HEADER TRANSFERASE/INHIBITOR 11-OCT-17 5YJO TITLE CRYSTAL STRUCTURE OF SMYD3 IN COMPLEX WITH COVALENT INHIBITOR 4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE-LYSINE N-METHYLTRANSFERASE SMYD3; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SET AND MYND DOMAIN-CONTAINING PROTEIN 3,ZINC FINGER MYND COMPND 5 DOMAIN-CONTAINING PROTEIN 1; COMPND 6 EC: 2.1.1.43; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SMYD3, ZMYND1, ZNFN3A1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS COVALENT INHIBITOR, METHYLTRANSFERASE, METHYLTRANSFERASE INHIBITOR, KEYWDS 2 TRANSFERASE-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR N.BABURAJENDRAN,J.ANNA E REVDAT 2 10-JUL-19 5YJO 1 JRNL REMARK LINK REVDAT 1 17-OCT-18 5YJO 0 JRNL AUTH C.HUANG,S.S.LIEW,G.R.LIN,A.POULSEN,M.J.Y.ANG,B.C.S.CHIA, JRNL AUTH 2 S.Y.CHEW,Z.P.KWEK,J.L.K.WEE,E.H.ONG,P.RETNA,N.BABURAJENDRAN, JRNL AUTH 3 R.LI,W.YU,X.KOH-STENTA,A.NGO,S.MANESH,J.FULWOOD,Z.KE, JRNL AUTH 4 H.H.CHUNG,S.SEPRAMANIAM,X.H.CHEW,N.DINIE,M.A.LEE,Y.S.CHEW, JRNL AUTH 5 C.B.LOW,V.PENDHARKAR,V.MANOHARAN,S.VUDDAGIRI, JRNL AUTH 6 K.SANGTHONGPITAG,J.JOY,A.MATTER,J.HILL,T.H.KELLER,K.FOO JRNL TITL DISCOVERY OF IRREVERSIBLE INHIBITORS TARGETING HISTONE JRNL TITL 2 METHYLTRANSFERASE, SMYD3. JRNL REF ACS MED.CHEM.LETT. V. 10 978 2019 JRNL REFN ISSN 1948-5875 JRNL PMID 31223458 JRNL DOI 10.1021/ACSMEDCHEMLETT.9B00170 REMARK 2 REMARK 2 RESOLUTION. 2.14 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.14 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.63 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 24817 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.170 REMARK 3 FREE R VALUE TEST SET COUNT : 2027 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 31.6333 - 5.1398 0.99 1751 157 0.1659 0.1674 REMARK 3 2 5.1398 - 4.0823 1.00 1688 149 0.1498 0.1823 REMARK 3 3 4.0823 - 3.5671 1.00 1656 153 0.1650 0.2244 REMARK 3 4 3.5671 - 3.2413 1.00 1643 140 0.1921 0.2247 REMARK 3 5 3.2413 - 3.0092 1.00 1636 150 0.2131 0.2467 REMARK 3 6 3.0092 - 2.8319 1.00 1631 147 0.2231 0.2588 REMARK 3 7 2.8319 - 2.6901 1.00 1626 142 0.2066 0.2849 REMARK 3 8 2.6901 - 2.5731 1.00 1614 142 0.2162 0.2771 REMARK 3 9 2.5731 - 2.4741 0.99 1623 136 0.2129 0.2801 REMARK 3 10 2.4741 - 2.3887 0.99 1597 148 0.2086 0.2510 REMARK 3 11 2.3887 - 2.3141 0.99 1622 138 0.2034 0.2409 REMARK 3 12 2.3141 - 2.2479 0.99 1598 133 0.2020 0.2734 REMARK 3 13 2.2479 - 2.1888 0.99 1568 155 0.2084 0.2597 REMARK 3 14 2.1888 - 2.1354 0.95 1537 137 0.2161 0.2647 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.300 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.85 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.25 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 3467 REMARK 3 ANGLE : 0.525 4681 REMARK 3 CHIRALITY : 0.038 516 REMARK 3 PLANARITY : 0.003 601 REMARK 3 DIHEDRAL : 6.279 2154 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5YJO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-OCT-17. REMARK 100 THE DEPOSITION ID IS D_1300005405. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-FEB-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5419 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 130 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24856 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.135 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : 0.16500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.14 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 0.31000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M MAGNESIUM ACETATE, 17% PEG3350, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.71400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.82400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.09050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.82400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.71400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.09050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 25 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 57 CG CD OE1 OE2 REMARK 470 LYS A 58 CG CD CE NZ REMARK 470 LYS A 88 CG CD CE NZ REMARK 470 LYS A 94 CG CD CE NZ REMARK 470 ARG A 96 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 138 CG CD OE1 OE2 REMARK 470 GLN A 281 CG CD OE1 NE2 REMARK 470 LYS A 292 CG CD CE NZ REMARK 470 LYS A 391 CG CD CE NZ REMARK 470 ASP A 422 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS A 186 CAJ 8W0 A 504 1.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 13 17.67 -144.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 49 SG REMARK 620 2 CYS A 52 SG 107.7 REMARK 620 3 CYS A 71 SG 114.0 106.5 REMARK 620 4 CYS A 75 SG 108.7 116.4 103.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 62 SG REMARK 620 2 CYS A 65 SG 109.2 REMARK 620 3 HIS A 83 NE2 114.3 109.2 REMARK 620 4 CYS A 87 SG 110.4 110.3 103.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 503 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 208 SG REMARK 620 2 CYS A 261 SG 114.4 REMARK 620 3 CYS A 263 SG 109.6 108.4 REMARK 620 4 CYS A 266 SG 101.8 111.9 110.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 8W0 A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAM A 505 DBREF 5YJO A 3 425 UNP Q9H7B4 SMYD3_HUMAN 3 425 SEQADV 5YJO ASN A 13 UNP Q9H7B4 LYS 13 ENGINEERED MUTATION SEQADV 5YJO ARG A 140 UNP Q9H7B4 LYS 140 ENGINEERED MUTATION SEQRES 1 A 423 PRO LEU LYS VAL GLU LYS PHE ALA THR ALA ASN ARG GLY SEQRES 2 A 423 ASN GLY LEU ARG ALA VAL THR PRO LEU ARG PRO GLY GLU SEQRES 3 A 423 LEU LEU PHE ARG SER ASP PRO LEU ALA TYR THR VAL CYS SEQRES 4 A 423 LYS GLY SER ARG GLY VAL VAL CYS ASP ARG CYS LEU LEU SEQRES 5 A 423 GLY LYS GLU LYS LEU MET ARG CYS SER GLN CYS ARG VAL SEQRES 6 A 423 ALA LYS TYR CYS SER ALA LYS CYS GLN LYS LYS ALA TRP SEQRES 7 A 423 PRO ASP HIS LYS ARG GLU CYS LYS CYS LEU LYS SER CYS SEQRES 8 A 423 LYS PRO ARG TYR PRO PRO ASP SER VAL ARG LEU LEU GLY SEQRES 9 A 423 ARG VAL VAL PHE LYS LEU MET ASP GLY ALA PRO SER GLU SEQRES 10 A 423 SER GLU LYS LEU TYR SER PHE TYR ASP LEU GLU SER ASN SEQRES 11 A 423 ILE ASN LYS LEU THR GLU ASP ARG LYS GLU GLY LEU ARG SEQRES 12 A 423 GLN LEU VAL MET THR PHE GLN HIS PHE MET ARG GLU GLU SEQRES 13 A 423 ILE GLN ASP ALA SER GLN LEU PRO PRO ALA PHE ASP LEU SEQRES 14 A 423 PHE GLU ALA PHE ALA LYS VAL ILE CYS ASN SER PHE THR SEQRES 15 A 423 ILE CYS ASN ALA GLU MET GLN GLU VAL GLY VAL GLY LEU SEQRES 16 A 423 TYR PRO SER ILE SER LEU LEU ASN HIS SER CYS ASP PRO SEQRES 17 A 423 ASN CYS SER ILE VAL PHE ASN GLY PRO HIS LEU LEU LEU SEQRES 18 A 423 ARG ALA VAL ARG ASP ILE GLU VAL GLY GLU GLU LEU THR SEQRES 19 A 423 ILE CYS TYR LEU ASP MET LEU MET THR SER GLU GLU ARG SEQRES 20 A 423 ARG LYS GLN LEU ARG ASP GLN TYR CYS PHE GLU CYS ASP SEQRES 21 A 423 CYS PHE ARG CYS GLN THR GLN ASP LYS ASP ALA ASP MET SEQRES 22 A 423 LEU THR GLY ASP GLU GLN VAL TRP LYS GLU VAL GLN GLU SEQRES 23 A 423 SER LEU LYS LYS ILE GLU GLU LEU LYS ALA HIS TRP LYS SEQRES 24 A 423 TRP GLU GLN VAL LEU ALA MET CYS GLN ALA ILE ILE SER SEQRES 25 A 423 SER ASN SER GLU ARG LEU PRO ASP ILE ASN ILE TYR GLN SEQRES 26 A 423 LEU LYS VAL LEU ASP CYS ALA MET ASP ALA CYS ILE ASN SEQRES 27 A 423 LEU GLY LEU LEU GLU GLU ALA LEU PHE TYR GLY THR ARG SEQRES 28 A 423 THR MET GLU PRO TYR ARG ILE PHE PHE PRO GLY SER HIS SEQRES 29 A 423 PRO VAL ARG GLY VAL GLN VAL MET LYS VAL GLY LYS LEU SEQRES 30 A 423 GLN LEU HIS GLN GLY MET PHE PRO GLN ALA MET LYS ASN SEQRES 31 A 423 LEU ARG LEU ALA PHE ASP ILE MET ARG VAL THR HIS GLY SEQRES 32 A 423 ARG GLU HIS SER LEU ILE GLU ASP LEU ILE LEU LEU LEU SEQRES 33 A 423 GLU GLU CYS ASP ALA ASN ILE HET ZN A 501 1 HET ZN A 502 1 HET ZN A 503 1 HET 8W0 A 504 31 HET SAM A 505 27 HETNAM ZN ZINC ION HETNAM 8W0 PROPYL (3~{S})-4-[[(6~{R})-6-(AMINOMETHYL)-5,6,7,8- HETNAM 2 8W0 TETRAHYDROACRIDIN-3-YL]CARBONYL]-3-METHYL-PIPERAZINE- HETNAM 3 8W0 1-CARBOXYLATE HETNAM SAM S-ADENOSYLMETHIONINE FORMUL 2 ZN 3(ZN 2+) FORMUL 5 8W0 C24 H32 N4 O3 FORMUL 6 SAM C15 H22 N6 O5 S FORMUL 7 HOH *158(H2 O) HELIX 1 AA1 LYS A 42 ARG A 45 5 4 HELIX 2 AA2 SER A 72 ALA A 79 1 8 HELIX 3 AA3 ALA A 79 CYS A 93 1 15 HELIX 4 AA4 PRO A 99 GLY A 115 1 17 HELIX 5 AA5 SER A 118 LYS A 122 5 5 HELIX 6 AA6 ASN A 132 LEU A 136 5 5 HELIX 7 AA7 THR A 137 MET A 155 1 19 HELIX 8 AA8 ASP A 161 LEU A 165 5 5 HELIX 9 AA9 ASP A 170 CYS A 180 1 11 HELIX 10 AB1 SER A 200 LEU A 204 5 5 HELIX 11 AB2 THR A 245 GLN A 256 1 12 HELIX 12 AB3 CYS A 263 GLN A 269 1 7 HELIX 13 AB4 LYS A 271 LEU A 276 1 6 HELIX 14 AB5 ASP A 279 HIS A 299 1 21 HELIX 15 AB6 LYS A 301 SER A 314 1 14 HELIX 16 AB7 ASN A 324 GLY A 342 1 19 HELIX 17 AB8 LEU A 343 THR A 354 1 12 HELIX 18 AB9 THR A 354 PHE A 362 1 9 HELIX 19 AC1 HIS A 366 GLY A 384 1 19 HELIX 20 AC2 MET A 385 HIS A 404 1 20 HELIX 21 AC3 HIS A 408 ILE A 425 1 18 SHEET 1 AA1 4 VAL A 6 ALA A 10 0 SHEET 2 AA1 4 ASN A 16 ALA A 20 -1 O GLY A 17 N PHE A 9 SHEET 3 AA1 4 GLU A 234 ILE A 237 -1 O LEU A 235 N LEU A 18 SHEET 4 AA1 4 ASN A 205 HIS A 206 1 N ASN A 205 O ILE A 237 SHEET 1 AA2 3 LEU A 29 SER A 33 0 SHEET 2 AA2 3 HIS A 220 ALA A 225 -1 O LEU A 223 N LEU A 30 SHEET 3 AA2 3 CYS A 212 ASN A 217 -1 N SER A 213 O ARG A 224 SHEET 1 AA3 3 ALA A 37 VAL A 40 0 SHEET 2 AA3 3 GLU A 192 LEU A 197 -1 O LEU A 197 N ALA A 37 SHEET 3 AA3 3 SER A 182 CYS A 186 -1 N ILE A 185 O VAL A 193 SHEET 1 AA4 2 MET A 60 ARG A 61 0 SHEET 2 AA4 2 LYS A 69 TYR A 70 -1 O TYR A 70 N MET A 60 LINK SG CYS A 49 ZN ZN A 502 1555 1555 2.36 LINK SG CYS A 52 ZN ZN A 502 1555 1555 2.33 LINK SG CYS A 62 ZN ZN A 501 1555 1555 2.35 LINK SG CYS A 65 ZN ZN A 501 1555 1555 2.31 LINK SG CYS A 71 ZN ZN A 502 1555 1555 2.35 LINK SG CYS A 75 ZN ZN A 502 1555 1555 2.29 LINK NE2 HIS A 83 ZN ZN A 501 1555 1555 2.05 LINK SG CYS A 87 ZN ZN A 501 1555 1555 2.27 LINK SG CYS A 208 ZN ZN A 503 1555 1555 2.31 LINK SG CYS A 261 ZN ZN A 503 1555 1555 2.27 LINK SG CYS A 263 ZN ZN A 503 1555 1555 2.32 LINK SG CYS A 266 ZN ZN A 503 1555 1555 2.33 CISPEP 1 LYS A 94 PRO A 95 0 0.22 SITE 1 AC1 4 CYS A 62 CYS A 65 HIS A 83 CYS A 87 SITE 1 AC2 4 CYS A 49 CYS A 52 CYS A 71 CYS A 75 SITE 1 AC3 4 CYS A 208 CYS A 261 CYS A 263 CYS A 266 SITE 1 AC4 17 ASN A 181 SER A 182 PHE A 183 THR A 184 SITE 2 AC4 17 CYS A 186 MET A 190 ILE A 214 PHE A 216 SITE 3 AC4 17 CYS A 238 TYR A 239 ASP A 241 TYR A 257 SITE 4 AC4 17 SAM A 505 HOH A 603 HOH A 672 HOH A 694 SITE 5 AC4 17 HOH A 721 SITE 1 AC5 23 ARG A 14 ASN A 16 TYR A 124 GLU A 130 SITE 2 AC5 23 ASN A 132 CYS A 180 ASN A 181 SER A 202 SITE 3 AC5 23 LEU A 203 LEU A 204 ASN A 205 HIS A 206 SITE 4 AC5 23 TYR A 239 TYR A 257 PHE A 259 8W0 A 504 SITE 5 AC5 23 HOH A 604 HOH A 638 HOH A 653 HOH A 698 SITE 6 AC5 23 HOH A 711 HOH A 715 HOH A 723 CRYST1 61.428 66.181 107.648 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016279 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015110 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009290 0.00000