HEADER DNA BINDING PROTEIN/DNA 07-OCT-17 5YJ3 TITLE CRYSTAL STRUCTURE OF TZAP AND TELOMERIC DNA COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'- COMPND 3 D(*CP*CP*TP*AP*AP*CP*CP*CP*TP*AP*AP*CP*CP*CP*TP*AP*AP*C)-3'); COMPND 4 CHAIN: A; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (5'- COMPND 8 D(*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*G)-3'); COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: TELOMERE ZINC FINGER-ASSOCIATED PROTEIN; COMPND 13 CHAIN: C, D; COMPND 14 FRAGMENT: UNP RESIDUES 516-620; COMPND 15 SYNONYM: TZAP,KRUEPPEL-RELATED ZINC FINGER PROTEIN 3,HKR3,ZINC FINGER COMPND 16 AND BTB DOMAIN-CONTAINING PROTEIN 48,ZINC FINGER PROTEIN 855; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 8 ORGANISM_TAXID: 32630; SOURCE 9 MOL_ID: 3; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 GENE: ZBTB48, HKR3, TZAP, ZNF855; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TELOMERIC DNA BINDING PROTEIN, DNA BINDING PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR F.LI,Y.ZHAO REVDAT 3 22-NOV-23 5YJ3 1 REMARK REVDAT 2 17-JAN-18 5YJ3 1 JRNL REVDAT 1 06-DEC-17 5YJ3 0 JRNL AUTH Y.ZHAO,G.ZHANG,C.HE,Y.MEI,Y.SHI,F.LI JRNL TITL THE 11TH C2H2 ZINC FINGER AND AN ADJACENT C-TERMINAL ARM ARE JRNL TITL 2 RESPONSIBLE FOR TZAP RECOGNITION OF TELOMERIC DNA. JRNL REF CELL RES. V. 28 130 2018 JRNL REFN ISSN 1748-7838 JRNL PMID 29134956 JRNL DOI 10.1038/CR.2017.141 REMARK 2 REMARK 2 RESOLUTION. 2.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.28 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 9190 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.228 REMARK 3 R VALUE (WORKING SET) : 0.226 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.850 REMARK 3 FREE R VALUE TEST SET COUNT : 446 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.2800 - 4.1003 0.98 3061 144 0.2054 0.2377 REMARK 3 2 4.1003 - 3.2561 0.98 2877 151 0.2411 0.2942 REMARK 3 3 3.2561 - 2.8449 0.99 2806 151 0.3046 0.3460 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.390 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.780 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 76.05 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 98.45 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 1936 REMARK 3 ANGLE : 0.590 2754 REMARK 3 CHIRALITY : 0.035 292 REMARK 3 PLANARITY : 0.003 235 REMARK 3 DIHEDRAL : 26.058 1034 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 18) REMARK 3 ORIGIN FOR THE GROUP (A): 5.4901 37.8272 -11.2463 REMARK 3 T TENSOR REMARK 3 T11: 0.7802 T22: 1.4099 REMARK 3 T33: 0.5946 T12: 0.1540 REMARK 3 T13: 0.0427 T23: 0.0786 REMARK 3 L TENSOR REMARK 3 L11: 0.0636 L22: 1.9752 REMARK 3 L33: 6.8177 L12: -0.4806 REMARK 3 L13: 2.6762 L23: -1.8911 REMARK 3 S TENSOR REMARK 3 S11: 0.1683 S12: -0.2455 S13: -0.4193 REMARK 3 S21: 0.6274 S22: 0.0579 S23: 0.3827 REMARK 3 S31: 0.5751 S32: -0.4614 S33: -0.1125 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 18) REMARK 3 ORIGIN FOR THE GROUP (A): 4.1356 37.1791 -8.6219 REMARK 3 T TENSOR REMARK 3 T11: 0.9092 T22: 1.2620 REMARK 3 T33: 0.5961 T12: 0.2195 REMARK 3 T13: -0.0465 T23: 0.1152 REMARK 3 L TENSOR REMARK 3 L11: -0.2072 L22: 1.9411 REMARK 3 L33: 6.3228 L12: -0.6454 REMARK 3 L13: 3.8290 L23: -3.7778 REMARK 3 S TENSOR REMARK 3 S11: -0.2791 S12: -0.3663 S13: -0.3615 REMARK 3 S21: 0.9879 S22: 0.4538 S23: 0.1978 REMARK 3 S31: -1.2356 S32: -0.9298 S33: -0.1238 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 575 THROUGH 618 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.8393 50.7953 -35.7282 REMARK 3 T TENSOR REMARK 3 T11: 0.3775 T22: 0.9417 REMARK 3 T33: 0.5346 T12: 0.1225 REMARK 3 T13: -0.1899 T23: -0.0487 REMARK 3 L TENSOR REMARK 3 L11: 5.3486 L22: 6.2220 REMARK 3 L33: 5.3991 L12: 0.4469 REMARK 3 L13: -2.5630 L23: 1.5756 REMARK 3 S TENSOR REMARK 3 S11: -0.1113 S12: 0.1802 S13: 0.2340 REMARK 3 S21: -0.2570 S22: 0.0542 S23: 0.2661 REMARK 3 S31: 0.0851 S32: -0.1968 S33: -0.0183 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 549 THROUGH 574 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.7615 17.6903 -31.2166 REMARK 3 T TENSOR REMARK 3 T11: 0.6193 T22: 1.7150 REMARK 3 T33: 1.3391 T12: -0.1629 REMARK 3 T13: 0.0581 T23: -0.1062 REMARK 3 L TENSOR REMARK 3 L11: 3.4761 L22: 2.9151 REMARK 3 L33: 8.8580 L12: 2.3258 REMARK 3 L13: 4.5356 L23: 1.2302 REMARK 3 S TENSOR REMARK 3 S11: 0.2619 S12: -0.2889 S13: 0.9787 REMARK 3 S21: -0.3626 S22: 0.1184 S23: -0.1324 REMARK 3 S31: 0.5548 S32: -0.1678 S33: -0.5944 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 575 THROUGH 614 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.3231 31.2151 -17.8238 REMARK 3 T TENSOR REMARK 3 T11: 0.4832 T22: 0.8930 REMARK 3 T33: 0.5077 T12: -0.1822 REMARK 3 T13: -0.1308 T23: 0.0518 REMARK 3 L TENSOR REMARK 3 L11: 5.6517 L22: 7.7281 REMARK 3 L33: 9.1841 L12: -4.4117 REMARK 3 L13: -1.1754 L23: -1.0057 REMARK 3 S TENSOR REMARK 3 S11: 0.0460 S12: -0.0583 S13: -0.2234 REMARK 3 S21: 0.7796 S22: -0.2589 S23: -0.5016 REMARK 3 S31: -0.5203 S32: -0.3900 S33: 0.1472 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 549 THROUGH 574 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.4274 47.9019 -52.1812 REMARK 3 T TENSOR REMARK 3 T11: 1.4426 T22: 1.1968 REMARK 3 T33: 1.0556 T12: 0.0610 REMARK 3 T13: 0.2433 T23: 0.0227 REMARK 3 L TENSOR REMARK 3 L11: 1.8892 L22: 3.5008 REMARK 3 L33: 2.9050 L12: 0.9673 REMARK 3 L13: 1.9450 L23: -0.6889 REMARK 3 S TENSOR REMARK 3 S11: 0.7293 S12: 1.1140 S13: 0.5256 REMARK 3 S21: 0.5775 S22: -0.8091 S23: -0.3124 REMARK 3 S31: -1.7427 S32: 0.6272 S33: 0.3145 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5YJ3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-OCT-17. REMARK 100 THE DEPOSITION ID IS D_1300005371. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-MAY-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9428 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.845 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 23.70 REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 21.20 REMARK 200 R MERGE FOR SHELL (I) : 0.98300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1W0T REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M IMIDAZOLE-MALATE PH 8.5, 20% PEG REMARK 280 4K, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 113.11450 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 28.35650 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 28.35650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 169.67175 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 28.35650 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 28.35650 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 56.55725 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 28.35650 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 28.35650 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 169.67175 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 28.35650 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 28.35650 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 56.55725 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 113.11450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS C 514 REMARK 465 MET C 515 REMARK 465 THR C 516 REMARK 465 GLY C 517 REMARK 465 GLU C 518 REMARK 465 ARG C 519 REMARK 465 PRO C 520 REMARK 465 PHE C 521 REMARK 465 SER C 522 REMARK 465 CYS C 523 REMARK 465 GLU C 524 REMARK 465 PHE C 525 REMARK 465 CYS C 526 REMARK 465 GLU C 527 REMARK 465 GLN C 528 REMARK 465 ARG C 529 REMARK 465 PHE C 530 REMARK 465 THR C 531 REMARK 465 GLU C 532 REMARK 465 LYS C 533 REMARK 465 GLY C 534 REMARK 465 PRO C 535 REMARK 465 LEU C 536 REMARK 465 LEU C 537 REMARK 465 ARG C 538 REMARK 465 HIS C 539 REMARK 465 VAL C 540 REMARK 465 ALA C 541 REMARK 465 SER C 542 REMARK 465 ARG C 543 REMARK 465 HIS C 544 REMARK 465 GLN C 545 REMARK 465 GLU C 546 REMARK 465 GLY C 547 REMARK 465 ARG C 548 REMARK 465 GLU C 619 REMARK 465 ASP C 620 REMARK 465 HIS D 514 REMARK 465 MET D 515 REMARK 465 THR D 516 REMARK 465 GLY D 517 REMARK 465 GLU D 518 REMARK 465 ARG D 519 REMARK 465 PRO D 520 REMARK 465 PHE D 521 REMARK 465 SER D 522 REMARK 465 CYS D 523 REMARK 465 GLU D 524 REMARK 465 PHE D 525 REMARK 465 CYS D 526 REMARK 465 GLU D 527 REMARK 465 GLN D 528 REMARK 465 ARG D 529 REMARK 465 PHE D 530 REMARK 465 THR D 531 REMARK 465 GLU D 532 REMARK 465 LYS D 533 REMARK 465 GLY D 534 REMARK 465 PRO D 535 REMARK 465 LEU D 536 REMARK 465 LEU D 537 REMARK 465 ARG D 538 REMARK 465 HIS D 539 REMARK 465 VAL D 540 REMARK 465 ALA D 541 REMARK 465 SER D 542 REMARK 465 ARG D 543 REMARK 465 HIS D 544 REMARK 465 GLN D 545 REMARK 465 GLU D 546 REMARK 465 GLY D 547 REMARK 465 ARG D 548 REMARK 465 ASN D 615 REMARK 465 LEU D 616 REMARK 465 ILE D 617 REMARK 465 ILE D 618 REMARK 465 GLU D 619 REMARK 465 ASP D 620 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE C 551 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ILE C 554 CG1 CG2 CD1 REMARK 470 LYS C 557 CG CD CE NZ REMARK 470 THR C 558 CG2 REMARK 470 VAL C 562 CG1 CG2 REMARK 470 ARG C 566 CG CD NE CZ NH1 NH2 REMARK 470 VAL C 569 CG1 CG2 REMARK 470 ARG C 570 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 573 CG CD CE NZ REMARK 470 ILE C 618 CG1 CG2 CD1 REMARK 470 HIS D 550 CG ND1 CD2 CE1 NE2 REMARK 470 PHE D 551 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ILE D 554 CG1 CG2 CD1 REMARK 470 LYS D 557 CG CD CE NZ REMARK 470 THR D 558 CG2 REMARK 470 LYS D 560 CD CE NZ REMARK 470 VAL D 562 CG2 REMARK 470 ARG D 566 CD NE CZ NH1 NH2 REMARK 470 VAL D 569 CG1 CG2 REMARK 470 ARG D 570 CG CD NE CZ NH1 NH2 REMARK 470 ARG D 571 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 573 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC A 7 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DT A 15 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 DT B 16 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS C 560 -77.33 -85.50 REMARK 500 ARG C 602 16.53 -144.03 REMARK 500 ASN C 607 82.43 -151.16 REMARK 500 GLN D 553 -64.29 -139.57 REMARK 500 LYS D 560 -83.88 -87.83 REMARK 500 HIS D 572 13.94 -147.32 REMARK 500 LYS D 573 -109.38 60.52 REMARK 500 GLU D 604 -79.69 -96.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 701 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 580 SG REMARK 620 2 CYS C 583 SG 107.9 REMARK 620 3 HIS C 596 NE2 115.2 105.7 REMARK 620 4 HIS C 600 NE2 120.0 108.5 98.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 702 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 555 SG REMARK 620 2 HIS D 568 NE2 85.2 REMARK 620 3 HIS D 572 NE2 118.5 94.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 701 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 580 SG REMARK 620 2 CYS D 583 SG 107.5 REMARK 620 3 HIS D 596 NE2 125.4 104.5 REMARK 620 4 HIS D 600 NE2 109.2 102.6 105.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN C 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN C 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN D 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN D 702 DBREF 5YJ3 A 1 18 PDB 5YJ3 5YJ3 1 18 DBREF 5YJ3 B 1 18 PDB 5YJ3 5YJ3 1 18 DBREF 5YJ3 C 516 620 UNP P10074 TZAP_HUMAN 516 620 DBREF 5YJ3 D 516 620 UNP P10074 TZAP_HUMAN 516 620 SEQADV 5YJ3 HIS C 514 UNP P10074 EXPRESSION TAG SEQADV 5YJ3 MET C 515 UNP P10074 EXPRESSION TAG SEQADV 5YJ3 HIS D 514 UNP P10074 EXPRESSION TAG SEQADV 5YJ3 MET D 515 UNP P10074 EXPRESSION TAG SEQRES 1 A 18 DC DC DT DA DA DC DC DC DT DA DA DC DC SEQRES 2 A 18 DC DT DA DA DC SEQRES 1 B 18 DG DG DT DT DA DG DG DG DT DT DA DG DG SEQRES 2 B 18 DG DT DT DA DG SEQRES 1 C 107 HIS MET THR GLY GLU ARG PRO PHE SER CYS GLU PHE CYS SEQRES 2 C 107 GLU GLN ARG PHE THR GLU LYS GLY PRO LEU LEU ARG HIS SEQRES 3 C 107 VAL ALA SER ARG HIS GLN GLU GLY ARG PRO HIS PHE CYS SEQRES 4 C 107 GLN ILE CYS GLY LYS THR PHE LYS ALA VAL GLU GLN LEU SEQRES 5 C 107 ARG VAL HIS VAL ARG ARG HIS LYS GLY VAL ARG LYS PHE SEQRES 6 C 107 GLU CYS THR GLU CYS GLY TYR LYS PHE THR ARG GLN ALA SEQRES 7 C 107 HIS LEU ARG ARG HIS MET GLU ILE HIS ASP ARG VAL GLU SEQRES 8 C 107 ASN TYR ASN PRO ARG GLN ARG LYS LEU ARG ASN LEU ILE SEQRES 9 C 107 ILE GLU ASP SEQRES 1 D 107 HIS MET THR GLY GLU ARG PRO PHE SER CYS GLU PHE CYS SEQRES 2 D 107 GLU GLN ARG PHE THR GLU LYS GLY PRO LEU LEU ARG HIS SEQRES 3 D 107 VAL ALA SER ARG HIS GLN GLU GLY ARG PRO HIS PHE CYS SEQRES 4 D 107 GLN ILE CYS GLY LYS THR PHE LYS ALA VAL GLU GLN LEU SEQRES 5 D 107 ARG VAL HIS VAL ARG ARG HIS LYS GLY VAL ARG LYS PHE SEQRES 6 D 107 GLU CYS THR GLU CYS GLY TYR LYS PHE THR ARG GLN ALA SEQRES 7 D 107 HIS LEU ARG ARG HIS MET GLU ILE HIS ASP ARG VAL GLU SEQRES 8 D 107 ASN TYR ASN PRO ARG GLN ARG LYS LEU ARG ASN LEU ILE SEQRES 9 D 107 ILE GLU ASP HET ZN C 701 1 HET ZN C 702 1 HET ZN D 701 1 HET ZN D 702 1 HETNAM ZN ZINC ION FORMUL 5 ZN 4(ZN 2+) HELIX 1 AA1 VAL C 562 ARG C 571 1 10 HELIX 2 AA2 ARG C 589 ASP C 601 1 13 HELIX 3 AA3 ALA D 561 ARG D 571 1 11 HELIX 4 AA4 ARG D 589 VAL D 603 1 15 SHEET 1 AA1 2 HIS C 550 PHE C 551 0 SHEET 2 AA1 2 THR C 558 PHE C 559 -1 O PHE C 559 N HIS C 550 SHEET 1 AA2 2 PHE C 578 GLU C 579 0 SHEET 2 AA2 2 LYS C 586 PHE C 587 -1 O PHE C 587 N PHE C 578 SHEET 1 AA3 2 HIS D 550 PHE D 551 0 SHEET 2 AA3 2 THR D 558 PHE D 559 -1 O PHE D 559 N HIS D 550 SHEET 1 AA4 2 PHE D 578 GLU D 579 0 SHEET 2 AA4 2 LYS D 586 PHE D 587 -1 O PHE D 587 N PHE D 578 LINK SG CYS C 555 ZN ZN C 702 1555 1555 2.43 LINK SG CYS C 580 ZN ZN C 701 1555 1555 2.24 LINK SG CYS C 583 ZN ZN C 701 1555 1555 2.23 LINK NE2 HIS C 596 ZN ZN C 701 1555 1555 1.91 LINK NE2 HIS C 600 ZN ZN C 701 1555 1555 2.11 LINK SG CYS D 555 ZN ZN D 702 1555 1555 2.54 LINK NE2 HIS D 568 ZN ZN D 702 1555 1555 2.61 LINK NE2 HIS D 572 ZN ZN D 702 1555 1555 2.12 LINK SG CYS D 580 ZN ZN D 701 1555 1555 2.26 LINK SG CYS D 583 ZN ZN D 701 1555 1555 2.26 LINK NE2 HIS D 596 ZN ZN D 701 1555 1555 1.95 LINK NE2 HIS D 600 ZN ZN D 701 1555 1555 1.97 SITE 1 AC1 4 CYS C 580 CYS C 583 HIS C 596 HIS C 600 SITE 1 AC2 4 CYS C 552 CYS C 555 HIS C 568 HIS C 572 SITE 1 AC3 4 CYS D 580 CYS D 583 HIS D 596 HIS D 600 SITE 1 AC4 4 CYS D 552 CYS D 555 HIS D 568 HIS D 572 CRYST1 56.713 56.713 226.229 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017633 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017633 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004420 0.00000