HEADER PROTON TRANSPORT 06-OCT-17 5YIO TITLE NMR SOLUTION STRUCTURE OF SUBUNIT EPSILON OF THE MYCOBACTERIUM TITLE 2 TUBERCULOSIS F-ATP SYNTHASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ATP SYNTHASE EPSILON CHAIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ATP SYNTHASE F1 SECTOR EPSILON SUBUNIT,F-ATPASE EPSILON COMPND 5 SUBUNIT; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS (STRAIN ATCC 25618 / SOURCE 3 H37RV); SOURCE 4 ORGANISM_TAXID: 83332; SOURCE 5 STRAIN: ATCC 25618 / H37RV; SOURCE 6 GENE: ATPC, RV1311, MTCY373.31; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR KEYWDS MYCOBACTERIUM, F-ATP SYNTHASE, SUBUNIT EPSILON, BIOENERGETICS, KEYWDS 2 TUBERCULOSIS, PROTON TRANSPORT EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR J.SHIN,P.RAGUNATHAN,L.SUNDARARAMAN,W.NARTEY,M.S.S.MANIMEKALAI, AUTHOR 2 N.BOGDANOVIC,G.GRUBER REVDAT 3 14-JUN-23 5YIO 1 REMARK REVDAT 2 24-APR-19 5YIO 1 COMPND JRNL REVDAT 1 10-OCT-18 5YIO 0 JRNL AUTH S.JOON,P.RAGUNATHAN,L.SUNDARARAMAN,W.NARTEY,S.KUNDU, JRNL AUTH 2 M.S.S.MANIMEKALAI,N.BOGDANOVIC,T.DICK,G.GRUBER JRNL TITL THE NMR SOLUTION STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS JRNL TITL 2 F-ATP SYNTHASE SUBUNIT EPSILON PROVIDES NEW INSIGHT INTO JRNL TITL 3 ENERGY COUPLING INSIDE THE ROTARY ENGINE. JRNL REF FEBS J. V. 285 1111 2018 JRNL REFN ISSN 1742-4658 JRNL PMID 29360236 JRNL DOI 10.1111/FEBS.14392 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5YIO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-OCT-17. REMARK 100 THE DEPOSITION ID IS D_1300005358. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 7.4 REMARK 210 IONIC STRENGTH : 200MM NACL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.4 MM [U-15N] SUBUNIT EPSILON REMARK 210 OF THE MYCOBACTERIUM REMARK 210 TUBERCULOSIS F-ATP SYNTHASE, 90% REMARK 210 H2O/10% D2O; 0.4 MM [U-13C; U- REMARK 210 15N] SUBUNIT EPSILON OF THE REMARK 210 MYCOBACTERIUM TUBERCULOSIS F-ATP REMARK 210 SYNTHASE, 90% H2O/10% D2O; 0.4 REMARK 210 MM [U-13C; U-15N] SUBUNIT REMARK 210 EPSILON OF THE MYCOBACTERIUM REMARK 210 TUBERCULOSIS F-ATP SYNTHASE, 100% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D 1H-15N NOESY; REMARK 210 3D 1H-13C NOESY; 3D HCCH-TOCSY; REMARK 210 3D HNCACB; 3D CBCA(CO)NH; 3D REMARK 210 HN(CO)CA REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN, NMRPIPE, SPARKY, CYANA REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 500 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ILE A 15 -69.28 -95.32 REMARK 500 1 THR A 27 -167.53 -129.97 REMARK 500 1 ARG A 37 71.24 60.21 REMARK 500 1 ALA A 49 -178.70 60.53 REMARK 500 1 GLU A 58 -85.70 -143.16 REMARK 500 1 ASP A 60 79.13 -157.77 REMARK 500 1 VAL A 77 144.79 -29.26 REMARK 500 1 SER A 83 76.28 -152.96 REMARK 500 1 GLU A 89 33.73 -96.85 REMARK 500 2 ARG A 13 -167.20 179.32 REMARK 500 2 ILE A 15 -68.77 -100.03 REMARK 500 2 ALA A 49 -174.53 62.76 REMARK 500 2 GLU A 58 -86.09 -148.75 REMARK 500 2 ASP A 60 92.06 -161.24 REMARK 500 2 VAL A 77 143.25 -28.49 REMARK 500 2 SER A 83 84.23 -159.03 REMARK 500 2 GLU A 89 33.67 -96.02 REMARK 500 3 ILE A 15 -69.77 -97.49 REMARK 500 3 ARG A 37 42.50 -107.59 REMARK 500 3 ALA A 49 178.18 60.15 REMARK 500 3 GLU A 58 -84.18 -148.17 REMARK 500 3 VAL A 77 142.78 -28.92 REMARK 500 3 SER A 83 77.43 -150.22 REMARK 500 3 GLU A 89 33.70 -96.30 REMARK 500 3 SER A 101 42.20 72.17 REMARK 500 4 ALA A 10 -169.71 -106.20 REMARK 500 4 ARG A 13 -169.86 179.13 REMARK 500 4 ILE A 15 -68.17 -94.07 REMARK 500 4 ARG A 37 32.66 -98.64 REMARK 500 4 LEU A 45 -177.52 -63.53 REMARK 500 4 ALA A 49 -173.88 60.05 REMARK 500 4 GLU A 58 -85.22 -142.51 REMARK 500 4 ASP A 60 82.42 -161.29 REMARK 500 4 VAL A 77 143.22 -29.84 REMARK 500 4 SER A 83 77.69 -159.99 REMARK 500 4 GLU A 89 33.81 -96.01 REMARK 500 4 SER A 101 41.85 70.21 REMARK 500 4 ILE A 120 178.31 -55.63 REMARK 500 5 ALA A 10 -168.98 -106.26 REMARK 500 5 ARG A 13 -172.50 -174.97 REMARK 500 5 ARG A 37 61.71 60.36 REMARK 500 5 ALA A 49 169.25 58.64 REMARK 500 5 GLU A 58 -38.86 -170.00 REMARK 500 5 ASP A 60 126.34 -177.67 REMARK 500 5 VAL A 77 145.05 -29.45 REMARK 500 5 SER A 83 83.58 -155.89 REMARK 500 5 GLU A 89 33.74 -98.47 REMARK 500 5 ILE A 120 178.96 -53.24 REMARK 500 6 ALA A 10 -163.34 -104.53 REMARK 500 6 ARG A 13 -179.45 -176.66 REMARK 500 REMARK 500 THIS ENTRY HAS 203 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 36121 RELATED DB: BMRB REMARK 900 NMR SOLUTION STRUCTURE OF SUBUNIT EPSILON OF THE MYCOBACTERIUM REMARK 900 TUBERCULOSIS F-ATP SYNTHASE DBREF 5YIO A 1 121 UNP P9WPV1 ATPE_MYCTU 1 121 SEQRES 1 A 121 MET ALA GLU LEU ASN VAL GLU ILE VAL ALA VAL ASP ARG SEQRES 2 A 121 ASN ILE TRP SER GLY THR ALA LYS PHE LEU PHE THR ARG SEQRES 3 A 121 THR THR VAL GLY GLU ILE GLY ILE LEU PRO ARG HIS ILE SEQRES 4 A 121 PRO LEU VAL ALA GLN LEU VAL ASP ASP ALA MET VAL ARG SEQRES 5 A 121 VAL GLU ARG GLU GLY GLU LYS ASP LEU ARG ILE ALA VAL SEQRES 6 A 121 ASP GLY GLY PHE LEU SER VAL THR GLU GLU GLY VAL SER SEQRES 7 A 121 ILE LEU ALA GLU SER ALA GLU PHE GLU SER GLU ILE ASP SEQRES 8 A 121 GLU ALA ALA ALA LYS GLN ASP SER GLU SER ASP ASP PRO SEQRES 9 A 121 ARG ILE ALA ALA ARG GLY ARG ALA ARG LEU ARG ALA VAL SEQRES 10 A 121 GLY ALA ILE ASP HELIX 1 AA1 PHE A 86 ILE A 90 5 5 HELIX 2 AA2 ASP A 91 GLU A 100 1 10 HELIX 3 AA3 ASP A 103 GLY A 118 1 16 SHEET 1 AA1 5 ASN A 14 ALA A 20 0 SHEET 2 AA1 5 LEU A 4 VAL A 9 -1 N ILE A 8 O ILE A 15 SHEET 3 AA1 5 VAL A 77 ALA A 81 1 O ALA A 81 N VAL A 9 SHEET 4 AA1 5 GLY A 68 VAL A 72 -1 N SER A 71 O SER A 78 SHEET 5 AA1 5 LEU A 41 GLN A 44 -1 N LEU A 41 O VAL A 72 SHEET 1 AA2 4 GLY A 30 ILE A 34 0 SHEET 2 AA2 4 PHE A 22 THR A 27 -1 N THR A 25 O ILE A 32 SHEET 3 AA2 4 MET A 50 VAL A 53 -1 O VAL A 53 N PHE A 22 SHEET 4 AA2 4 LEU A 61 ILE A 63 -1 O ILE A 63 N MET A 50 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1