEQRES 53 A 683 SER HIS HIS HIS HIS HIS HIS HET ACT A 701 4 HET ACT A 702 4 HET ACT A 703 4 HET ACT A 704 4 HET ACT A 705 4 HET ACT A 706 4 HET ACT A 707 4 HETNAM ACT ACETATE ION FORMUL 2 ACT 7(C2 H3 O2 1-) FORMUL 9 HOH *9(H2 O) HELIX 1 AA1 LEU A 14 GLN A 23 1 10 HELIX 2 AA2 TYR A 40 GLY A 45 1 6 HELIX 3 AA3 HIS A 67 THR A 86 1 20 HELIX 4 AA4 ASN A 97 ILE A 104 5 8 HELIX 5 AA5 ASN A 136 ALA A 145 1 10 HELIX 6 AA6 ASP A 161 ILE A 173 1 13 HELIX 7 AA7 GLY A 183 ASN A 193 1 11 HELIX 8 AA8 ARG A 197 GLU A 201 5 5 HELIX 9 AA9 GLU A 208 GLY A 215 1 8 HELIX 10 AB1 ASN A 229 SER A 236 1 8 HELIX 11 AB2 GLU A 237 GLY A 251 1 15 HELIX 12 AB3 PHE A 278 LYS A 282 5 5 HELIX 13 AB4 GLU A 291 LYS A 307 1 17 HELIX 14 AB5 PRO A 321 PHE A 323 5 3 HELIX 15 AB6 GLN A 324 ASP A 334 1 11 HELIX 16 AB7 ALA A 348 VAL A 353 5 6 HELIX 17 AB8 THR A 354 PHE A 369 1 16 HELIX 18 AB9 TRP A 373 THR A 385 1 13 HELIX 19 AC1 PRO A 408 GLY A 431 1 24 HELIX 20 AC2 TYR A 434 ASP A 438 5 5 HELIX 21 AC3 ARG A 456 LYS A 465 1 10 HELIX 22 AC4 LYS A 465 ALA A 472 1 8 HELIX 23 AC5 GLN A 490 ILE A 494 5 5 HELIX 24 AC6 ASN A 518 THR A 528 1 11 HELIX 25 AC7 ILE A 539 SER A 554 1 16 HELIX 26 AC8 ASN A 556 SER A 568 1 13 HELIX 27 AC9 ASP A 586 GLY A 596 1 11 HELIX 28 AD1 ASN A 598 PHE A 600 5 3 HELIX 29 AD2 SER A 606 GLY A 621 1 16 HELIX 30 AD3 HIS A 626 ASN A 637 1 12 HELIX 31 AD4 TRP A 645 ALA A 649 5 5 HELIX 32 AD5 ASP A 650 GLY A 658 1 9 SHEET 1 AA1 4 VAL A 286 PRO A 290 0 SHEET 2 AA1 4 GLU A 258 PRO A 262 -1 N THR A 259 O TYR A 289 SHEET 3 AA1 4 GLU A 386 CYS A 391 1 O PRO A 388 N GLU A 258 SHEET 4 AA1 4 VAL A 396 LYS A 400 -1 O TYR A 397 N VAL A 389 SHEET 1 AA2 4 ALA A 441 CYS A 446 0 SHEET 2 AA2 4 ASP A 449 GLU A 455 -1 O ILE A 453 N LYS A 442 SHEET 3 AA2 4 PRO A 339 SER A 343 -1 N VAL A 340 O THR A 454 SHEET 4 AA2 4 VAL A 487 ALA A 488 -1 O ALA A 488 N ALA A 341 SHEET 1 AA3 3 SER A 511 GLY A 516 0 SHEET 2 AA3 3 THR A 500 TRP A 506 -1 N THR A 500 O GLY A 516 SHEET 3 AA3 3 LEU A 602 THR A 605 -1 O ARG A 604 N ARG A 505 SHEET 1 AA4 2 TYR A 581 GLY A 585 0 SHEET 2 AA4 2 GLY A 666 GLN A 670 -1 O HIS A 667 N GLU A 584 SITE 1 AC1 2 GLN A 335 LYS A 442 SITE 1 AC2 2 ASP A 438 ILE A 443 SITE 1 AC3 4 SER A 92 GLY A 183 LEU A 184 HIS A 185 SITE 1 AC4 1 TYR A 316 SITE 1 AC5 5 VAL A 269 ILE A 287 TYR A 289 ARG A 295 SITE 2 AC5 5 GLY A 406 SITE 1 AC6 2 ARG A 560 THR A 605 SITE 1 AC7 4 SER A 498 ARG A 517 ASN A 518 THR A 521 CRYST1 115.784 115.784 393.892 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008637 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008637 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002539 0.00000