HEADER TRANSFERASE 22-SEP-17 5YGG TITLE CRYSTAL STRUCTURE OF FRUCTOKINASE DOUBLE-MUTANT (T261C-H108C) FROM TITLE 2 VIBRIO CHOLERAE O395 IN FRUCTOSE, ADP AND POTASSIUM ION BOUND FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: FRUCTOKINASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.7.1.4; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE SEROTYPE O1 (STRAIN ATCC 39541 SOURCE 3 / CLASSICAL OGAWA 395 / O395); SOURCE 4 ORGANISM_TAXID: 345073; SOURCE 5 STRAIN: ATCC 39541 / CLASSICAL OGAWA 395 / O395; SOURCE 6 GENE: CSCK, VC0395_0600; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS KINASE, SUGAR BINDING, DOUBLE MUTANT, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.CHATTERJEE,R.PAUL,S.NATH,U.SEN REVDAT 5 23-OCT-24 5YGG 1 REMARK REVDAT 4 22-NOV-23 5YGG 1 HETSYN REVDAT 3 29-JUL-20 5YGG 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE REVDAT 2 13-MAY-20 5YGG 1 JRNL REVDAT 1 26-SEP-18 5YGG 0 JRNL AUTH R.PAUL,S.CHATTERJEE,S.NATH,U.SEN JRNL TITL LARGE-SCALE CONFORMATIONAL CHANGES AND REDISTRIBUTION OF JRNL TITL 2 SURFACE NEGATIVE CHARGE UPON SUGAR BINDING DICTATE THE JRNL TITL 3 FIDELITY OF PHOSPHORYLATION IN VIBRIO CHOLERAE FRUCTOKINASE. JRNL REF SCI REP V. 8 16925 2018 JRNL REFN ESSN 2045-2322 JRNL PMID 30446722 JRNL DOI 10.1038/S41598-018-35236-3 REMARK 2 REMARK 2 RESOLUTION. 1.67 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.67 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.06 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 36538 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.860 REMARK 3 FREE R VALUE TEST SET COUNT : 1776 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 10.0600 - 3.9279 0.93 2720 141 0.1532 0.1578 REMARK 3 2 3.9279 - 3.1184 0.96 2672 146 0.1378 0.1680 REMARK 3 3 3.1184 - 2.7244 0.98 2651 162 0.1566 0.1900 REMARK 3 4 2.7244 - 2.4754 0.99 2667 137 0.1571 0.2089 REMARK 3 5 2.4754 - 2.2980 0.99 2706 135 0.1521 0.1927 REMARK 3 6 2.2980 - 2.1625 0.99 2724 119 0.1567 0.1882 REMARK 3 7 2.1625 - 2.0542 1.00 2681 139 0.1579 0.1699 REMARK 3 8 2.0542 - 1.9648 1.00 2655 132 0.1594 0.2068 REMARK 3 9 1.9648 - 1.8892 1.00 2704 130 0.1868 0.2308 REMARK 3 10 1.8892 - 1.8240 1.00 2691 115 0.1926 0.2339 REMARK 3 11 1.8240 - 1.7670 1.00 2695 133 0.2001 0.2703 REMARK 3 12 1.7670 - 1.7165 1.00 2666 157 0.2239 0.2708 REMARK 3 13 1.7165 - 1.6713 0.96 2530 130 0.2671 0.2902 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.980 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 2438 REMARK 3 ANGLE : 1.115 3314 REMARK 3 CHIRALITY : 0.045 378 REMARK 3 PLANARITY : 0.006 430 REMARK 3 DIHEDRAL : 14.281 855 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 14 THROUGH 38 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.9481 26.0423 132.2808 REMARK 3 T TENSOR REMARK 3 T11: 0.0724 T22: 0.0893 REMARK 3 T33: 0.0910 T12: -0.0097 REMARK 3 T13: 0.0230 T23: 0.0425 REMARK 3 L TENSOR REMARK 3 L11: 1.4662 L22: 1.2212 REMARK 3 L33: 1.1820 L12: -0.2047 REMARK 3 L13: 0.6762 L23: -0.0656 REMARK 3 S TENSOR REMARK 3 S11: 0.1035 S12: -0.0462 S13: -0.0448 REMARK 3 S21: 0.0233 S22: 0.0484 S23: 0.1300 REMARK 3 S31: 0.0921 S32: -0.1749 S33: -0.1695 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 39 THROUGH 211 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.2641 23.5305 131.2492 REMARK 3 T TENSOR REMARK 3 T11: 0.0627 T22: 0.0540 REMARK 3 T33: 0.0565 T12: -0.0044 REMARK 3 T13: -0.0059 T23: 0.0113 REMARK 3 L TENSOR REMARK 3 L11: 0.9368 L22: 0.7268 REMARK 3 L33: 0.8695 L12: -0.1498 REMARK 3 L13: -0.1881 L23: -0.2460 REMARK 3 S TENSOR REMARK 3 S11: 0.0494 S12: 0.0756 S13: 0.0369 REMARK 3 S21: -0.0388 S22: -0.0269 S23: 0.0059 REMARK 3 S31: -0.0211 S32: 0.0110 S33: -0.0141 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 212 THROUGH 323 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.9341 9.5872 138.0990 REMARK 3 T TENSOR REMARK 3 T11: 0.1061 T22: 0.0885 REMARK 3 T33: 0.1161 T12: 0.0034 REMARK 3 T13: -0.0157 T23: 0.0105 REMARK 3 L TENSOR REMARK 3 L11: 1.0804 L22: 0.8716 REMARK 3 L33: 0.5015 L12: -0.3208 REMARK 3 L13: 0.2104 L23: -0.5019 REMARK 3 S TENSOR REMARK 3 S11: 0.0599 S12: 0.0289 S13: -0.1792 REMARK 3 S21: -0.0740 S22: -0.0141 S23: 0.0409 REMARK 3 S31: 0.1155 S32: -0.0165 S33: -0.0355 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5YGG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-SEP-17. REMARK 100 THE DEPOSITION ID IS D_1300005195. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-JUN-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36538 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.670 REMARK 200 RESOLUTION RANGE LOW (A) : 33.920 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 5EY7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 6000, CALCIUM CHLORIDE, ADP, REMARK 280 FRUCTOSE, POTASSIUM CHLORIDE, PH 6, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.16500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.20000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.16500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 58.20000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 64.33000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 232.80000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 966 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 982 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 ALA A 3 REMARK 465 LEU A 4 REMARK 465 VAL A 5 REMARK 465 ARG A 6 REMARK 465 LEU A 7 REMARK 465 SER A 8 REMARK 465 SER A 9 REMARK 465 ASN A 10 REMARK 465 HIS A 11 REMARK 465 ILE A 12 REMARK 465 PHE A 13 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 14 CG CD NE CZ NH1 NH2 REMARK 470 SER A 15 OG REMARK 470 ASP A 16 CG OD1 OD2 REMARK 470 SER A 17 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 801 O HOH A 946 1.90 REMARK 500 OE2 GLU A 323 O HOH A 701 2.00 REMARK 500 O HOH A 1005 O HOH A 1006 2.09 REMARK 500 O HOH A 994 O HOH A 1002 2.13 REMARK 500 O HOH A 747 O HOH A 874 2.17 REMARK 500 O HOH A 791 O HOH A 1020 2.17 REMARK 500 O HOH A 999 O HOH A 1029 2.18 REMARK 500 SG CYS A 42 O HOH A 969 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 746 O HOH A 878 3557 1.88 REMARK 500 O HOH A 732 O HOH A 886 1655 2.03 REMARK 500 O HOH A 931 O HOH A 990 2567 2.12 REMARK 500 O HOH A 894 O HOH A 1001 3657 2.13 REMARK 500 O HOH A 900 O HOH A 958 3557 2.14 REMARK 500 O HOH A 1010 O HOH A 1031 1455 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 36 94.73 -47.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 35 GLN A 36 -147.69 REMARK 500 GLN A 36 GLN A 37 110.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 603 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 174 OD1 REMARK 620 2 ADP A 601 O2B 165.6 REMARK 620 3 HOH A 753 O 93.2 99.1 REMARK 620 4 HOH A 758 O 86.2 103.2 80.2 REMARK 620 5 HOH A 892 O 74.4 99.2 84.4 154.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 604 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 260 O REMARK 620 2 ASP A 260 OD2 76.5 REMARK 620 3 THR A 262 O 84.9 92.4 REMARK 620 4 ALA A 302 O 92.8 160.6 102.9 REMARK 620 5 GLN A 305 O 99.0 78.9 169.2 87.0 REMARK 620 6 GLY A 307 O 161.6 86.1 90.1 105.5 83.0 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5EY7 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF FRUCTOKINASE FROM VIBRIO CHOLERAE O395 IN APO REMARK 900 FORM REMARK 900 RELATED ID: 5F11 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF FRUCTOKINASE FROM VIBRIO CHOLERAE O395 IN REMARK 900 FRUCTOSE BOUND FORM REMARK 900 RELATED ID: 5EYN RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF FRUCTOKINASE FROM VIBRIO CHOLERAE O395 IN REMARK 900 FRUCTOSE, ADP, BERYLLIUM TRIFLUORIDE AND CALCIUM ION BOUND FORM REMARK 900 RELATED ID: 5F0Z RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF FRUCTOKINASE FROM VIBRIO CHOLERAE O395 IN REMARK 900 FRUCTOSE, ADP AND CALCIUM ION BOUND FORM DBREF1 5YGG A 1 323 UNP A0A0H3AER7_VIBC3 DBREF2 5YGG A A0A0H3AER7 1 323 SEQADV 5YGG CYS A 108 UNP A0A0H3AER HIS 108 ENGINEERED MUTATION SEQADV 5YGG CYS A 261 UNP A0A0H3AER THR 261 ENGINEERED MUTATION SEQRES 1 A 323 MET LYS ALA LEU VAL ARG LEU SER SER ASN HIS ILE PHE SEQRES 2 A 323 ARG SER ASP SER MET SER ARG VAL TRP LEU THR GLY ASP SEQRES 3 A 323 ALA VAL VAL ASP LEU ILE PRO ASP GLY GLN GLN HIS TYR SEQRES 4 A 323 LEU LYS CYS PRO GLY GLY ALA PRO ALA ASN VAL ALA VAL SEQRES 5 A 323 ALA ILE ALA ARG LEU SER GLY ARG SER ALA PHE PHE GLY SEQRES 6 A 323 ARG VAL GLY ASN ASP PRO PHE GLY ARG PHE MET GLN GLN SEQRES 7 A 323 THR LEU THR ASP GLU GLN VAL ASP CYS GLN HIS LEU HIS SEQRES 8 A 323 PHE ASP PRO VAL HIS ARG THR SER THR VAL VAL VAL ASP SEQRES 9 A 323 LEU ASP GLU CYS GLY GLU ARG SER PHE THR PHE MET VAL SEQRES 10 A 323 LYS PRO SER ALA ASP GLN PHE LEU GLN LEU SER ASP ILE SEQRES 11 A 323 PRO SER PHE GLN LYS GLY GLU TRP LEU HIS VAL CYS SER SEQRES 12 A 323 ILE ALA LEU ALA ASN GLN PRO SER ARG SER SER THR PHE SEQRES 13 A 323 ALA ALA ILE ALA GLN MET LYS GLU VAL GLY GLY TYR VAL SEQRES 14 A 323 SER PHE ASP PRO ASN LEU ARG GLU GLU VAL TRP SER GLU SEQRES 15 A 323 PRO GLN GLU LEU GLN ALA THR VAL MET ARG ALA VAL GLY SEQRES 16 A 323 LEU ALA ASP VAL VAL LYS PHE SER GLU GLU GLU LEU GLN SEQRES 17 A 323 PHE LEU THR GLY THR GLN SER ILE GLU GLU GLY LEU GLN SEQRES 18 A 323 ALA ILE ALA ASP PHE GLN ILE PRO LEU VAL VAL VAL THR SEQRES 19 A 323 LEU GLY ALA LYS GLY ALA LEU VAL ALA THR PRO ASN SER SEQRES 20 A 323 GLN GLN ILE VAL SER GLY LYS ALA VAL LYS PRO ILE ASP SEQRES 21 A 323 CYS THR GLY ALA GLY ASP ALA PHE VAL GLY GLY LEU LEU SEQRES 22 A 323 TYR ARG LEU SER VAL ALA GLN ASP TRP HIS ASN GLN ALA SEQRES 23 A 323 THR ILE LEU ASP ALA VAL LYS TRP ALA ASN GLY CYS GLY SEQRES 24 A 323 ALA LEU ALA THR THR GLN LYS GLY ALA MET THR ALA LEU SEQRES 25 A 323 PRO ASN GLN ALA ALA LEU TYR ALA PHE LEU GLU HET ADP A 601 27 HET FRU A 602 12 HET CA A 603 1 HET K A 604 1 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM FRU BETA-D-FRUCTOFURANOSE HETNAM CA CALCIUM ION HETNAM K POTASSIUM ION HETSYN FRU BETA-D-FRUCTOSE; D-FRUCTOSE; FRUCTOSE FORMUL 2 ADP C10 H15 N5 O10 P2 FORMUL 3 FRU C6 H12 O6 FORMUL 4 CA CA 2+ FORMUL 5 K K 1+ FORMUL 6 HOH *342(H2 O) HELIX 1 AA1 GLY A 45 LEU A 57 1 13 HELIX 2 AA2 ASP A 70 GLU A 83 1 14 HELIX 3 AA3 CYS A 108 ARG A 111 5 4 HELIX 4 AA4 SER A 120 LEU A 125 5 6 HELIX 5 AA5 GLN A 126 ILE A 130 5 5 HELIX 6 AA6 ILE A 144 ALA A 147 5 4 HELIX 7 AA7 PRO A 150 GLY A 166 1 17 HELIX 8 AA8 ARG A 176 TRP A 180 5 5 HELIX 9 AA9 GLU A 182 GLN A 184 5 3 HELIX 10 AB1 GLU A 185 GLY A 195 1 11 HELIX 11 AB2 GLU A 204 GLY A 212 1 9 HELIX 12 AB3 SER A 215 ILE A 223 1 9 HELIX 13 AB4 ALA A 224 GLN A 227 5 4 HELIX 14 AB5 GLY A 236 LYS A 238 5 3 HELIX 15 AB6 GLY A 263 ALA A 279 1 17 HELIX 16 AB7 ASN A 284 THR A 303 1 20 HELIX 17 AB8 ASN A 314 GLU A 323 1 10 SHEET 1 AA1 9 ASP A 86 ASP A 93 0 SHEET 2 AA1 9 SER A 61 GLY A 68 1 N GLY A 65 O HIS A 91 SHEET 3 AA1 9 VAL A 21 THR A 24 1 N LEU A 23 O ALA A 62 SHEET 4 AA1 9 TRP A 138 CYS A 142 1 O TRP A 138 N TRP A 22 SHEET 5 AA1 9 TYR A 168 ASP A 172 1 O SER A 170 N LEU A 139 SHEET 6 AA1 9 VAL A 199 SER A 203 1 O VAL A 199 N PHE A 171 SHEET 7 AA1 9 LEU A 230 THR A 234 1 O VAL A 232 N PHE A 202 SHEET 8 AA1 9 ALA A 240 THR A 244 -1 O ALA A 243 N VAL A 231 SHEET 9 AA1 9 SER A 247 VAL A 251 -1 O GLN A 249 N VAL A 242 SHEET 1 AA2 4 TYR A 39 GLY A 44 0 SHEET 2 AA2 4 VAL A 28 PRO A 33 -1 N ILE A 32 O LEU A 40 SHEET 3 AA2 4 SER A 99 VAL A 103 1 O VAL A 101 N LEU A 31 SHEET 4 AA2 4 PHE A 113 PHE A 115 -1 O THR A 114 N VAL A 102 SSBOND 1 CYS A 108 CYS A 261 1555 1555 2.04 LINK OD1 ASN A 174 CA CA A 603 1555 1555 2.48 LINK O ASP A 260 K K A 604 1555 1555 2.82 LINK OD2 ASP A 260 K K A 604 1555 1555 2.94 LINK O THR A 262 K K A 604 1555 1555 2.80 LINK O ALA A 302 K K A 604 1555 1555 2.71 LINK O GLN A 305 K K A 604 1555 1555 2.67 LINK O GLY A 307 K K A 604 1555 1555 2.72 LINK O2B ADP A 601 CA CA A 603 1555 1555 2.76 LINK CA CA A 603 O HOH A 753 1555 1555 2.77 LINK CA CA A 603 O HOH A 758 1555 1555 2.62 LINK CA CA A 603 O HOH A 892 1555 1555 2.59 CISPEP 1 LYS A 118 PRO A 119 0 -1.69 CISPEP 2 GLN A 149 PRO A 150 0 4.05 CRYST1 41.760 64.330 116.400 90.00 90.00 90.00 P 2 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023946 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015545 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008591 0.00000