HEADER SIGNALING PROTEIN 06-OCT-17 5YIP TITLE CRYSTAL STRUCTURE OF ANKG LIR/GABARAPL1 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: GAMMA-AMINOBUTYRIC ACID RECEPTOR-ASSOCIATED PROTEIN-LIKE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GABA(A) RECEPTOR-ASSOCIATED PROTEIN-LIKE 1,GLANDULAR COMPND 5 EPITHELIAL CELL PROTEIN 1,GEC-1; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: ANKYRIN-3; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: UNP RESIDUES 1985-2010; COMPND 11 SYNONYM: ANK-3,ANKYRIN-G; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: GABARAPL1, APG8L, ATG8L, GEC1, MNCB-0091; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 10 ORGANISM_COMMON: RAT; SOURCE 11 ORGANISM_TAXID: 10116; SOURCE 12 GENE: ANK3; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS AUTOPHAGY, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.LI,R.ZHU,K.CHEN,H.ZHENG,C.YUAN,H.ZHANG,C.WANG,M.ZHANG REVDAT 4 22-NOV-23 5YIP 1 REMARK REVDAT 3 01-AUG-18 5YIP 1 JRNL REVDAT 2 04-JUL-18 5YIP 1 JRNL REVDAT 1 23-MAY-18 5YIP 0 JRNL AUTH J.LI,R.ZHU,K.CHEN,H.ZHENG,H.ZHAO,C.YUAN,H.ZHANG,C.WANG, JRNL AUTH 2 M.ZHANG JRNL TITL POTENT AND SPECIFIC ATG8-TARGETING AUTOPHAGY INHIBITORY JRNL TITL 2 PEPTIDES FROM GIANT ANKYRINS. JRNL REF NAT. CHEM. BIOL. V. 14 778 2018 JRNL REFN ESSN 1552-4469 JRNL PMID 29867141 JRNL DOI 10.1038/S41589-018-0082-8 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.12_2829 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.12 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 18042 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 910 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 30.1215 - 3.3541 1.00 3038 153 0.1567 0.1983 REMARK 3 2 3.3541 - 2.6628 1.00 2880 134 0.1894 0.2083 REMARK 3 3 2.6628 - 2.3263 1.00 2860 145 0.1935 0.2728 REMARK 3 4 2.3263 - 2.1137 1.00 2802 158 0.2014 0.2328 REMARK 3 5 2.1137 - 1.9622 1.00 2771 165 0.2126 0.2454 REMARK 3 6 1.9622 - 1.8465 1.00 2781 155 0.2355 0.2682 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.600 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.51 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 1212 REMARK 3 ANGLE : 1.113 1644 REMARK 3 CHIRALITY : 0.073 169 REMARK 3 PLANARITY : 0.008 217 REMARK 3 DIHEDRAL : 9.000 966 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -5 THROUGH 3 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.9103 41.6953 69.4564 REMARK 3 T TENSOR REMARK 3 T11: 0.4599 T22: 0.2721 REMARK 3 T33: 0.2991 T12: -0.0816 REMARK 3 T13: 0.0349 T23: 0.0554 REMARK 3 L TENSOR REMARK 3 L11: 7.9242 L22: 5.1158 REMARK 3 L33: 9.1013 L12: -0.0213 REMARK 3 L13: -0.4989 L23: 6.8128 REMARK 3 S TENSOR REMARK 3 S11: -0.2418 S12: -0.1709 S13: -0.5209 REMARK 3 S21: 0.6913 S22: 0.1642 S23: 0.2552 REMARK 3 S31: 0.4105 S32: 0.0880 S33: 0.0464 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 4 THROUGH 24 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.3676 56.7090 79.8035 REMARK 3 T TENSOR REMARK 3 T11: 0.5864 T22: 0.4032 REMARK 3 T33: 0.2008 T12: -0.1788 REMARK 3 T13: 0.0217 T23: -0.0686 REMARK 3 L TENSOR REMARK 3 L11: 6.3176 L22: 7.8108 REMARK 3 L33: 5.0210 L12: -3.4493 REMARK 3 L13: 0.3439 L23: -2.7325 REMARK 3 S TENSOR REMARK 3 S11: -0.0206 S12: -0.9283 S13: 0.3043 REMARK 3 S21: 1.0117 S22: -0.0041 S23: -0.1265 REMARK 3 S31: -0.2682 S32: -0.0172 S33: 0.0226 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 25 THROUGH 47 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.8020 56.9502 69.1786 REMARK 3 T TENSOR REMARK 3 T11: 0.3693 T22: 0.1809 REMARK 3 T33: 0.2638 T12: -0.1440 REMARK 3 T13: -0.0191 T23: 0.0088 REMARK 3 L TENSOR REMARK 3 L11: 4.5488 L22: 5.9667 REMARK 3 L33: 4.4285 L12: -1.6612 REMARK 3 L13: -1.2832 L23: 3.5112 REMARK 3 S TENSOR REMARK 3 S11: 0.0554 S12: -0.5322 S13: 0.5079 REMARK 3 S21: 0.5866 S22: 0.0485 S23: -0.6014 REMARK 3 S31: -0.1232 S32: 0.2592 S33: -0.1103 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 48 THROUGH 117 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.0931 56.3108 62.6985 REMARK 3 T TENSOR REMARK 3 T11: 0.2633 T22: 0.1271 REMARK 3 T33: 0.1995 T12: -0.1038 REMARK 3 T13: -0.0240 T23: 0.0147 REMARK 3 L TENSOR REMARK 3 L11: 2.7139 L22: 2.0709 REMARK 3 L33: 2.8414 L12: -1.0116 REMARK 3 L13: -0.9058 L23: 0.7440 REMARK 3 S TENSOR REMARK 3 S11: 0.0967 S12: -0.0426 S13: 0.1643 REMARK 3 S21: 0.1946 S22: -0.1808 S23: -0.0689 REMARK 3 S31: -0.0478 S32: 0.0559 S33: 0.0727 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1986 THROUGH 1993 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.3579 65.4623 74.2208 REMARK 3 T TENSOR REMARK 3 T11: 0.5828 T22: 0.2805 REMARK 3 T33: 0.3446 T12: -0.2362 REMARK 3 T13: -0.0377 T23: -0.0606 REMARK 3 L TENSOR REMARK 3 L11: 4.8036 L22: 8.1881 REMARK 3 L33: 5.4653 L12: 4.4617 REMARK 3 L13: -0.0347 L23: 1.0385 REMARK 3 S TENSOR REMARK 3 S11: 0.3379 S12: -0.2716 S13: -0.0911 REMARK 3 S21: 0.6916 S22: -0.2371 S23: -0.0801 REMARK 3 S31: 0.1141 S32: 0.1066 S33: -0.0315 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1994 THROUGH 2007 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.9360 70.3778 56.1170 REMARK 3 T TENSOR REMARK 3 T11: 0.5969 T22: 0.2570 REMARK 3 T33: 0.4195 T12: -0.1915 REMARK 3 T13: 0.0510 T23: 0.0681 REMARK 3 L TENSOR REMARK 3 L11: 6.3997 L22: 8.6721 REMARK 3 L33: 6.0925 L12: 2.3160 REMARK 3 L13: 0.3919 L23: 2.8291 REMARK 3 S TENSOR REMARK 3 S11: -0.2295 S12: 0.4452 S13: 0.3379 REMARK 3 S21: 0.0659 S22: -0.0002 S23: -0.1555 REMARK 3 S31: -0.1759 S32: -0.0337 S33: 0.2663 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5YIP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-OCT-17. REMARK 100 THE DEPOSITION ID IS D_1300005040. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-OCT-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97774 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18077 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 15.90 REMARK 200 R MERGE (I) : 0.08400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 14.10 REMARK 200 R MERGE FOR SHELL (I) : 0.88600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2R2Q REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.85 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 35% W/V PENTAERYTHRITOL ETHOXYLATE 797 REMARK 280 (15/4 EO/OH), 0.2 M AMMONIUM SULFATE, 0.1 M SODIUM ACETATE (PH REMARK 280 4.6), VAPOR DIFFUSION, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+1/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 21.30033 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 42.60067 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 21.30033 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 42.60067 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 21.30033 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 42.60067 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 21.30033 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 42.60067 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 319 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 357 LIES ON A SPECIAL POSITION. REMARK 375 HOH B2102 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA B 2008 REMARK 465 PRO B 2009 REMARK 465 SER B 2010 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 7 CG CD OE1 OE2 REMARK 470 TYR A 13 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 16 CG CD CE NZ REMARK 470 LYS A 20 CG CD CE NZ REMARK 470 LYS A 23 CG CD CE NZ REMARK 470 ARG A 40 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 47 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 71 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 96 CG CD OE1 OE2 REMARK 470 LYS A 117 CE NZ REMARK 470 GLU B1986 CG CD OE1 OE2 REMARK 470 GLU B1995 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP B1987 68.27 -150.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 201 DBREF 5YIP A 1 117 UNP Q8R3R8 GBRL1_MOUSE 1 117 DBREF 5YIP B 1985 2010 UNP O70511 ANK3_RAT 1985 2010 SEQADV 5YIP GLY A -5 UNP Q8R3R8 EXPRESSION TAG SEQADV 5YIP PRO A -4 UNP Q8R3R8 EXPRESSION TAG SEQADV 5YIP GLY A -3 UNP Q8R3R8 EXPRESSION TAG SEQADV 5YIP SER A -2 UNP Q8R3R8 EXPRESSION TAG SEQADV 5YIP GLU A -1 UNP Q8R3R8 EXPRESSION TAG SEQADV 5YIP PHE A 0 UNP Q8R3R8 EXPRESSION TAG SEQRES 1 A 123 GLY PRO GLY SER GLU PHE MET LYS PHE GLN TYR LYS GLU SEQRES 2 A 123 ASP HIS PRO PHE GLU TYR ARG LYS LYS GLU GLY GLU LYS SEQRES 3 A 123 ILE ARG LYS LYS TYR PRO ASP ARG VAL PRO VAL ILE VAL SEQRES 4 A 123 GLU LYS ALA PRO LYS ALA ARG VAL PRO ASP LEU ASP LYS SEQRES 5 A 123 ARG LYS TYR LEU VAL PRO SER ASP LEU THR VAL GLY GLN SEQRES 6 A 123 PHE TYR PHE LEU ILE ARG LYS ARG ILE HIS LEU ARG PRO SEQRES 7 A 123 GLU ASP ALA LEU PHE PHE PHE VAL ASN ASN THR ILE PRO SEQRES 8 A 123 PRO THR SER ALA THR MET GLY GLN LEU TYR GLU ASP ASN SEQRES 9 A 123 HIS GLU GLU ASP TYR PHE LEU TYR VAL ALA TYR SER ASP SEQRES 10 A 123 GLU SER VAL TYR GLY LYS SEQRES 1 B 26 PRO GLU ASP ASP TRP THR GLU PHE SER SER GLU GLU ILE SEQRES 2 B 26 ARG GLU ALA ARG GLN ALA ALA ALA SER HIS ALA PRO SER HET GOL A 201 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL C3 H8 O3 FORMUL 4 HOH *63(H2 O) HELIX 1 AA1 PHE A 3 HIS A 9 1 7 HELIX 2 AA2 PRO A 10 TYR A 25 1 16 HELIX 3 AA3 THR A 56 HIS A 69 1 14 HELIX 4 AA4 THR A 90 HIS A 99 1 10 HELIX 5 AA5 SER B 1993 ALA B 2004 1 12 SHEET 1 AA1 4 LYS A 48 PRO A 52 0 SHEET 2 AA1 4 ARG A 28 LYS A 35 -1 N VAL A 31 O TYR A 49 SHEET 3 AA1 4 LEU A 105 SER A 110 1 O VAL A 107 N ILE A 32 SHEET 4 AA1 4 PHE A 77 PHE A 79 -1 N PHE A 77 O SER A 110 SITE 1 AC1 3 LYS A 6 PHE A 11 ARG A 14 CRYST1 104.172 104.172 63.901 90.00 90.00 120.00 P 64 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009600 0.005542 0.000000 0.00000 SCALE2 0.000000 0.011085 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015649 0.00000