HEADER OXIDOREDUCTASE 28-SEP-17 5YHJ TITLE CYTOCHROME P450EX ALPHA (CYP152N1) WILD-TYPE WITH MYRISTIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME P450; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: EXIGUOBACTERIUM SP. (STRAIN ATCC BAA-1283 / SOURCE 3 AT1B); SOURCE 4 ORGANISM_TAXID: 360911; SOURCE 5 STRAIN: ATCC BAA-1283 / AT1B; SOURCE 6 ATCC: BAA-1283; SOURCE 7 GENE: EAT1B_2299; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: M15; SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PQE30T-CYP152N1 KEYWDS FATTY ACID PEROXYGENASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR H.ONODA,O.SHOJI,K.SUZUKI,H.SUGIMOTO,Y.SHIRO,Y.WATANABE REVDAT 2 27-MAR-24 5YHJ 1 LINK REVDAT 1 06-DEC-17 5YHJ 0 JRNL AUTH H.ONODA,O.SHOJI,K.SUZUKI,H.SUGIMOTO,Y.SHIRO,Y.WATANABE JRNL TITL ALPHA-OXIDATIVE DECARBOXYLATION OF FATTY ACIDS CATALYSED BY JRNL TITL 2 CYTOCHROME P450 PEROXYGENASES YIELDING SHORTER-ALKYL-CHAIN JRNL TITL 3 FATTY ACIDS JRNL REF CATALYSIS SCIENCE AND 2017 JRNL REF 2 TECHNOLOGY JRNL REFN ESSN 2044-4761 JRNL DOI 10.1039/C7CY02263H REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1-2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.75 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 35736 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.560 REMARK 3 FREE R VALUE TEST SET COUNT : 1986 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.7465 - 5.5038 0.96 2341 142 0.2082 0.2236 REMARK 3 2 5.5038 - 4.3843 0.99 2410 142 0.1790 0.2119 REMARK 3 3 4.3843 - 3.8347 1.00 2435 139 0.1823 0.1918 REMARK 3 4 3.8347 - 3.4862 1.00 2407 140 0.2021 0.2607 REMARK 3 5 3.4862 - 3.2375 1.00 2427 146 0.2285 0.2409 REMARK 3 6 3.2375 - 3.0473 1.00 2446 138 0.2305 0.2976 REMARK 3 7 3.0473 - 2.8952 1.00 2404 142 0.2348 0.2321 REMARK 3 8 2.8952 - 2.7695 1.00 2424 141 0.2379 0.3080 REMARK 3 9 2.7695 - 2.6632 1.00 2401 143 0.2407 0.2804 REMARK 3 10 2.6632 - 2.5715 1.00 2417 142 0.2409 0.2766 REMARK 3 11 2.5715 - 2.4912 1.00 2417 151 0.2391 0.3503 REMARK 3 12 2.4912 - 2.4201 1.00 2428 140 0.2484 0.2966 REMARK 3 13 2.4201 - 2.3565 1.00 2368 139 0.2656 0.3106 REMARK 3 14 2.3565 - 2.2991 0.99 2425 141 0.2798 0.3440 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.330 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.850 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.95 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 57.85 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 6948 REMARK 3 ANGLE : 1.048 9415 REMARK 3 CHIRALITY : 0.052 995 REMARK 3 PLANARITY : 0.006 1211 REMARK 3 DIHEDRAL : 17.521 4122 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 88 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.8434 1.0395 -17.7568 REMARK 3 T TENSOR REMARK 3 T11: 0.7841 T22: 0.3981 REMARK 3 T33: 0.3928 T12: -0.3039 REMARK 3 T13: 0.0634 T23: -0.0647 REMARK 3 L TENSOR REMARK 3 L11: 1.7557 L22: 0.8067 REMARK 3 L33: 3.8825 L12: 0.6407 REMARK 3 L13: -1.5479 L23: 0.6273 REMARK 3 S TENSOR REMARK 3 S11: -0.3873 S12: 0.5086 S13: -0.3384 REMARK 3 S21: -0.0425 S22: 0.0083 S23: 0.0875 REMARK 3 S31: 1.7018 S32: -0.6187 S33: 0.2784 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 89 THROUGH 226 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.7703 -7.6866 10.0766 REMARK 3 T TENSOR REMARK 3 T11: 1.1201 T22: 0.0856 REMARK 3 T33: 0.4665 T12: -0.2506 REMARK 3 T13: 0.2305 T23: 0.0641 REMARK 3 L TENSOR REMARK 3 L11: 2.2648 L22: 2.5764 REMARK 3 L33: 6.0719 L12: 2.0151 REMARK 3 L13: -0.0594 L23: -1.1015 REMARK 3 S TENSOR REMARK 3 S11: -0.5039 S12: -0.6116 S13: -0.4629 REMARK 3 S21: -0.2963 S22: 0.0911 S23: -0.1151 REMARK 3 S31: 2.2515 S32: -0.4476 S33: 0.2788 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 227 THROUGH 377 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.5693 9.5976 -3.0726 REMARK 3 T TENSOR REMARK 3 T11: 0.3044 T22: 0.3266 REMARK 3 T33: 0.3705 T12: -0.1258 REMARK 3 T13: -0.0312 T23: 0.0422 REMARK 3 L TENSOR REMARK 3 L11: 3.2802 L22: 0.6110 REMARK 3 L33: 6.3164 L12: 1.0383 REMARK 3 L13: -1.4722 L23: -0.2072 REMARK 3 S TENSOR REMARK 3 S11: -0.3415 S12: 0.6741 S13: 0.2802 REMARK 3 S21: -0.0613 S22: 0.3561 S23: 0.3397 REMARK 3 S31: 0.3951 S32: -0.8623 S33: 0.0677 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 378 THROUGH 412 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.6686 13.9626 10.8509 REMARK 3 T TENSOR REMARK 3 T11: 0.2413 T22: 0.3176 REMARK 3 T33: 0.3368 T12: -0.0222 REMARK 3 T13: -0.0263 T23: -0.0170 REMARK 3 L TENSOR REMARK 3 L11: 3.9195 L22: 2.1583 REMARK 3 L33: 6.4323 L12: 0.4386 REMARK 3 L13: -1.7755 L23: 0.5720 REMARK 3 S TENSOR REMARK 3 S11: -0.1117 S12: -0.7854 S13: 0.1456 REMARK 3 S21: 0.2313 S22: -0.1301 S23: 0.0345 REMARK 3 S31: 0.4922 S32: 0.7367 S33: 0.2369 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 2 THROUGH 88 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.4026 24.5795 -7.2575 REMARK 3 T TENSOR REMARK 3 T11: 0.4216 T22: 0.8120 REMARK 3 T33: 0.4265 T12: -0.2916 REMARK 3 T13: -0.0742 T23: 0.0656 REMARK 3 L TENSOR REMARK 3 L11: 1.4201 L22: 1.7215 REMARK 3 L33: 2.9189 L12: 0.6649 REMARK 3 L13: 0.6586 L23: -1.5108 REMARK 3 S TENSOR REMARK 3 S11: -0.0542 S12: 0.1205 S13: 0.0306 REMARK 3 S21: 0.4126 S22: -0.3287 S23: -0.3455 REMARK 3 S31: -0.6003 S32: 1.5792 S33: 0.2835 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 89 THROUGH 257 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.5742 29.1856 -33.9495 REMARK 3 T TENSOR REMARK 3 T11: 0.1268 T22: 1.0340 REMARK 3 T33: 0.4571 T12: -0.1390 REMARK 3 T13: 0.0314 T23: 0.1750 REMARK 3 L TENSOR REMARK 3 L11: 2.7247 L22: 3.1981 REMARK 3 L33: 5.9902 L12: 1.4930 REMARK 3 L13: -1.3964 L23: -0.2488 REMARK 3 S TENSOR REMARK 3 S11: 0.1338 S12: -0.5077 S13: -0.1943 REMARK 3 S21: -0.2489 S22: -0.4343 S23: -0.6589 REMARK 3 S31: -0.1917 S32: 2.1547 S33: 0.1454 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 258 THROUGH 377 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.7219 32.1551 -19.8939 REMARK 3 T TENSOR REMARK 3 T11: 0.4312 T22: 0.2685 REMARK 3 T33: 0.3929 T12: -0.1251 REMARK 3 T13: 0.0742 T23: -0.0716 REMARK 3 L TENSOR REMARK 3 L11: 0.4883 L22: 3.2512 REMARK 3 L33: 6.0932 L12: 0.9101 REMARK 3 L13: -0.3608 L23: -1.9029 REMARK 3 S TENSOR REMARK 3 S11: 0.4082 S12: -0.1298 S13: 0.3484 REMARK 3 S21: 0.7690 S22: -0.3787 S23: 0.2941 REMARK 3 S31: -1.0790 S32: 0.0595 S33: 0.0328 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 378 THROUGH 412 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.4814 16.7977 -35.8816 REMARK 3 T TENSOR REMARK 3 T11: 0.3214 T22: 0.3007 REMARK 3 T33: 0.3157 T12: -0.0122 REMARK 3 T13: 0.0043 T23: -0.0053 REMARK 3 L TENSOR REMARK 3 L11: 2.6740 L22: 4.3142 REMARK 3 L33: 7.4402 L12: 0.2858 REMARK 3 L13: 1.0916 L23: -2.0191 REMARK 3 S TENSOR REMARK 3 S11: -0.0583 S12: 0.2461 S13: 0.1057 REMARK 3 S21: -0.8144 S22: 0.0043 S23: 0.0815 REMARK 3 S31: 0.6785 S32: 0.4218 S33: 0.1606 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5YHJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-OCT-17. REMARK 100 THE DEPOSITION ID IS D_1300005288. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-DEC-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0-8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL26B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN A200 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35823 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.05200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : 0.33000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.090 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1 UL PROTEIN SOLUTION (16 MG/ML REMARK 280 CYP152N1, 0.05 M MES BUFFER PH 7.0, 20% V/V GLYCEROL) AND 1 UL REMARK 280 (0.1M TRIS-HCL BUFFER PH 8.5, 0.2M MAGNESIUM CHLORIDE, 30% W/V REMARK 280 POLYETHYLENE GLYCOL 4000 (PRE-CRYSTALLIZATION TEST REAGENT A2, REMARK 280 HAMPTON RESEARCH), VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 119.17400 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 59.58700 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 178.76100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6650 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -48.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 170 REMARK 465 THR A 171 REMARK 465 SER A 172 REMARK 465 LEU A 173 REMARK 465 GLY A 174 REMARK 465 GLN A 413 REMARK 465 MET B 1 REMARK 465 GLN B 413 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU B 379 NH1 ARG B 411 2.17 REMARK 500 O LEU B 211 OG SER B 215 2.18 REMARK 500 NH1 ARG B 199 OE1 GLU B 227 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS A 294 O GLU B 220 1445 1.96 REMARK 500 O GLU A 220 NZ LYS B 294 1445 2.00 REMARK 500 OG1 THR A 273 OE1 GLU B 127 3555 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 103 33.04 -79.89 REMARK 500 PHE A 285 -80.75 -143.95 REMARK 500 ALA A 291 -177.04 -170.05 REMARK 500 ASP A 296 122.02 -36.73 REMARK 500 LEU A 404 81.23 62.07 REMARK 500 MET B 103 38.31 -78.34 REMARK 500 SER B 172 29.99 -147.24 REMARK 500 ASP B 219 -168.07 -77.93 REMARK 500 PRO B 226 159.40 -49.02 REMARK 500 PHE B 285 -79.59 -143.36 REMARK 500 ALA B 291 -179.12 -170.58 REMARK 500 ILE B 346 42.05 -140.40 REMARK 500 LEU B 404 82.22 59.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 501 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 359 SG REMARK 620 2 HEM A 501 NA 99.3 REMARK 620 3 HEM A 501 NB 94.3 89.3 REMARK 620 4 HEM A 501 NC 93.7 167.0 89.5 REMARK 620 5 HEM A 501 ND 103.1 87.7 162.6 89.6 REMARK 620 6 HOH A 605 O 170.1 88.2 79.2 78.9 83.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 501 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 359 SG REMARK 620 2 HEM B 501 NA 95.7 REMARK 620 3 HEM B 501 NB 95.1 91.5 REMARK 620 4 HEM B 501 NC 94.7 169.5 89.0 REMARK 620 5 HEM B 501 ND 99.8 87.4 165.1 89.5 REMARK 620 6 HOH B 602 O 167.5 93.3 76.1 76.7 89.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MYR A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MYR B 502 DBREF 5YHJ A 1 413 UNP C4L2G9 C4L2G9_EXISA 1 413 DBREF 5YHJ B 1 413 UNP C4L2G9 C4L2G9_EXISA 1 413 SEQRES 1 A 413 MET GLY LYS VAL ILE PRO LYS GLN GLU GLY LEU ASP HIS SEQRES 2 A 413 SER VAL ASP PHE LEU ARG GLU GLY TYR LEU PHE VAL ALA SEQRES 3 A 413 ASN ARG ARG LYS SER PHE GLN SER ASN ILE PHE GLU SER SEQRES 4 A 413 ARG LEU LEU GLY GLU ARG VAL ILE CYS LEU GLY GLY GLU SEQRES 5 A 413 GLU ALA ALA GLU VAL PHE TYR ASP ALA ASN LYS PHE THR SEQRES 6 A 413 ARG GLN ASP ALA ALA PRO LYS ARG LEU LEU LYS THR LEU SEQRES 7 A 413 PHE GLY GLU GLY GLY VAL GLN THR LEU ASP GLY SER GLU SEQRES 8 A 413 HIS THR HIS ARG LYS GLN MET PHE MET SER LEU MET THR SEQRES 9 A 413 LYS GLU ASN ILE ASP ARG LEU LEU ARG LEU THR TYR ARG SEQRES 10 A 413 GLU TRP ASN GLN ILE GLU ARG MET GLY GLU GLU ILE VAL SEQRES 11 A 413 LEU TYR ASP ILE ALA GLN GLU VAL LEU MET LYS ALA VAL SEQRES 12 A 413 CYS GLU TRP SER GLY VAL PRO LEU ALA LYS GLU GLU VAL SEQRES 13 A 413 GLY LYS ARG THR GLU GLU MET ARG LEU LEU PHE GLU SER SEQRES 14 A 413 GLY THR SER LEU GLY PRO THR TYR LEU GLN GLY ARG LYS SEQRES 15 A 413 ALA ARG SER SER ALA GLU VAL TRP ILE ARG GLN MET VAL SEQRES 16 A 413 LYS GLU VAL ARG SER ASN ARG LEU LEU PRO ASN GLU HIS SEQRES 17 A 413 THR ALA LEU TYR GLU PHE SER TRP HIS ARG ASP GLU SER SEQRES 18 A 413 GLY GLU LEU LEU PRO GLU GLU VAL VAL ALA VAL GLU VAL SEQRES 19 A 413 LEU ASN ILE LEU ARG PRO THR VAL ALA ILE SER VAL TYR SEQRES 20 A 413 VAL LEU PHE THR VAL LEU ALA LEU HIS GLN PHE PRO ASP SEQRES 21 A 413 VAL LYS GLU GLN VAL GLU ARG GLY GLU VAL SER LYS THR SEQRES 22 A 413 GLU PHE VAL GLN GLU VAL ARG ARG PHE TYR PRO PHE PHE SEQRES 23 A 413 PRO VAL ALA ALA ALA ARG VAL LYS THR ASP PHE GLU TRP SEQRES 24 A 413 ASP GLY TYR ALA PHE PRO GLU GLY THR LEU THR LEU LEU SEQRES 25 A 413 ASP LEU TYR GLY THR ASN HIS ASP VAL SER ILE TRP THR SEQRES 26 A 413 GLU PRO ASP ARG PHE ASP PRO SER ARG PHE LYS ASP TRP SEQRES 27 A 413 LYS GLU SER PRO PHE ASN PHE ILE PRO GLN GLY GLY GLY SEQRES 28 A 413 ASP VAL ASP PHE GLY HIS ARG CYS ALA GLY GLU HIS VAL SEQRES 29 A 413 THR ILE ALA ILE LEU ALA GLN VAL ILE GLU LEU PHE THR SEQRES 30 A 413 LYS GLU TYR ALA TYR THR VAL PRO PRO GLN ASP LEU SER SEQRES 31 A 413 TYR SER PHE VAL ASP MET PRO SER LEU PRO LYS SER LYS SEQRES 32 A 413 LEU ARG LEU THR HIS LEU THR ARG ASN GLN SEQRES 1 B 413 MET GLY LYS VAL ILE PRO LYS GLN GLU GLY LEU ASP HIS SEQRES 2 B 413 SER VAL ASP PHE LEU ARG GLU GLY TYR LEU PHE VAL ALA SEQRES 3 B 413 ASN ARG ARG LYS SER PHE GLN SER ASN ILE PHE GLU SER SEQRES 4 B 413 ARG LEU LEU GLY GLU ARG VAL ILE CYS LEU GLY GLY GLU SEQRES 5 B 413 GLU ALA ALA GLU VAL PHE TYR ASP ALA ASN LYS PHE THR SEQRES 6 B 413 ARG GLN ASP ALA ALA PRO LYS ARG LEU LEU LYS THR LEU SEQRES 7 B 413 PHE GLY GLU GLY GLY VAL GLN THR LEU ASP GLY SER GLU SEQRES 8 B 413 HIS THR HIS ARG LYS GLN MET PHE MET SER LEU MET THR SEQRES 9 B 413 LYS GLU ASN ILE ASP ARG LEU LEU ARG LEU THR TYR ARG SEQRES 10 B 413 GLU TRP ASN GLN ILE GLU ARG MET GLY GLU GLU ILE VAL SEQRES 11 B 413 LEU TYR ASP ILE ALA GLN GLU VAL LEU MET LYS ALA VAL SEQRES 12 B 413 CYS GLU TRP SER GLY VAL PRO LEU ALA LYS GLU GLU VAL SEQRES 13 B 413 GLY LYS ARG THR GLU GLU MET ARG LEU LEU PHE GLU SER SEQRES 14 B 413 GLY THR SER LEU GLY PRO THR TYR LEU GLN GLY ARG LYS SEQRES 15 B 413 ALA ARG SER SER ALA GLU VAL TRP ILE ARG GLN MET VAL SEQRES 16 B 413 LYS GLU VAL ARG SER ASN ARG LEU LEU PRO ASN GLU HIS SEQRES 17 B 413 THR ALA LEU TYR GLU PHE SER TRP HIS ARG ASP GLU SER SEQRES 18 B 413 GLY GLU LEU LEU PRO GLU GLU VAL VAL ALA VAL GLU VAL SEQRES 19 B 413 LEU ASN ILE LEU ARG PRO THR VAL ALA ILE SER VAL TYR SEQRES 20 B 413 VAL LEU PHE THR VAL LEU ALA LEU HIS GLN PHE PRO ASP SEQRES 21 B 413 VAL LYS GLU GLN VAL GLU ARG GLY GLU VAL SER LYS THR SEQRES 22 B 413 GLU PHE VAL GLN GLU VAL ARG ARG PHE TYR PRO PHE PHE SEQRES 23 B 413 PRO VAL ALA ALA ALA ARG VAL LYS THR ASP PHE GLU TRP SEQRES 24 B 413 ASP GLY TYR ALA PHE PRO GLU GLY THR LEU THR LEU LEU SEQRES 25 B 413 ASP LEU TYR GLY THR ASN HIS ASP VAL SER ILE TRP THR SEQRES 26 B 413 GLU PRO ASP ARG PHE ASP PRO SER ARG PHE LYS ASP TRP SEQRES 27 B 413 LYS GLU SER PRO PHE ASN PHE ILE PRO GLN GLY GLY GLY SEQRES 28 B 413 ASP VAL ASP PHE GLY HIS ARG CYS ALA GLY GLU HIS VAL SEQRES 29 B 413 THR ILE ALA ILE LEU ALA GLN VAL ILE GLU LEU PHE THR SEQRES 30 B 413 LYS GLU TYR ALA TYR THR VAL PRO PRO GLN ASP LEU SER SEQRES 31 B 413 TYR SER PHE VAL ASP MET PRO SER LEU PRO LYS SER LYS SEQRES 32 B 413 LEU ARG LEU THR HIS LEU THR ARG ASN GLN HET HEM A 501 43 HET MYR A 502 16 HET HEM B 501 43 HET MYR B 502 16 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM MYR MYRISTIC ACID HETSYN HEM HEME FORMUL 3 HEM 2(C34 H32 FE N4 O4) FORMUL 4 MYR 2(C14 H28 O2) FORMUL 7 HOH *59(H2 O) HELIX 1 AA1 HIS A 13 GLY A 21 1 9 HELIX 2 AA2 LEU A 23 GLN A 33 1 11 HELIX 3 AA3 GLY A 51 TYR A 59 1 9 HELIX 4 AA4 PRO A 71 LEU A 78 1 8 HELIX 5 AA5 GLY A 83 LEU A 87 5 5 HELIX 6 AA6 ASP A 88 SER A 101 1 14 HELIX 7 AA7 THR A 104 ASN A 120 1 17 HELIX 8 AA8 GLN A 121 ARG A 124 5 4 HELIX 9 AA9 LEU A 131 SER A 147 1 17 HELIX 10 AB1 ALA A 152 GLU A 154 5 3 HELIX 11 AB2 GLU A 155 GLU A 168 1 14 HELIX 12 AB3 THR A 176 SER A 200 1 25 HELIX 13 AB4 THR A 209 TRP A 216 1 8 HELIX 14 AB5 PRO A 226 PHE A 258 1 33 HELIX 15 AB6 PHE A 258 ARG A 267 1 10 HELIX 16 AB7 SER A 271 TYR A 283 1 13 HELIX 17 AB8 LEU A 314 HIS A 319 1 6 HELIX 18 AB9 ASP A 331 LYS A 336 5 6 HELIX 19 AC1 GLY A 361 LYS A 378 1 18 HELIX 20 AC2 HIS B 13 GLY B 21 1 9 HELIX 21 AC3 LEU B 23 GLN B 33 1 11 HELIX 22 AC4 GLY B 51 TYR B 59 1 9 HELIX 23 AC5 PRO B 71 LEU B 78 1 8 HELIX 24 AC6 GLY B 83 LEU B 87 5 5 HELIX 25 AC7 ASP B 88 SER B 101 1 14 HELIX 26 AC8 THR B 104 GLN B 121 1 18 HELIX 27 AC9 ILE B 122 GLY B 126 5 5 HELIX 28 AD1 LEU B 131 SER B 147 1 17 HELIX 29 AD2 ALA B 152 GLU B 154 5 3 HELIX 30 AD3 GLU B 155 GLU B 168 1 14 HELIX 31 AD4 PRO B 175 SER B 200 1 26 HELIX 32 AD5 THR B 209 TRP B 216 1 8 HELIX 33 AD6 PRO B 226 PHE B 258 1 33 HELIX 34 AD7 PHE B 258 ARG B 267 1 10 HELIX 35 AD8 SER B 271 TYR B 283 1 13 HELIX 36 AD9 LEU B 314 HIS B 319 1 6 HELIX 37 AE1 ASP B 331 LYS B 336 5 6 HELIX 38 AE2 GLY B 361 LYS B 378 1 18 SHEET 1 AA1 5 ILE A 36 LEU A 41 0 SHEET 2 AA1 5 GLU A 44 LEU A 49 -1 O CYS A 48 N PHE A 37 SHEET 3 AA1 5 LEU A 309 ASP A 313 1 O LEU A 311 N ILE A 47 SHEET 4 AA1 5 VAL A 288 VAL A 293 -1 N ALA A 291 O THR A 310 SHEET 5 AA1 5 PHE A 64 THR A 65 -1 N THR A 65 O ARG A 292 SHEET 1 AA2 3 GLU A 128 VAL A 130 0 SHEET 2 AA2 3 ARG A 405 ARG A 411 -1 O LEU A 406 N ILE A 129 SHEET 3 AA2 3 TYR A 380 THR A 383 -1 N THR A 383 O THR A 407 SHEET 1 AA3 2 PHE A 297 TRP A 299 0 SHEET 2 AA3 2 TYR A 302 PHE A 304 -1 O PHE A 304 N PHE A 297 SHEET 1 AA4 5 ILE B 36 LEU B 41 0 SHEET 2 AA4 5 GLU B 44 LEU B 49 -1 O VAL B 46 N SER B 39 SHEET 3 AA4 5 LEU B 309 ASP B 313 1 O LEU B 311 N ILE B 47 SHEET 4 AA4 5 VAL B 288 VAL B 293 -1 N ALA B 291 O THR B 310 SHEET 5 AA4 5 PHE B 64 THR B 65 -1 N THR B 65 O ARG B 292 SHEET 1 AA5 3 GLU B 128 VAL B 130 0 SHEET 2 AA5 3 ARG B 405 ARG B 411 -1 O LEU B 406 N ILE B 129 SHEET 3 AA5 3 TYR B 380 THR B 383 -1 N THR B 383 O THR B 407 SHEET 1 AA6 2 PHE B 297 TRP B 299 0 SHEET 2 AA6 2 TYR B 302 PHE B 304 -1 O PHE B 304 N PHE B 297 LINK SG CYS A 359 FE HEM A 501 1555 1555 2.45 LINK FE HEM A 501 O HOH A 605 1555 1555 1.91 LINK SG CYS B 359 FE HEM B 501 1555 1555 2.41 LINK FE HEM B 501 O HOH B 602 1555 1555 1.92 CISPEP 1 LYS A 336 ASP A 337 0 -7.32 CISPEP 2 MET A 396 PRO A 397 0 -4.60 CISPEP 3 MET B 396 PRO B 397 0 -6.43 SITE 1 AC1 24 TYR A 59 ARG A 66 VAL A 84 GLN A 85 SITE 2 AC1 24 HIS A 92 LYS A 96 PRO A 240 THR A 241 SITE 3 AC1 24 ILE A 244 TYR A 247 PHE A 285 PHE A 286 SITE 4 AC1 24 LEU A 314 PRO A 347 GLN A 348 GLY A 349 SITE 5 AC1 24 HIS A 357 ARG A 358 CYS A 359 ALA A 360 SITE 6 AC1 24 GLY A 361 VAL A 364 HOH A 605 HOH A 607 SITE 1 AC2 5 LEU A 74 ARG A 239 PRO A 240 ALA A 243 SITE 2 AC2 5 PHE A 285 SITE 1 AC3 24 TYR B 59 ARG B 66 VAL B 84 GLN B 85 SITE 2 AC3 24 HIS B 92 LYS B 96 PRO B 240 THR B 241 SITE 3 AC3 24 TYR B 247 PHE B 285 PHE B 286 LEU B 314 SITE 4 AC3 24 PRO B 347 GLN B 348 GLY B 356 HIS B 357 SITE 5 AC3 24 ARG B 358 CYS B 359 ALA B 360 GLY B 361 SITE 6 AC3 24 VAL B 364 THR B 365 HOH B 602 HOH B 613 SITE 1 AC4 7 LEU B 74 GLY B 170 ARG B 239 PRO B 240 SITE 2 AC4 7 PHE B 285 PHE B 286 HOH B 602 CRYST1 58.962 58.962 238.348 90.00 90.00 90.00 P 41 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016960 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016960 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004196 0.00000