HEADER MEMBRANE PROTEIN 28-SEP-17 5YHG TITLE THE CRYSTAL STRUCTURE OF STAPHYLOCOCCUS AUREUS CNTA IN COMPLEX WITH TITLE 2 STAPHYLOPINE AND ZINC COMPND MOL_ID: 1; COMPND 2 MOLECULE: NICKEL ABC TRANSPORTER SUBSTRATE-BINDING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 GENE: OPP-1A, AYM28_13740, AYM37_13740, ERS072738_00487, SOURCE 5 ERS074020_00717, HMPREF3211_02361; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RECEPTOR, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Q.JI,L.SONG REVDAT 4 27-MAR-24 5YHG 1 REMARK REVDAT 3 25-APR-18 5YHG 1 JRNL REVDAT 2 11-APR-18 5YHG 1 JRNL REVDAT 1 28-MAR-18 5YHG 0 JRNL AUTH L.SONG,Y.ZHANG,W.CHEN,T.GU,S.Y.ZHANG,Q.JI JRNL TITL MECHANISTIC INSIGHTS INTO STAPHYLOPINE-MEDIATED METAL JRNL TITL 2 ACQUISITION JRNL REF PROC. NATL. ACAD. SCI. V. 115 3942 2018 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 29581261 JRNL DOI 10.1073/PNAS.1718382115 REMARK 2 REMARK 2 RESOLUTION. 2.03 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.03 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 78.30 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 35917 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1886 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.03 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.08 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2459 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.48 REMARK 3 BIN R VALUE (WORKING SET) : 0.2560 REMARK 3 BIN FREE R VALUE SET COUNT : 122 REMARK 3 BIN FREE R VALUE : 0.2490 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4039 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 66 REMARK 3 SOLVENT ATOMS : 344 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.93000 REMARK 3 B22 (A**2) : -4.78000 REMARK 3 B33 (A**2) : 1.86000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.163 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.155 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.127 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.909 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.975 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.954 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4169 ; 0.018 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 4001 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5580 ; 1.906 ; 1.974 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9296 ; 1.093 ; 3.002 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 506 ; 6.662 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 195 ;41.345 ;26.103 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 805 ;15.178 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;10.562 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 594 ; 0.124 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4649 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 878 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2031 ; 3.409 ; 4.206 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2030 ; 3.402 ; 4.204 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2534 ; 4.350 ; 6.286 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2535 ; 4.349 ; 6.286 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2138 ; 4.807 ; 4.690 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2139 ; 4.806 ; 4.690 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3047 ; 6.918 ; 6.790 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5015 ; 8.116 ;34.051 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5016 ; 8.120 ;34.057 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5YHG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 29-SEP-17. REMARK 100 THE DEPOSITION ID IS D_1300005277. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAR-17 REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL18U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9778 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37675 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.030 REMARK 200 RESOLUTION RANGE LOW (A) : 78.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 12.10 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BICINE PH 8.5, 8%(W/V) REMARK 280 POLYETHYLENE GLYCOL MONOMETHYL ETHER 5000, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 287K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 43.03500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 78.17450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 43.03500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 78.17450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 316 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 52 -111.48 -145.34 REMARK 500 TYR A 129 101.63 -167.69 REMARK 500 PRO A 131 1.41 -70.00 REMARK 500 PHE A 162 54.97 -119.90 REMARK 500 GLU A 177 -64.87 -132.30 REMARK 500 ASN A 218 23.86 -143.72 REMARK 500 ILE A 309 -86.29 -95.92 REMARK 500 ASP A 319 92.71 -168.62 REMARK 500 LYS A 334 -88.25 -72.46 REMARK 500 ASP A 337 -74.20 -23.88 REMARK 500 TYR A 398 148.84 -173.04 REMARK 500 ASN A 434 31.13 -89.07 REMARK 500 ILE A 474 -60.70 -124.78 REMARK 500 THR A 493 -166.55 -100.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1044 DISTANCE = 6.04 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 8UX A 608 O REMARK 620 2 8UX A 608 NAP 103.7 REMARK 620 3 8UX A 608 OAD 92.6 93.3 REMARK 620 4 8UX A 608 N 77.9 172.5 94.0 REMARK 620 5 8UX A 608 OAC 92.9 96.8 167.1 75.8 REMARK 620 6 8UX A 608 NAN 170.4 84.5 81.7 94.7 91.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 607 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 8UX A 608 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 609 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 610 DBREF1 5YHG A 1 507 UNP A0A068A9N4_STAAU DBREF2 5YHG A A0A068A9N4 26 532 SEQADV 5YHG MET A 0 UNP A0A068A9N INITIATING METHIONINE SEQRES 1 A 508 MET GLY LEU GLU GLU LYS LYS GLU ASN LYS GLN LEU THR SEQRES 2 A 508 TYR THR THR VAL LYS ASP ILE GLY ASP MET ASN PRO HIS SEQRES 3 A 508 VAL TYR GLY GLY SER MET SER ALA GLU SER MET ILE TYR SEQRES 4 A 508 GLU PRO LEU VAL ARG ASN THR LYS ASP GLY ILE LYS PRO SEQRES 5 A 508 LEU LEU ALA LYS LYS TRP ASP VAL SER GLU ASP GLY LYS SEQRES 6 A 508 THR TYR THR PHE HIS LEU ARG ASP ASP VAL LYS PHE HIS SEQRES 7 A 508 ASP GLY THR PRO PHE ASP ALA ASP ALA VAL LYS LYS ASN SEQRES 8 A 508 ILE ASP ALA VAL GLN GLU ASN LYS LYS LEU HIS SER TRP SEQRES 9 A 508 LEU LYS ILE SER THR LEU ILE ASP ASN VAL LYS VAL LYS SEQRES 10 A 508 ASP LYS TYR THR VAL GLU LEU ASN LEU LYS GLU ALA TYR SEQRES 11 A 508 GLN PRO ALA LEU ALA GLU LEU ALA MET PRO ARG PRO TYR SEQRES 12 A 508 VAL PHE VAL SER PRO LYS ASP PHE LYS ASN GLY THR THR SEQRES 13 A 508 LYS ASP GLY VAL LYS LYS PHE ASP GLY THR GLY PRO PHE SEQRES 14 A 508 LYS LEU GLY GLU HIS LYS LYS ASP GLU SER ALA ASP PHE SEQRES 15 A 508 ASN LYS ASN ASP GLN TYR TRP GLY GLU LYS SER LYS LEU SEQRES 16 A 508 ASN LYS VAL GLN ALA LYS VAL MET PRO ALA GLY GLU THR SEQRES 17 A 508 ALA PHE LEU SER MET LYS LYS GLY GLU THR ASN PHE ALA SEQRES 18 A 508 PHE THR ASP ASP ARG GLY THR ASP SER LEU ASP LYS ASP SEQRES 19 A 508 SER LEU LYS GLN LEU LYS ASP THR GLY ASP TYR GLN VAL SEQRES 20 A 508 LYS ARG SER GLN PRO MET ASN THR LYS MET LEU VAL VAL SEQRES 21 A 508 ASN SER GLY LYS LYS ASP ASN ALA VAL SER ASP LYS THR SEQRES 22 A 508 VAL ARG GLN ALA ILE GLY HIS MET VAL ASN ARG ASP LYS SEQRES 23 A 508 ILE ALA LYS GLU ILE LEU ASP GLY GLN GLU LYS PRO ALA SEQRES 24 A 508 THR GLN LEU PHE ALA LYS ASN VAL THR ASP ILE ASN PHE SEQRES 25 A 508 ASP MET PRO THR ARG LYS TYR ASP LEU LYS LYS ALA GLU SEQRES 26 A 508 SER LEU LEU ASP GLU ALA GLY TRP LYS LYS GLY LYS ASP SEQRES 27 A 508 SER ASP VAL ARG GLN LYS ASP GLY LYS ASN LEU GLU MET SEQRES 28 A 508 ALA MET TYR TYR ASP LYS GLY SER SER SER GLN LYS GLU SEQRES 29 A 508 GLN ALA GLU TYR LEU GLN ALA GLU PHE LYS LYS MET GLY SEQRES 30 A 508 ILE LYS LEU ASN ILE ASN GLY GLU THR SER ASP LYS ILE SEQRES 31 A 508 ALA GLU ARG ARG THR SER GLY ASP TYR ASP LEU MET PHE SEQRES 32 A 508 ASN GLN THR TRP GLY LEU LEU TYR ASP PRO GLN SER THR SEQRES 33 A 508 ILE ALA ALA PHE LYS ALA LYS ASN GLY TYR GLU SER ALA SEQRES 34 A 508 THR SER GLY ILE GLU ASN LYS ASP LYS ILE TYR ASN SER SEQRES 35 A 508 ILE ASP ASP ALA PHE LYS ILE GLN ASN GLY LYS GLU ARG SEQRES 36 A 508 SER ASP ALA TYR LYS ASN ILE LEU LYS GLN ILE ASP ASP SEQRES 37 A 508 GLU GLY ILE PHE ILE PRO ILE SER HIS GLY SER MET THR SEQRES 38 A 508 VAL VAL ALA PRO LYS ASP LEU GLU LYS VAL SER PHE THR SEQRES 39 A 508 GLN SER GLN TYR GLU LEU PRO PHE ASN GLU MET GLN TYR SEQRES 40 A 508 LYS HET ZN A 601 1 HET GOL A 602 6 HET GOL A 603 6 HET GOL A 604 6 HET GOL A 605 6 HET GOL A 606 6 HET PEG A 607 7 HET 8UX A 608 23 HET CL A 609 1 HET ACT A 610 4 HETNAM ZN ZINC ION HETNAM GOL GLYCEROL HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM 8UX (2~{S})-4-[[(2~{R})-3-(1~{H}-IMIDAZOL-4-YL)-1-OXIDANYL- HETNAM 2 8UX 1-OXIDANYLIDENE-PROPAN-2-YL]AMINO]-2-[[(2~{S})-1- HETNAM 3 8UX OXIDANYL-1-OXIDANYLIDENE-PROPAN-2-YL]AMINO]BUTANOIC HETNAM 4 8UX ACID HETNAM CL CHLORIDE ION HETNAM ACT ACETATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN 8UX STAPHYLOPINE FORMUL 2 ZN ZN 2+ FORMUL 3 GOL 5(C3 H8 O3) FORMUL 8 PEG C4 H10 O3 FORMUL 9 8UX C13 H20 N4 O6 FORMUL 10 CL CL 1- FORMUL 11 ACT C2 H3 O2 1- FORMUL 12 HOH *344(H2 O) HELIX 1 AA1 GLY A 1 ASN A 8 1 8 HELIX 2 AA2 SER A 30 TYR A 38 1 9 HELIX 3 AA3 ASP A 83 GLU A 96 1 14 HELIX 4 AA4 ASN A 97 SER A 102 5 6 HELIX 5 AA5 LYS A 105 LEU A 109 1 5 HELIX 6 AA6 PRO A 131 ALA A 137 1 7 HELIX 7 AA7 SER A 146 LYS A 148 5 3 HELIX 8 AA8 GLY A 205 LYS A 214 1 10 HELIX 9 AA9 ASP A 231 THR A 241 1 11 HELIX 10 AB1 ASN A 266 SER A 269 5 4 HELIX 11 AB2 ASP A 270 HIS A 279 1 10 HELIX 12 AB3 ASN A 282 ILE A 290 1 9 HELIX 13 AB4 ASP A 319 ALA A 330 1 12 HELIX 14 AB5 SER A 358 MET A 375 1 18 HELIX 15 AB6 THR A 385 GLY A 396 1 12 HELIX 16 AB7 PRO A 412 ALA A 418 1 7 HELIX 17 AB8 PHE A 419 ALA A 421 5 3 HELIX 18 AB9 TYR A 425 SER A 430 1 6 HELIX 19 AC1 ASN A 434 PHE A 446 1 13 HELIX 20 AC2 ASN A 450 GLY A 469 1 20 SHEET 1 AA1 4 GLN A 10 THR A 15 0 SHEET 2 AA1 4 LYS A 196 VAL A 201 1 O LYS A 200 N TYR A 13 SHEET 3 AA1 4 SER A 178 LYS A 183 -1 N PHE A 181 O VAL A 197 SHEET 4 AA1 4 PHE A 168 LYS A 174 -1 N LYS A 169 O ASN A 182 SHEET 1 AA2 2 VAL A 42 THR A 45 0 SHEET 2 AA2 2 GLY A 48 PRO A 51 -1 O LYS A 50 N ARG A 43 SHEET 1 AA3 4 ALA A 54 VAL A 59 0 SHEET 2 AA3 4 THR A 65 LEU A 70 -1 O HIS A 69 N LYS A 56 SHEET 3 AA3 4 THR A 120 LEU A 125 -1 O LEU A 123 N TYR A 66 SHEET 4 AA3 4 ILE A 110 ASP A 117 -1 N LYS A 114 O GLU A 122 SHEET 1 AA4 2 PHE A 150 LYS A 151 0 SHEET 2 AA4 2 THR A 154 VAL A 159 -1 O THR A 154 N LYS A 151 SHEET 1 AA5 6 ALA A 220 PHE A 221 0 SHEET 2 AA5 6 PHE A 471 PRO A 484 -1 O VAL A 482 N ALA A 220 SHEET 3 AA5 6 TYR A 244 VAL A 259 -1 N MET A 252 O GLY A 477 SHEET 4 AA5 6 LEU A 400 GLN A 404 -1 O MET A 401 N VAL A 258 SHEET 5 AA5 6 GLU A 349 ASP A 355 1 N TYR A 353 O PHE A 402 SHEET 6 AA5 6 LYS A 378 GLU A 384 1 O ASN A 380 N MET A 352 SHEET 1 AA6 2 GLN A 342 LYS A 343 0 SHEET 2 AA6 2 LYS A 346 ASN A 347 -1 O LYS A 346 N LYS A 343 SHEET 1 AA7 2 LEU A 487 GLU A 488 0 SHEET 2 AA7 2 GLN A 505 TYR A 506 -1 O GLN A 505 N GLU A 488 LINK ZN ZN A 601 O 8UX A 608 1555 1555 1.95 LINK ZN ZN A 601 NAP 8UX A 608 1555 1555 2.06 LINK ZN ZN A 601 OAD 8UX A 608 1555 1555 2.19 LINK ZN ZN A 601 N 8UX A 608 1555 1555 2.27 LINK ZN ZN A 601 OAC 8UX A 608 1555 1555 2.22 LINK ZN ZN A 601 NAN 8UX A 608 1555 1555 2.35 CISPEP 1 ARG A 140 PRO A 141 0 8.17 CISPEP 2 ASP A 411 PRO A 412 0 3.74 SITE 1 AC1 1 8UX A 608 SITE 1 AC2 8 TRP A 103 LYS A 105 TYR A 129 GLU A 135 SITE 2 AC2 8 GLN A 413 SER A 414 PHE A 446 HOH A 932 SITE 1 AC3 7 GLY A 20 ASP A 21 MET A 22 PHE A 162 SITE 2 AC3 7 HIS A 173 HOH A 712 HOH A 926 SITE 1 AC4 5 THR A 315 ARG A 316 LYS A 463 ASP A 466 SITE 2 AC4 5 ASP A 467 SITE 1 AC5 7 SER A 102 TRP A 103 ALA A 417 ASP A 443 SITE 2 AC5 7 PHE A 446 HOH A 706 HOH A 740 SITE 1 AC6 7 TYR A 27 ARG A 225 ALA A 390 ARG A 393 SITE 2 AC6 7 ASN A 423 8UX A 608 HOH A 708 SITE 1 AC7 8 ARG A 43 ASN A 44 ALA A 137 MET A 138 SITE 2 AC7 8 PRO A 139 GLU A 498 HOH A 738 HOH A 753 SITE 1 AC8 15 TYR A 27 TRP A 103 ARG A 140 ASP A 224 SITE 2 AC8 15 ARG A 225 ARG A 393 TRP A 406 ASN A 423 SITE 3 AC8 15 TYR A 497 ZN A 601 GOL A 606 HOH A 724 SITE 4 AC8 15 HOH A 750 HOH A 833 HOH A 834 SITE 1 AC9 2 THR A 299 HIS A 476 SITE 1 AD1 3 LYS A 55 LYS A 56 TRP A 57 CRYST1 86.070 156.349 42.257 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011618 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006396 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023665 0.00000