HEADER HYDROLASE 10-OCT-17 5YJD TITLE STRUCTURAL INSIGHTS INTO THE CRISPR-CAS-ASSOCIATED RIBONUCLEASE TITLE 2 ACTIVITY OF STAPHYLOCOCCUS EPIDERMIDIS CSM3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CSM3; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CSM3; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS EPIDERMIDIS RP62A; SOURCE 3 ORGANISM_TAXID: 176279; SOURCE 4 STRAIN: ATCC 35984 / RP62A; SOURCE 5 GENE: SERP2459; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CRISPR-ASSOCIATED PROTEINS, FERREDOXIN-LIKE FOLD, STAPHYLOCOCCUS KEYWDS 2 EPIDERMIDIS, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.Q.ZHAO,Y.J.GU,X.F.ZHU,W.CHENG REVDAT 2 27-MAR-24 5YJD 1 LINK REVDAT 1 17-OCT-18 5YJD 0 JRNL AUTH Y.Q.ZHAO,Y.J.GU,X.F.ZHU,W.CHENG JRNL TITL STRUCTURAL INSIGHTS INTO THE CRISPR-CAS-ASSOCIATED JRNL TITL 2 RIBONUCLEASE ACTIVITY OF STAPHYLOCOCCUS EPIDERMIDIS CSM3 AND JRNL TITL 3 CSM6 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.26 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.26 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 52.88 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 21671 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1143 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.26 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.32 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1375 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 86.94 REMARK 3 BIN R VALUE (WORKING SET) : 0.3730 REMARK 3 BIN FREE R VALUE SET COUNT : 70 REMARK 3 BIN FREE R VALUE : 0.3320 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2925 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 68 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 68.99 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.46000 REMARK 3 B22 (A**2) : 2.72000 REMARK 3 B33 (A**2) : -6.18000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.258 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.209 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.193 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 17.767 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3018 ; 0.012 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2817 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4052 ; 1.544 ; 1.953 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6539 ; 0.940 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 370 ; 6.388 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 159 ;39.242 ;24.403 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 561 ;15.929 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;14.946 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 444 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3377 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 624 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1489 ; 2.880 ; 2.696 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1488 ; 2.875 ; 2.692 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1856 ; 4.547 ; 4.015 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1857 ; 4.546 ; 4.021 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1529 ; 4.225 ; 3.132 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1530 ; 4.225 ; 3.135 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2197 ; 6.604 ; 4.534 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3137 ; 8.849 ;30.966 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3132 ; 8.855 ;30.909 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 3 216 B 3 216 11216 0.07 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 38 REMARK 3 ORIGIN FOR THE GROUP (A): -8.7347 -14.9221 -20.5473 REMARK 3 T TENSOR REMARK 3 T11: 0.1824 T22: 0.1631 REMARK 3 T33: 0.4056 T12: 0.0436 REMARK 3 T13: 0.0308 T23: 0.0218 REMARK 3 L TENSOR REMARK 3 L11: 2.5262 L22: 2.5031 REMARK 3 L33: 8.6421 L12: -0.3339 REMARK 3 L13: 0.4333 L23: -1.4915 REMARK 3 S TENSOR REMARK 3 S11: 0.0442 S12: 0.2880 S13: -0.0038 REMARK 3 S21: -0.3113 S22: -0.0916 S23: 0.0544 REMARK 3 S31: 0.3869 S32: 0.1440 S33: 0.0474 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 39 A 92 REMARK 3 ORIGIN FOR THE GROUP (A): 3.067 -18.098 -15.445 REMARK 3 T TENSOR REMARK 3 T11: 0.1932 T22: 0.2791 REMARK 3 T33: 0.4760 T12: 0.0186 REMARK 3 T13: 0.0699 T23: 0.0361 REMARK 3 L TENSOR REMARK 3 L11: 5.0986 L22: 2.5164 REMARK 3 L33: 4.0775 L12: -1.5244 REMARK 3 L13: 1.5582 L23: -1.8998 REMARK 3 S TENSOR REMARK 3 S11: 0.2766 S12: 0.2971 S13: -0.0484 REMARK 3 S21: -0.3073 S22: -0.3325 S23: -0.4716 REMARK 3 S31: 0.3005 S32: 0.6826 S33: 0.0559 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 93 A 157 REMARK 3 ORIGIN FOR THE GROUP (A): -11.6870 -12.7583 -24.1331 REMARK 3 T TENSOR REMARK 3 T11: 0.2195 T22: 0.1618 REMARK 3 T33: 0.3764 T12: 0.0124 REMARK 3 T13: 0.0114 T23: 0.0241 REMARK 3 L TENSOR REMARK 3 L11: 2.0736 L22: 1.8701 REMARK 3 L33: 5.3341 L12: -0.4550 REMARK 3 L13: 1.2512 L23: -1.4875 REMARK 3 S TENSOR REMARK 3 S11: 0.0041 S12: 0.2612 S13: 0.0988 REMARK 3 S21: -0.3564 S22: 0.0445 S23: 0.0374 REMARK 3 S31: -0.0153 S32: -0.1308 S33: -0.0486 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 158 A 197 REMARK 3 ORIGIN FOR THE GROUP (A): -0.4964 -7.7191 -15.1647 REMARK 3 T TENSOR REMARK 3 T11: 0.2028 T22: 0.2023 REMARK 3 T33: 0.5296 T12: -0.0744 REMARK 3 T13: 0.0152 T23: 0.0412 REMARK 3 L TENSOR REMARK 3 L11: 3.1709 L22: 3.2237 REMARK 3 L33: 8.2504 L12: -0.4792 REMARK 3 L13: 2.0649 L23: -2.0021 REMARK 3 S TENSOR REMARK 3 S11: -0.0784 S12: 0.3050 S13: 0.4748 REMARK 3 S21: 0.0369 S22: -0.1317 S23: -0.4213 REMARK 3 S31: -0.6392 S32: 0.8754 S33: 0.2101 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 198 A 214 REMARK 3 ORIGIN FOR THE GROUP (A): -8.0078 -10.2186 0.8531 REMARK 3 T TENSOR REMARK 3 T11: 0.3154 T22: 0.2558 REMARK 3 T33: 0.3427 T12: 0.0590 REMARK 3 T13: 0.0099 T23: -0.0937 REMARK 3 L TENSOR REMARK 3 L11: 6.6395 L22: 6.0445 REMARK 3 L33: 8.1490 L12: -2.1496 REMARK 3 L13: 1.4485 L23: -2.2745 REMARK 3 S TENSOR REMARK 3 S11: -0.2958 S12: -0.6188 S13: 0.5556 REMARK 3 S21: 0.6062 S22: 0.2295 S23: -0.2783 REMARK 3 S31: -0.9584 S32: -0.0192 S33: 0.0663 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 3 B 42 REMARK 3 ORIGIN FOR THE GROUP (A): -20.9828 16.0077 -23.7337 REMARK 3 T TENSOR REMARK 3 T11: 0.7119 T22: 0.1832 REMARK 3 T33: 0.4515 T12: 0.0990 REMARK 3 T13: 0.0479 T23: 0.0785 REMARK 3 L TENSOR REMARK 3 L11: 2.0357 L22: 3.0810 REMARK 3 L33: 7.2402 L12: -0.3414 REMARK 3 L13: -1.1283 L23: 0.2023 REMARK 3 S TENSOR REMARK 3 S11: -0.1642 S12: 0.1738 S13: 0.0413 REMARK 3 S21: 0.6913 S22: 0.2622 S23: -0.2463 REMARK 3 S31: -0.5960 S32: -0.0004 S33: -0.0980 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 43 B 114 REMARK 3 ORIGIN FOR THE GROUP (A): -26.6636 15.1603 -18.8840 REMARK 3 T TENSOR REMARK 3 T11: 0.8349 T22: 0.2217 REMARK 3 T33: 0.3376 T12: 0.0752 REMARK 3 T13: 0.1082 T23: 0.0711 REMARK 3 L TENSOR REMARK 3 L11: 1.4314 L22: 4.6443 REMARK 3 L33: 2.8392 L12: -2.0975 REMARK 3 L13: -0.9647 L23: 1.3489 REMARK 3 S TENSOR REMARK 3 S11: -0.4497 S12: -0.0783 S13: -0.0577 REMARK 3 S21: 1.0444 S22: 0.1908 S23: 0.3459 REMARK 3 S31: -0.0791 S32: -0.2385 S33: 0.2589 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 115 B 147 REMARK 3 ORIGIN FOR THE GROUP (A): -21.1220 10.9699 -39.2460 REMARK 3 T TENSOR REMARK 3 T11: 0.4023 T22: 0.2764 REMARK 3 T33: 0.3529 T12: -0.0349 REMARK 3 T13: 0.0517 T23: 0.0738 REMARK 3 L TENSOR REMARK 3 L11: 3.7877 L22: 3.5366 REMARK 3 L33: 3.0270 L12: -1.3875 REMARK 3 L13: -3.0784 L23: 2.3865 REMARK 3 S TENSOR REMARK 3 S11: 0.1597 S12: 0.4620 S13: 0.0094 REMARK 3 S21: 0.0472 S22: -0.2599 S23: 0.2052 REMARK 3 S31: -0.0838 S32: -0.4236 S33: 0.1002 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 148 B 200 REMARK 3 ORIGIN FOR THE GROUP (A): -29.6314 10.2921 -15.6543 REMARK 3 T TENSOR REMARK 3 T11: 0.9536 T22: 0.1678 REMARK 3 T33: 0.3993 T12: 0.1081 REMARK 3 T13: 0.2656 T23: 0.1080 REMARK 3 L TENSOR REMARK 3 L11: 4.1738 L22: 4.0695 REMARK 3 L33: 5.9685 L12: 0.1184 REMARK 3 L13: -0.4547 L23: 1.7062 REMARK 3 S TENSOR REMARK 3 S11: -0.4160 S12: 0.0364 S13: -0.3837 REMARK 3 S21: 1.2584 S22: 0.0859 S23: 0.5432 REMARK 3 S31: 0.2190 S32: -0.5115 S33: 0.3301 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 201 B 214 REMARK 3 ORIGIN FOR THE GROUP (A): -24.8097 9.4567 -1.0220 REMARK 3 T TENSOR REMARK 3 T11: 1.7037 T22: 0.5015 REMARK 3 T33: 0.4748 T12: 0.2534 REMARK 3 T13: 0.1506 T23: 0.2259 REMARK 3 L TENSOR REMARK 3 L11: 9.6725 L22: 8.3296 REMARK 3 L33: 6.1269 L12: 3.2592 REMARK 3 L13: 4.8503 L23: 4.4254 REMARK 3 S TENSOR REMARK 3 S11: -0.3470 S12: -0.7638 S13: -0.7678 REMARK 3 S21: 2.5438 S22: 0.0822 S23: -0.1838 REMARK 3 S31: 1.2858 S32: -0.0127 S33: 0.2648 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.00 REMARK 3 ION PROBE RADIUS : 0.70 REMARK 3 SHRINKAGE RADIUS : 0.70 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5YJD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-OCT-17. REMARK 100 THE DEPOSITION ID IS D_1300005381. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JUN-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9785 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21671 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.260 REMARK 200 RESOLUTION RANGE LOW (A) : 52.880 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 12.20 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.16M CALCIUM ACETATE, 14% (W/V) REMARK 280 PEG8000, 20% (W/V) GLYCEROL, 0.08M SODIUM CACODYLATE PH6.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y,-Z REMARK 290 8555 X,-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.31150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 77.98850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 52.88000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 77.98850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.31150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 52.88000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 29.31150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 52.88000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 77.98850 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 52.88000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 29.31150 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 77.98850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 90 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 22 REMARK 465 GLY A 23 REMARK 465 GLU A 24 REMARK 465 SER A 25 REMARK 465 SER A 26 REMARK 465 MET A 27 REMARK 465 ILE A 28 REMARK 465 GLY A 29 REMARK 465 ALA A 30 REMARK 465 ILE A 31 REMARK 465 GLY A 64 REMARK 465 LEU A 65 REMARK 465 LYS A 66 REMARK 465 MET A 67 REMARK 465 LYS A 68 REMARK 465 GLN A 69 REMARK 465 GLU A 70 REMARK 465 SER A 71 REMARK 465 HIS A 72 REMARK 465 ASN A 73 REMARK 465 GLN A 74 REMARK 465 THR A 126 REMARK 465 ILE A 127 REMARK 465 ASN A 128 REMARK 465 ARG A 129 REMARK 465 LEU A 130 REMARK 465 THR A 131 REMARK 465 ALA A 132 REMARK 465 VAL A 133 REMARK 465 LEU A 217 REMARK 465 GLU A 218 REMARK 465 HIS A 219 REMARK 465 HIS A 220 REMARK 465 HIS A 221 REMARK 465 HIS A 222 REMARK 465 HIS A 223 REMARK 465 HIS A 224 REMARK 465 MET B 1 REMARK 465 TYR B 2 REMARK 465 GLY B 22 REMARK 465 GLY B 23 REMARK 465 GLU B 24 REMARK 465 SER B 25 REMARK 465 SER B 26 REMARK 465 MET B 27 REMARK 465 ILE B 28 REMARK 465 GLY B 29 REMARK 465 ALA B 30 REMARK 465 ILE B 31 REMARK 465 GLY B 64 REMARK 465 LEU B 65 REMARK 465 LYS B 66 REMARK 465 MET B 67 REMARK 465 LYS B 68 REMARK 465 GLN B 69 REMARK 465 GLU B 70 REMARK 465 SER B 71 REMARK 465 HIS B 72 REMARK 465 ASN B 73 REMARK 465 GLN B 74 REMARK 465 ASP B 75 REMARK 465 ASN B 125 REMARK 465 THR B 126 REMARK 465 ILE B 127 REMARK 465 ASN B 128 REMARK 465 ARG B 129 REMARK 465 LEU B 130 REMARK 465 THR B 131 REMARK 465 ALA B 132 REMARK 465 VAL B 133 REMARK 465 ALA B 134 REMARK 465 LEU B 217 REMARK 465 GLU B 218 REMARK 465 HIS B 219 REMARK 465 HIS B 220 REMARK 465 HIS B 221 REMARK 465 HIS B 222 REMARK 465 HIS B 223 REMARK 465 HIS B 224 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 93 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 76 122.36 101.54 REMARK 500 ASP A 179 -132.45 -130.68 REMARK 500 ASP B 179 -132.28 -129.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ILE A 199 O REMARK 620 2 HOH A 402 O 85.8 REMARK 620 3 HOH A 440 O 143.2 62.4 REMARK 620 4 HOH A 441 O 108.5 156.2 107.8 REMARK 620 5 HOH A 447 O 80.6 65.9 70.0 133.9 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 301 DBREF 5YJD A 1 214 UNP Q5HK91 Q5HK91_STAEQ 1 214 DBREF 5YJD B 1 214 UNP Q5HK91 Q5HK91_STAEQ 1 214 SEQADV 5YJD ALA A 215 UNP Q5HK91 EXPRESSION TAG SEQADV 5YJD ALA A 216 UNP Q5HK91 EXPRESSION TAG SEQADV 5YJD LEU A 217 UNP Q5HK91 EXPRESSION TAG SEQADV 5YJD GLU A 218 UNP Q5HK91 EXPRESSION TAG SEQADV 5YJD HIS A 219 UNP Q5HK91 EXPRESSION TAG SEQADV 5YJD HIS A 220 UNP Q5HK91 EXPRESSION TAG SEQADV 5YJD HIS A 221 UNP Q5HK91 EXPRESSION TAG SEQADV 5YJD HIS A 222 UNP Q5HK91 EXPRESSION TAG SEQADV 5YJD HIS A 223 UNP Q5HK91 EXPRESSION TAG SEQADV 5YJD HIS A 224 UNP Q5HK91 EXPRESSION TAG SEQADV 5YJD ALA B 215 UNP Q5HK91 EXPRESSION TAG SEQADV 5YJD ALA B 216 UNP Q5HK91 EXPRESSION TAG SEQADV 5YJD LEU B 217 UNP Q5HK91 EXPRESSION TAG SEQADV 5YJD GLU B 218 UNP Q5HK91 EXPRESSION TAG SEQADV 5YJD HIS B 219 UNP Q5HK91 EXPRESSION TAG SEQADV 5YJD HIS B 220 UNP Q5HK91 EXPRESSION TAG SEQADV 5YJD HIS B 221 UNP Q5HK91 EXPRESSION TAG SEQADV 5YJD HIS B 222 UNP Q5HK91 EXPRESSION TAG SEQADV 5YJD HIS B 223 UNP Q5HK91 EXPRESSION TAG SEQADV 5YJD HIS B 224 UNP Q5HK91 EXPRESSION TAG SEQRES 1 A 224 MET TYR SER LYS ILE LYS ILE SER GLY THR ILE GLU VAL SEQRES 2 A 224 VAL THR GLY LEU HIS ILE GLY GLY GLY GLY GLU SER SER SEQRES 3 A 224 MET ILE GLY ALA ILE ASP SER PRO VAL VAL ARG ASP LEU SEQRES 4 A 224 GLN THR LYS LEU PRO ILE ILE PRO GLY SER SER ILE LYS SEQRES 5 A 224 GLY LYS MET ARG ASN LEU LEU ALA LYS HIS PHE GLY LEU SEQRES 6 A 224 LYS MET LYS GLN GLU SER HIS ASN GLN ASP ASP GLU ARG SEQRES 7 A 224 VAL LEU ARG LEU PHE GLY SER SER GLU LYS GLY ASN ILE SEQRES 8 A 224 GLN ARG ALA ARG LEU GLN ILE SER ASP ALA PHE PHE SER SEQRES 9 A 224 GLU LYS THR LYS GLU HIS PHE ALA GLN ASN ASP ILE ALA SEQRES 10 A 224 TYR THR GLU THR LYS PHE GLU ASN THR ILE ASN ARG LEU SEQRES 11 A 224 THR ALA VAL ALA ASN PRO ARG GLN ILE GLU ARG VAL THR SEQRES 12 A 224 ARG GLY SER GLU PHE ASP PHE VAL PHE ILE TYR ASN VAL SEQRES 13 A 224 ASP GLU GLU SER GLN VAL GLU ASP ASP PHE GLU ASN ILE SEQRES 14 A 224 GLU LYS ALA ILE HIS LEU LEU GLU ASN ASP TYR LEU GLY SEQRES 15 A 224 GLY GLY GLY THR ARG GLY ASN GLY ARG ILE GLN PHE LYS SEQRES 16 A 224 ASP THR ASN ILE GLU THR VAL VAL GLY GLU TYR ASP SER SEQRES 17 A 224 THR ASN LEU LYS ILE LYS ALA ALA LEU GLU HIS HIS HIS SEQRES 18 A 224 HIS HIS HIS SEQRES 1 B 224 MET TYR SER LYS ILE LYS ILE SER GLY THR ILE GLU VAL SEQRES 2 B 224 VAL THR GLY LEU HIS ILE GLY GLY GLY GLY GLU SER SER SEQRES 3 B 224 MET ILE GLY ALA ILE ASP SER PRO VAL VAL ARG ASP LEU SEQRES 4 B 224 GLN THR LYS LEU PRO ILE ILE PRO GLY SER SER ILE LYS SEQRES 5 B 224 GLY LYS MET ARG ASN LEU LEU ALA LYS HIS PHE GLY LEU SEQRES 6 B 224 LYS MET LYS GLN GLU SER HIS ASN GLN ASP ASP GLU ARG SEQRES 7 B 224 VAL LEU ARG LEU PHE GLY SER SER GLU LYS GLY ASN ILE SEQRES 8 B 224 GLN ARG ALA ARG LEU GLN ILE SER ASP ALA PHE PHE SER SEQRES 9 B 224 GLU LYS THR LYS GLU HIS PHE ALA GLN ASN ASP ILE ALA SEQRES 10 B 224 TYR THR GLU THR LYS PHE GLU ASN THR ILE ASN ARG LEU SEQRES 11 B 224 THR ALA VAL ALA ASN PRO ARG GLN ILE GLU ARG VAL THR SEQRES 12 B 224 ARG GLY SER GLU PHE ASP PHE VAL PHE ILE TYR ASN VAL SEQRES 13 B 224 ASP GLU GLU SER GLN VAL GLU ASP ASP PHE GLU ASN ILE SEQRES 14 B 224 GLU LYS ALA ILE HIS LEU LEU GLU ASN ASP TYR LEU GLY SEQRES 15 B 224 GLY GLY GLY THR ARG GLY ASN GLY ARG ILE GLN PHE LYS SEQRES 16 B 224 ASP THR ASN ILE GLU THR VAL VAL GLY GLU TYR ASP SER SEQRES 17 B 224 THR ASN LEU LYS ILE LYS ALA ALA LEU GLU HIS HIS HIS SEQRES 18 B 224 HIS HIS HIS HET CA A 301 1 HETNAM CA CALCIUM ION FORMUL 3 CA CA 2+ FORMUL 4 HOH *68(H2 O) HELIX 1 AA1 PRO A 47 PHE A 63 1 17 HELIX 2 AA2 ASP A 76 GLY A 84 1 9 HELIX 3 AA3 SER A 104 ASP A 115 1 12 HELIX 4 AA4 GLU A 158 SER A 160 5 3 HELIX 5 AA5 GLN A 161 ASN A 178 1 18 HELIX 6 AA6 GLY A 184 GLY A 188 5 5 HELIX 7 AA7 PRO B 47 PHE B 63 1 17 HELIX 8 AA8 GLU B 77 GLY B 84 1 8 HELIX 9 AA9 SER B 104 ASP B 115 1 12 HELIX 10 AB1 GLU B 158 SER B 160 5 3 HELIX 11 AB2 GLN B 161 ASN B 178 1 18 HELIX 12 AB3 GLY B 184 GLY B 188 5 5 SHEET 1 AA1 4 ILE A 45 ILE A 46 0 SHEET 2 AA1 4 ALA A 101 PHE A 103 -1 O ALA A 101 N ILE A 46 SHEET 3 AA1 4 GLU A 147 VAL A 156 -1 O ASP A 149 N PHE A 102 SHEET 4 AA1 4 LEU A 96 ILE A 98 -1 N GLN A 97 O ILE A 153 SHEET 1 AA2 5 ILE A 45 ILE A 46 0 SHEET 2 AA2 5 ALA A 101 PHE A 103 -1 O ALA A 101 N ILE A 46 SHEET 3 AA2 5 GLU A 147 VAL A 156 -1 O ASP A 149 N PHE A 102 SHEET 4 AA2 5 SER A 3 VAL A 13 -1 N ILE A 5 O TYR A 154 SHEET 5 AA2 5 ILE A 192 VAL A 203 -1 O LYS A 195 N THR A 10 SHEET 1 AA3 2 THR A 119 PHE A 123 0 SHEET 2 AA3 2 GLN A 138 VAL A 142 -1 O ILE A 139 N LYS A 122 SHEET 1 AA4 4 ILE B 45 ILE B 46 0 SHEET 2 AA4 4 ALA B 101 PHE B 103 -1 O ALA B 101 N ILE B 46 SHEET 3 AA4 4 GLU B 147 ASN B 155 -1 O ASP B 149 N PHE B 102 SHEET 4 AA4 4 LEU B 96 ILE B 98 -1 N GLN B 97 O ILE B 153 SHEET 1 AA5 5 ILE B 45 ILE B 46 0 SHEET 2 AA5 5 ALA B 101 PHE B 103 -1 O ALA B 101 N ILE B 46 SHEET 3 AA5 5 GLU B 147 ASN B 155 -1 O ASP B 149 N PHE B 102 SHEET 4 AA5 5 LYS B 4 VAL B 13 -1 N ILE B 5 O TYR B 154 SHEET 5 AA5 5 ILE B 192 VAL B 203 -1 O LYS B 195 N THR B 10 SHEET 1 AA6 2 THR B 119 PHE B 123 0 SHEET 2 AA6 2 GLN B 138 VAL B 142 -1 O ILE B 139 N LYS B 122 LINK O ILE A 199 CA CA A 301 1555 1555 2.28 LINK CA CA A 301 O HOH A 402 1555 1555 2.70 LINK CA CA A 301 O HOH A 440 1555 1555 3.04 LINK CA CA A 301 O HOH A 441 1555 7455 2.74 LINK CA CA A 301 O HOH A 447 1555 1555 3.04 SITE 1 AC1 5 ILE A 199 HOH A 402 HOH A 440 HOH A 441 SITE 2 AC1 5 HOH A 447 CRYST1 58.623 105.760 155.977 90.00 90.00 90.00 I 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017058 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009455 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006411 0.00000