HEADER METAL BINDING PROTEIN 27-SEP-17 5YH5 TITLE THE CRYSTAL STRUCTURE OF STAPHYLOCOCCUS AUREUS CNTA IN APO FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: NICKEL ABC TRANSPORTER SUBSTRATE-BINDING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 26-532; COMPND 5 SYNONYM: NICKEL ABC TRANSPORTER,PERIPLASMIC NICKEL-BINDING PROTEIN, COMPND 6 OLIGOPEPTIDE TRANSPORTER PUTATIVE SUBSTRATE BINDING DOMAIN PROTEIN; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 GENE: OPP-1A, AYM28_13740, AYM37_13740, ERS072738_00487, SOURCE 5 ERS074020_00717, HMPREF3211_02361; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS STAPHYLOCOCCUS AUREUS, RECEPTOR, METAL BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR L.SONG,Q.JI REVDAT 4 27-MAR-24 5YH5 1 REMARK REVDAT 3 25-APR-18 5YH5 1 COMPND JRNL HETNAM REVDAT 2 11-APR-18 5YH5 1 COMPND JRNL HETNAM REVDAT 1 28-MAR-18 5YH5 0 JRNL AUTH L.SONG,Y.ZHANG,W.CHEN,T.GU,S.Y.ZHANG,Q.JI JRNL TITL MECHANISTIC INSIGHTS INTO STAPHYLOPINE-MEDIATED METAL JRNL TITL 2 ACQUISITION JRNL REF PROC. NATL. ACAD. SCI. V. 115 3942 2018 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 29581261 JRNL DOI 10.1073/PNAS.1718382115 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 14596 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 770 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.98 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1076 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.47 REMARK 3 BIN R VALUE (WORKING SET) : 0.3150 REMARK 3 BIN FREE R VALUE SET COUNT : 58 REMARK 3 BIN FREE R VALUE : 0.3260 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4008 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 19 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 86.53 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.23000 REMARK 3 B22 (A**2) : 1.23000 REMARK 3 B33 (A**2) : -3.98000 REMARK 3 B12 (A**2) : 0.61000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.409 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.387 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 48.325 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.918 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4095 ; 0.017 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 3922 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5489 ; 2.046 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9106 ; 1.151 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 501 ; 8.135 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 195 ;43.889 ;26.103 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 793 ;20.001 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;17.867 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 583 ; 0.113 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4600 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 870 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2010 ; 3.547 ; 6.237 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2009 ; 3.547 ; 6.238 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2509 ; 5.571 ; 9.353 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2510 ; 5.570 ; 9.352 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2085 ; 3.486 ; 6.633 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2085 ; 3.471 ; 6.633 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2981 ; 5.857 ; 9.759 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4682 ; 8.412 ;49.055 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4683 ; 8.411 ;49.062 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 506 REMARK 3 ORIGIN FOR THE GROUP (A): 23.9750 183.1338 -11.2866 REMARK 3 T TENSOR REMARK 3 T11: 0.1407 T22: 0.3403 REMARK 3 T33: 0.0267 T12: -0.1024 REMARK 3 T13: 0.0324 T23: -0.0569 REMARK 3 L TENSOR REMARK 3 L11: 1.0674 L22: 0.6560 REMARK 3 L33: 0.8399 L12: 0.7639 REMARK 3 L13: -0.3315 L23: -0.4723 REMARK 3 S TENSOR REMARK 3 S11: -0.0410 S12: 0.2924 S13: -0.0788 REMARK 3 S21: 0.0584 S22: 0.1342 S23: -0.0098 REMARK 3 S31: -0.0530 S32: 0.0866 S33: -0.0932 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 SF FILE CONTAINS FRIEDEL PAIRS UNDER I/F_MINUS AND I/F_PLUS REMARK 3 COLUMNS. REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 5YH5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-SEP-17. REMARK 100 THE DEPOSITION ID IS D_1300005259. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JAN-17 REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL18U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9778 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15367 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 20.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: THE ENTRY CONTAINS FRIEDEL PAIRS IN F_PLUS/MINUS COLUMNS. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES MONOHYDRATE PH 5.5, 25% REMARK 280 (V/V) POLYETHYLENE GLYCOL 400, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 17.87833 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 35.75667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 26.81750 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 44.69583 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 8.93917 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 334 REMARK 465 GLY A 335 REMARK 465 LYS A 336 REMARK 465 LYS A 507 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 495 OE2 GLU A 498 1.56 REMARK 500 O GLU A 3 OE2 GLU A 7 1.79 REMARK 500 OG SER A 261 O ALA A 428 1.83 REMARK 500 OD1 ASP A 223 OG1 THR A 227 1.95 REMARK 500 CE1 TYR A 353 NH1 ARG A 392 2.07 REMARK 500 CB SER A 495 OE2 GLU A 498 2.08 REMARK 500 CZ TYR A 353 NH1 ARG A 392 2.12 REMARK 500 CG2 VAL A 113 O GLU A 122 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 9 71.01 57.24 REMARK 500 LEU A 52 116.10 164.29 REMARK 500 LEU A 53 -27.64 74.42 REMARK 500 ASP A 62 -19.63 -48.91 REMARK 500 LYS A 64 22.39 -140.72 REMARK 500 ARG A 71 139.19 -29.07 REMARK 500 ASP A 73 5.74 -67.25 REMARK 500 LYS A 98 -35.32 -33.60 REMARK 500 LEU A 109 68.76 -65.86 REMARK 500 ASN A 112 -179.37 -172.65 REMARK 500 ASP A 117 -171.20 -179.77 REMARK 500 TYR A 129 106.92 -160.70 REMARK 500 THR A 155 -59.96 -127.49 REMARK 500 LYS A 156 153.47 -42.01 REMARK 500 ASP A 157 -61.96 86.55 REMARK 500 PHE A 162 72.89 -109.76 REMARK 500 GLU A 177 -51.36 -127.91 REMARK 500 GLU A 190 91.39 -54.08 REMARK 500 ALA A 204 178.33 -58.05 REMARK 500 ASP A 224 9.14 -68.71 REMARK 500 ASN A 253 -172.70 175.76 REMARK 500 ASP A 308 5.45 55.62 REMARK 500 ASN A 310 59.52 -110.81 REMARK 500 MET A 313 69.30 -161.38 REMARK 500 ASP A 319 113.58 -161.37 REMARK 500 GLU A 329 -10.19 -46.99 REMARK 500 GLN A 342 128.01 -170.90 REMARK 500 ASN A 403 -172.66 -173.91 REMARK 500 LYS A 420 28.22 -140.05 REMARK 500 ASN A 423 32.62 -98.73 REMARK 500 GLU A 433 124.75 -28.32 REMARK 500 ILE A 474 -56.20 -126.09 REMARK 500 ASP A 486 32.17 -96.50 REMARK 500 THR A 493 -157.59 -128.84 REMARK 500 SER A 495 141.32 177.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 604 DBREF1 5YH5 A 1 507 UNP A0A068A9N4_STAAU DBREF2 5YH5 A A0A068A9N4 26 532 SEQRES 1 A 507 GLY LEU GLU GLU LYS LYS GLU ASN LYS GLN LEU THR TYR SEQRES 2 A 507 THR THR VAL LYS ASP ILE GLY ASP MET ASN PRO HIS VAL SEQRES 3 A 507 TYR GLY GLY SER MET SER ALA GLU SER MET ILE TYR GLU SEQRES 4 A 507 PRO LEU VAL ARG ASN THR LYS ASP GLY ILE LYS PRO LEU SEQRES 5 A 507 LEU ALA LYS LYS TRP ASP VAL SER GLU ASP GLY LYS THR SEQRES 6 A 507 TYR THR PHE HIS LEU ARG ASP ASP VAL LYS PHE HIS ASP SEQRES 7 A 507 GLY THR PRO PHE ASP ALA ASP ALA VAL LYS LYS ASN ILE SEQRES 8 A 507 ASP ALA VAL GLN GLU ASN LYS LYS LEU HIS SER TRP LEU SEQRES 9 A 507 LYS ILE SER THR LEU ILE ASP ASN VAL LYS VAL LYS ASP SEQRES 10 A 507 LYS TYR THR VAL GLU LEU ASN LEU LYS GLU ALA TYR GLN SEQRES 11 A 507 PRO ALA LEU ALA GLU LEU ALA MET PRO ARG PRO TYR VAL SEQRES 12 A 507 PHE VAL SER PRO LYS ASP PHE LYS ASN GLY THR THR LYS SEQRES 13 A 507 ASP GLY VAL LYS LYS PHE ASP GLY THR GLY PRO PHE LYS SEQRES 14 A 507 LEU GLY GLU HIS LYS LYS ASP GLU SER ALA ASP PHE ASN SEQRES 15 A 507 LYS ASN ASP GLN TYR TRP GLY GLU LYS SER LYS LEU ASN SEQRES 16 A 507 LYS VAL GLN ALA LYS VAL MET PRO ALA GLY GLU THR ALA SEQRES 17 A 507 PHE LEU SER MET LYS LYS GLY GLU THR ASN PHE ALA PHE SEQRES 18 A 507 THR ASP ASP ARG GLY THR ASP SER LEU ASP LYS ASP SER SEQRES 19 A 507 LEU LYS GLN LEU LYS ASP THR GLY ASP TYR GLN VAL LYS SEQRES 20 A 507 ARG SER GLN PRO MET ASN THR LYS MET LEU VAL VAL ASN SEQRES 21 A 507 SER GLY LYS LYS ASP ASN ALA VAL SER ASP LYS THR VAL SEQRES 22 A 507 ARG GLN ALA ILE GLY HIS MET VAL ASN ARG ASP LYS ILE SEQRES 23 A 507 ALA LYS GLU ILE LEU ASP GLY GLN GLU LYS PRO ALA THR SEQRES 24 A 507 GLN LEU PHE ALA LYS ASN VAL THR ASP ILE ASN PHE ASP SEQRES 25 A 507 MET PRO THR ARG LYS TYR ASP LEU LYS LYS ALA GLU SER SEQRES 26 A 507 LEU LEU ASP GLU ALA GLY TRP LYS LYS GLY LYS ASP SER SEQRES 27 A 507 ASP VAL ARG GLN LYS ASP GLY LYS ASN LEU GLU MET ALA SEQRES 28 A 507 MET TYR TYR ASP LYS GLY SER SER SER GLN LYS GLU GLN SEQRES 29 A 507 ALA GLU TYR LEU GLN ALA GLU PHE LYS LYS MET GLY ILE SEQRES 30 A 507 LYS LEU ASN ILE ASN GLY GLU THR SER ASP LYS ILE ALA SEQRES 31 A 507 GLU ARG ARG THR SER GLY ASP TYR ASP LEU MET PHE ASN SEQRES 32 A 507 GLN THR TRP GLY LEU LEU TYR ASP PRO GLN SER THR ILE SEQRES 33 A 507 ALA ALA PHE LYS ALA LYS ASN GLY TYR GLU SER ALA THR SEQRES 34 A 507 SER GLY ILE GLU ASN LYS ASP LYS ILE TYR ASN SER ILE SEQRES 35 A 507 ASP ASP ALA PHE LYS ILE GLN ASN GLY LYS GLU ARG SER SEQRES 36 A 507 ASP ALA TYR LYS ASN ILE LEU LYS GLN ILE ASP ASP GLU SEQRES 37 A 507 GLY ILE PHE ILE PRO ILE SER HIS GLY SER MET THR VAL SEQRES 38 A 507 VAL ALA PRO LYS ASP LEU GLU LYS VAL SER PHE THR GLN SEQRES 39 A 507 SER GLN TYR GLU LEU PRO PHE ASN GLU MET GLN TYR LYS HET EDO A 601 4 HET EDO A 602 4 HET EDO A 603 4 HET PEG A 604 7 HETNAM EDO 1,2-ETHANEDIOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN EDO ETHYLENE GLYCOL FORMUL 2 EDO 3(C2 H6 O2) FORMUL 5 PEG C4 H10 O3 HELIX 1 AA1 GLY A 1 ASN A 8 1 8 HELIX 2 AA2 SER A 30 TYR A 38 1 9 HELIX 3 AA3 ASP A 83 ASN A 97 1 15 HELIX 4 AA4 ASN A 97 SER A 102 1 6 HELIX 5 AA5 LEU A 104 LEU A 109 1 6 HELIX 6 AA6 PRO A 131 ALA A 137 1 7 HELIX 7 AA7 SER A 146 PHE A 150 5 5 HELIX 8 AA8 GLY A 205 LYS A 214 1 10 HELIX 9 AA9 ASP A 231 THR A 241 1 11 HELIX 10 AB1 ASN A 266 SER A 269 5 4 HELIX 11 AB2 ASP A 270 GLY A 278 1 9 HELIX 12 AB3 ASN A 282 ILE A 290 1 9 HELIX 13 AB4 ASP A 319 GLU A 329 1 11 HELIX 14 AB5 SER A 358 MET A 375 1 18 HELIX 15 AB6 THR A 385 SER A 395 1 11 HELIX 16 AB7 PRO A 412 ALA A 418 1 7 HELIX 17 AB8 PHE A 419 ALA A 421 5 3 HELIX 18 AB9 TYR A 425 SER A 430 1 6 HELIX 19 AC1 ASN A 434 PHE A 446 1 13 HELIX 20 AC2 ASN A 450 GLU A 468 1 19 SHEET 1 AA1 4 GLN A 10 THR A 15 0 SHEET 2 AA1 4 LYS A 196 VAL A 201 1 O GLN A 198 N TYR A 13 SHEET 3 AA1 4 SER A 178 LYS A 183 -1 N PHE A 181 O VAL A 197 SHEET 4 AA1 4 PHE A 168 LYS A 174 -1 N LYS A 169 O ASN A 182 SHEET 1 AA2 2 VAL A 42 THR A 45 0 SHEET 2 AA2 2 GLY A 48 PRO A 51 -1 O LYS A 50 N ARG A 43 SHEET 1 AA3 4 LYS A 56 VAL A 59 0 SHEET 2 AA3 4 THR A 65 HIS A 69 -1 O THR A 67 N ASP A 58 SHEET 3 AA3 4 THR A 120 ASN A 124 -1 O LEU A 123 N TYR A 66 SHEET 4 AA3 4 ASN A 112 ASP A 117 -1 N LYS A 114 O GLU A 122 SHEET 1 AA4 3 ALA A 220 PHE A 221 0 SHEET 2 AA4 3 SER A 478 PRO A 484 -1 O VAL A 482 N ALA A 220 SHEET 3 AA4 3 TYR A 244 PRO A 251 -1 N GLN A 245 O ALA A 483 SHEET 1 AA5 6 LYS A 296 PRO A 297 0 SHEET 2 AA5 6 PHE A 471 HIS A 476 -1 O HIS A 476 N LYS A 296 SHEET 3 AA5 6 LYS A 255 VAL A 259 -1 N LYS A 255 O SER A 475 SHEET 4 AA5 6 LEU A 400 GLN A 404 -1 O ASN A 403 N MET A 256 SHEET 5 AA5 6 GLU A 349 ASP A 355 1 N TYR A 353 O LEU A 400 SHEET 6 AA5 6 LYS A 378 GLU A 384 1 O GLU A 384 N TYR A 354 SHEET 1 AA6 2 GLN A 342 LYS A 343 0 SHEET 2 AA6 2 LYS A 346 ASN A 347 -1 O LYS A 346 N LYS A 343 CISPEP 1 ARG A 140 PRO A 141 0 -0.59 CISPEP 2 ASP A 411 PRO A 412 0 -4.31 SITE 1 AC1 2 ARG A 393 GLN A 404 SITE 1 AC2 1 TRP A 57 SITE 1 AC3 2 TRP A 188 GLY A 189 SITE 1 AC4 2 ARG A 140 TYR A 410 CRYST1 149.395 149.395 53.635 90.00 90.00 120.00 P 61 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006694 0.003865 0.000000 0.00000 SCALE2 0.000000 0.007729 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018645 0.00000