HEADER CELL CYCLE 03-OCT-17 5YI8 TITLE CRYSTAL STRUCTURE OF DROSOPHILA NUMB PTB DOMAIN AND PON PEPTIDE TITLE 2 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN NUMB; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PTB DOMAIN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: PON PEPTIDE FROM PARTNER OF NUMB; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: RE65495P; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 3 ORGANISM_COMMON: FRUIT FLY; SOURCE 4 ORGANISM_TAXID: 7227; SOURCE 5 GENE: NUMB, CG3779; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PETM3C; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 14 ORGANISM_COMMON: FRUIT FLY; SOURCE 15 ORGANISM_TAXID: 7227 KEYWDS NUMB PTB DOMAIN AND PON COMPLEX, CELL CYCLE EXPDTA X-RAY DIFFRACTION AUTHOR Z.SHAN,W.WEN REVDAT 2 22-NOV-23 5YI8 1 REMARK REVDAT 1 18-APR-18 5YI8 0 JRNL AUTH Z.SHAN,Y.TU,Y.YANG,Z.LIU,M.ZENG,H.XU,J.LONG,M.ZHANG,Y.CAI, JRNL AUTH 2 W.WEN JRNL TITL BASAL CONDENSATION OF NUMB AND PON COMPLEX VIA PHASE JRNL TITL 2 TRANSITION DURING DROSOPHILA NEUROBLAST ASYMMETRIC DIVISION. JRNL REF NAT COMMUN V. 9 737 2018 JRNL REFN ESSN 2041-1723 JRNL PMID 29467404 JRNL DOI 10.1038/S41467-018-03077-3 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.80 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 13897 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 699 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.8027 - 3.4201 0.98 2839 130 0.1792 0.2011 REMARK 3 2 3.4201 - 2.7149 1.00 2667 143 0.1969 0.2134 REMARK 3 3 2.7149 - 2.3718 1.00 2670 151 0.1968 0.2423 REMARK 3 4 2.3718 - 2.1550 0.98 2568 148 0.2035 0.2687 REMARK 3 5 2.1550 - 2.0005 0.93 2454 127 0.2081 0.2937 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.600 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.34 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 1246 REMARK 3 ANGLE : 0.951 1676 REMARK 3 CHIRALITY : 0.060 184 REMARK 3 PLANARITY : 0.006 218 REMARK 3 DIHEDRAL : 9.825 743 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 64 THROUGH 77 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.7455 -11.4557 -31.5564 REMARK 3 T TENSOR REMARK 3 T11: 0.3290 T22: 0.4183 REMARK 3 T33: 0.2361 T12: -0.1368 REMARK 3 T13: -0.0051 T23: -0.0395 REMARK 3 L TENSOR REMARK 3 L11: 9.3949 L22: 2.3947 REMARK 3 L33: 2.8115 L12: 1.7864 REMARK 3 L13: 2.9915 L23: -1.3853 REMARK 3 S TENSOR REMARK 3 S11: 0.0536 S12: 0.2185 S13: -0.1696 REMARK 3 S21: -0.5836 S22: 0.2239 S23: -0.1014 REMARK 3 S31: -0.0774 S32: 0.6414 S33: -0.2533 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 78 THROUGH 93 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.5060 -6.3820 -13.8373 REMARK 3 T TENSOR REMARK 3 T11: 0.1306 T22: 0.1941 REMARK 3 T33: 0.1697 T12: -0.0808 REMARK 3 T13: -0.0483 T23: 0.0231 REMARK 3 L TENSOR REMARK 3 L11: 1.8945 L22: 1.8614 REMARK 3 L33: 1.7413 L12: 0.6430 REMARK 3 L13: -0.6969 L23: -0.3198 REMARK 3 S TENSOR REMARK 3 S11: -0.0308 S12: 0.3602 S13: 0.1409 REMARK 3 S21: -0.0754 S22: 0.1238 S23: -0.1354 REMARK 3 S31: -0.2411 S32: 0.1960 S33: -0.0846 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 94 THROUGH 111 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.7056 -15.7161 -7.1504 REMARK 3 T TENSOR REMARK 3 T11: 0.1651 T22: 0.1183 REMARK 3 T33: 0.2025 T12: -0.0619 REMARK 3 T13: -0.0188 T23: 0.0511 REMARK 3 L TENSOR REMARK 3 L11: 4.6448 L22: 5.9415 REMARK 3 L33: 5.8599 L12: 0.9162 REMARK 3 L13: 0.1057 L23: 2.4787 REMARK 3 S TENSOR REMARK 3 S11: -0.0650 S12: 0.1194 S13: -0.0709 REMARK 3 S21: -0.1613 S22: 0.0994 S23: 0.4226 REMARK 3 S31: 0.1116 S32: -0.3803 S33: -0.0332 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 112 THROUGH 124 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.0348 -1.2835 -10.7826 REMARK 3 T TENSOR REMARK 3 T11: 0.1962 T22: 0.2104 REMARK 3 T33: 0.2368 T12: -0.1213 REMARK 3 T13: -0.0310 T23: 0.0094 REMARK 3 L TENSOR REMARK 3 L11: 0.5084 L22: 2.5898 REMARK 3 L33: 1.2265 L12: -0.8179 REMARK 3 L13: 0.5718 L23: -1.7126 REMARK 3 S TENSOR REMARK 3 S11: -0.0237 S12: 0.1127 S13: -0.0050 REMARK 3 S21: 0.1845 S22: 0.0508 S23: 0.0041 REMARK 3 S31: -0.7785 S32: 0.2138 S33: -0.0586 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 125 THROUGH 143 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.9759 -2.7434 -13.1410 REMARK 3 T TENSOR REMARK 3 T11: 0.2547 T22: 0.4952 REMARK 3 T33: 0.3934 T12: -0.1528 REMARK 3 T13: -0.0298 T23: -0.0093 REMARK 3 L TENSOR REMARK 3 L11: 4.0601 L22: 8.5950 REMARK 3 L33: 3.4926 L12: -2.2320 REMARK 3 L13: 0.5778 L23: 1.9463 REMARK 3 S TENSOR REMARK 3 S11: 0.0433 S12: -0.0738 S13: 0.4471 REMARK 3 S21: -0.0047 S22: 0.0650 S23: -0.7634 REMARK 3 S31: -0.4891 S32: 0.7087 S33: -0.1472 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 144 THROUGH 158 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.6166 -13.8706 -14.9650 REMARK 3 T TENSOR REMARK 3 T11: 0.1281 T22: 0.1858 REMARK 3 T33: 0.1739 T12: -0.0438 REMARK 3 T13: -0.0092 T23: 0.0539 REMARK 3 L TENSOR REMARK 3 L11: 3.7188 L22: 3.4852 REMARK 3 L33: 3.5258 L12: 0.0387 REMARK 3 L13: 0.1443 L23: 0.6923 REMARK 3 S TENSOR REMARK 3 S11: -0.0230 S12: 0.2071 S13: 0.1134 REMARK 3 S21: 0.1583 S22: 0.1200 S23: 0.4143 REMARK 3 S31: 0.1068 S32: -0.1899 S33: -0.0644 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 159 THROUGH 201 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.7006 -13.0386 -16.1303 REMARK 3 T TENSOR REMARK 3 T11: 0.1326 T22: 0.2114 REMARK 3 T33: 0.1872 T12: -0.0697 REMARK 3 T13: -0.0292 T23: 0.0065 REMARK 3 L TENSOR REMARK 3 L11: 3.7350 L22: 3.6005 REMARK 3 L33: 4.9437 L12: 0.1614 REMARK 3 L13: -0.1301 L23: 0.1402 REMARK 3 S TENSOR REMARK 3 S11: -0.0607 S12: 0.2285 S13: -0.1696 REMARK 3 S21: -0.0725 S22: 0.0493 S23: -0.2249 REMARK 3 S31: 0.1962 S32: 0.3813 S33: 0.0011 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 131 THROUGH 135 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.5004 -18.2346 -19.6740 REMARK 3 T TENSOR REMARK 3 T11: 0.3290 T22: 0.4249 REMARK 3 T33: 0.4029 T12: -0.1739 REMARK 3 T13: -0.0634 T23: 0.0234 REMARK 3 L TENSOR REMARK 3 L11: 6.9837 L22: 5.5269 REMARK 3 L33: 8.4490 L12: 0.4394 REMARK 3 L13: 1.4239 L23: -2.9871 REMARK 3 S TENSOR REMARK 3 S11: -0.0965 S12: -0.7354 S13: -1.0465 REMARK 3 S21: -0.2409 S22: 0.3348 S23: 0.9036 REMARK 3 S31: 0.6837 S32: -1.3716 S33: -0.1673 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 136 THROUGH 145 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.1501 -22.6926 -16.6648 REMARK 3 T TENSOR REMARK 3 T11: 0.2209 T22: 0.3556 REMARK 3 T33: 0.3375 T12: 0.0809 REMARK 3 T13: -0.0500 T23: -0.0225 REMARK 3 L TENSOR REMARK 3 L11: 6.1878 L22: 5.7457 REMARK 3 L33: 5.9206 L12: -4.4591 REMARK 3 L13: 5.6773 L23: -3.6194 REMARK 3 S TENSOR REMARK 3 S11: 0.1386 S12: -0.2271 S13: -0.2928 REMARK 3 S21: -0.0760 S22: -0.0840 S23: -0.6066 REMARK 3 S31: 0.5925 S32: 0.7918 S33: -0.1067 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 149 THROUGH 159 ) REMARK 3 ORIGIN FOR THE GROUP (A): 47.9901 -26.5321 -2.1772 REMARK 3 T TENSOR REMARK 3 T11: 0.2673 T22: 0.2049 REMARK 3 T33: 0.2686 T12: -0.1544 REMARK 3 T13: -0.0736 T23: 0.0967 REMARK 3 L TENSOR REMARK 3 L11: 3.6762 L22: 4.2843 REMARK 3 L33: 0.9223 L12: 2.1215 REMARK 3 L13: -0.4598 L23: 0.3766 REMARK 3 S TENSOR REMARK 3 S11: -0.1318 S12: 0.3736 S13: 0.0553 REMARK 3 S21: -0.2959 S22: 0.2684 S23: 0.5686 REMARK 3 S31: 0.0423 S32: -0.1689 S33: 0.1887 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5YI8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-OCT-17. REMARK 100 THE DEPOSITION ID IS D_1300005054. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-MAR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL18U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9754 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14087 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : 0.05200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : 0.76200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3F0W REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM FORMATE, 12% PEG 3350, PH REMARK 280 7.0, EVAPORATION, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 120.86933 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 60.43467 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 60.43467 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 120.86933 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 65.08800 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 -37.57857 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 63 REMARK 465 GLY A 167 REMARK 465 THR A 168 REMARK 465 LYS A 202 REMARK 465 GLN A 203 REMARK 465 LYS B 128 REMARK 465 LYS B 129 REMARK 465 LYS B 130 REMARK 465 LEU B 146 REMARK 465 PRO B 147 REMARK 465 GLU B 148 REMARK 465 ALA B 160 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 86 CE NZ REMARK 470 GLU A 95 OE1 OE2 REMARK 470 ARG A 97 NH1 NH2 REMARK 470 LYS A 107 CE NZ REMARK 470 GLN A 111 OE1 NE2 REMARK 470 ARG A 113 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 118 NE CZ NH1 NH2 REMARK 470 LYS A 136 CE NZ REMARK 470 GLU A 145 CG CD OE1 OE2 REMARK 470 LYS A 146 CE NZ REMARK 470 GLU A 157 CD OE1 OE2 REMARK 470 ARG A 158 CZ NH1 NH2 REMARK 470 ARG A 165 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 166 CG OD1 OD2 REMARK 470 THR A 169 OG1 CG2 REMARK 470 ARG A 170 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 181 CE NZ REMARK 470 LYS B 131 NZ REMARK 470 ARG B 132 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 144 CG CD1 CD2 REMARK 470 GLU B 145 CG CD OE1 OE2 REMARK 470 GLN B 150 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 181 26.71 -149.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT B 201 DBREF 5YI8 A 64 203 UNP P16554 NUMB_DROME 64 203 DBREF 5YI8 B 128 160 UNP Q9W4I7 Q9W4I7_DROME 128 160 SEQADV 5YI8 GLY A 63 UNP P16554 EXPRESSION TAG SEQRES 1 A 141 GLY SER LYS PRO HIS GLN TRP GLN ALA ASP GLU GLU ALA SEQRES 2 A 141 VAL ARG SER ALA THR CYS SER PHE SER VAL LYS TYR LEU SEQRES 3 A 141 GLY CYS VAL GLU VAL PHE GLU SER ARG GLY MET GLN VAL SEQRES 4 A 141 CYS GLU GLU ALA LEU LYS VAL LEU ARG GLN SER ARG ARG SEQRES 5 A 141 ARG PRO VAL ARG GLY LEU LEU HIS VAL SER GLY ASP GLY SEQRES 6 A 141 LEU ARG VAL VAL ASP ASP GLU THR LYS GLY LEU ILE VAL SEQRES 7 A 141 ASP GLN THR ILE GLU LYS VAL SER PHE CYS ALA PRO ASP SEQRES 8 A 141 ARG ASN HIS GLU ARG GLY PHE SER TYR ILE CYS ARG ASP SEQRES 9 A 141 GLY THR THR ARG ARG TRP MET CYS HIS GLY PHE LEU ALA SEQRES 10 A 141 CYS LYS ASP SER GLY GLU ARG LEU SER HIS ALA VAL GLY SEQRES 11 A 141 CYS ALA PHE ALA VAL CYS LEU GLU ARG LYS GLN SEQRES 1 B 33 LYS LYS LYS LYS ARG GLU HIS ALA CYS PHE GLU ASN PRO SEQRES 2 B 33 GLY LEU ASN LEU GLU LEU PRO GLU LYS GLN PHE ASN PRO SEQRES 3 B 33 TYR GLU VAL VAL ARG SER ALA HET FMT B 201 3 HETNAM FMT FORMIC ACID FORMUL 3 FMT C H2 O2 FORMUL 4 HOH *53(H2 O) HELIX 1 AA1 PRO A 66 SER A 78 1 13 HELIX 2 AA2 GLY A 98 SER A 112 1 15 HELIX 3 AA3 THR A 143 GLU A 145 5 3 HELIX 4 AA4 SER A 183 ARG A 201 1 19 SHEET 1 AA1 8 LEU A 138 GLN A 142 0 SHEET 2 AA1 8 GLY A 127 ASP A 132 -1 N LEU A 128 O GLN A 142 SHEET 3 AA1 8 VAL A 117 SER A 124 -1 N HIS A 122 O ARG A 129 SHEET 4 AA1 8 CYS A 81 VAL A 93 -1 N PHE A 83 O LEU A 121 SHEET 5 AA1 8 TRP A 172 ALA A 179 -1 O CYS A 174 N VAL A 91 SHEET 6 AA1 8 HIS A 156 ARG A 165 -1 N TYR A 162 O HIS A 175 SHEET 7 AA1 8 VAL A 147 ASP A 153 -1 N PHE A 149 O ILE A 163 SHEET 8 AA1 8 PHE B 137 GLU B 138 -1 O PHE B 137 N CYS A 150 SITE 1 AC1 3 PHE B 137 GLU B 138 HOH B 303 CRYST1 43.392 43.392 181.304 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023046 0.013305 0.000000 0.00000 SCALE2 0.000000 0.026611 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005516 0.00000