HEADER SIGNALING PROTEIN 12-OCT-17 5YK5 TITLE STRUCTURE OF THE HUMAN LAMTOR4-LAMTOR5 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: RAGULATOR COMPLEX PROTEIN LAMTOR4; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: LATE ENDOSOMAL/LYSOSOMAL ADAPTOR AND MAPK AND MTOR ACTIVATOR COMPND 5 4; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: RAGULATOR COMPLEX PROTEIN LAMTOR5; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: HEPATITIS B VIRUS X-INTERACTING PROTEIN,HBX-INTERACTING COMPND 11 PROTEIN,LATE ENDOSOMAL/LYSOSOMAL ADAPTOR AND MAPK AND MTOR ACTIVATOR COMPND 12 5; COMPND 13 ENGINEERED: YES; COMPND 14 MOL_ID: 3; COMPND 15 MOLECULE: RAGULATOR COMPLEX PROTEIN LAMTOR4; COMPND 16 CHAIN: C; COMPND 17 SYNONYM: LATE ENDOSOMAL/LYSOSOMAL ADAPTOR AND MAPK AND MTOR ACTIVATOR COMPND 18 4; COMPND 19 ENGINEERED: YES; COMPND 20 MUTATION: YES; COMPND 21 MOL_ID: 4; COMPND 22 MOLECULE: RAGULATOR COMPLEX PROTEIN LAMTOR5; COMPND 23 CHAIN: D; COMPND 24 SYNONYM: HEPATITIS B VIRUS X-INTERACTING PROTEIN,HBX-INTERACTING COMPND 25 PROTEIN,LATE ENDOSOMAL/LYSOSOMAL ADAPTOR AND MAPK AND MTOR ACTIVATOR COMPND 26 5; COMPND 27 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: LAMTOR4, C7ORF59; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: LAMTOR5, HBXIP, XIP; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 17 ORGANISM_COMMON: HUMAN; SOURCE 18 ORGANISM_TAXID: 9606; SOURCE 19 GENE: LAMTOR4, C7ORF59; SOURCE 20 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 21 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 22 MOL_ID: 4; SOURCE 23 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 24 ORGANISM_COMMON: HUMAN; SOURCE 25 ORGANISM_TAXID: 9606; SOURCE 26 GENE: LAMTOR5, HBXIP, XIP; SOURCE 27 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 28 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CELLULAR SIGNAL TRANSDUCTION PATHWAY, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR G.WU,Z.MU REVDAT 3 27-MAR-24 5YK5 1 REMARK REVDAT 2 23-JAN-19 5YK5 1 JRNL REVDAT 1 12-DEC-18 5YK5 0 JRNL AUTH Z.MU,L.WANG,W.DENG,J.WANG,G.WU JRNL TITL STRUCTURAL INSIGHT INTO THE RAGULATOR COMPLEX WHICH ANCHORS JRNL TITL 2 MTORC1 TO THE LYSOSOMAL MEMBRANE JRNL REF CELL DISCOV V. 3 17049 2017 JRNL REFN ESSN 2056-5968 JRNL PMID 29285400 JRNL DOI 10.1038/CELLDISC.2017.49 REMARK 2 REMARK 2 RESOLUTION. 2.03 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.03 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 93.1 REMARK 3 NUMBER OF REFLECTIONS : 19847 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.237 REMARK 3 R VALUE (WORKING SET) : 0.233 REMARK 3 FREE R VALUE : 0.294 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1068 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.03 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.08 REMARK 3 REFLECTION IN BIN (WORKING SET) : 310 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 19.70 REMARK 3 BIN R VALUE (WORKING SET) : 0.3100 REMARK 3 BIN FREE R VALUE SET COUNT : 17 REMARK 3 BIN FREE R VALUE : 0.4630 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2536 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 68 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.59 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.07000 REMARK 3 B22 (A**2) : 0.07000 REMARK 3 B33 (A**2) : -0.10000 REMARK 3 B12 (A**2) : 0.03000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.226 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.179 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.694 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.923 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.888 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2571 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3486 ; 1.620 ; 1.965 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 343 ; 9.362 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 103 ;37.073 ;25.340 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 444 ;19.276 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;19.160 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 431 ; 0.115 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1881 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 2571 ; 5.358 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 25 ;37.520 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 2585 ; 8.121 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 2 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 9 92 C 9 92 80 0.11 0.05 REMARK 3 2 B 4 88 D 4 88 110 0.10 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 5YK5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-OCT-17. REMARK 100 THE DEPOSITION ID IS D_1300005418. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-SEP-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97852 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22500 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.030 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.30 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS-HCL, PH 8.0, 3.5M SODIUM REMARK 280 FORMATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 287K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 35.29267 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 17.64633 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2060 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2040 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 10 CG CD OE1 OE2 REMARK 470 ASN A 35 CG OD1 ND2 REMARK 470 ARG A 92 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 27 CG CD OE1 NE2 REMARK 470 ARG C 57 CG CD NE CZ NH1 NH2 REMARK 470 PRO C 62 CG CD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 89 O HOH A 101 2.03 REMARK 500 O ASP D 25 O GLN D 27 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU B 29 CA - CB - CG ANGL. DEV. = 16.0 DEGREES REMARK 500 PRO C 62 N - CA - CB ANGL. DEV. = 11.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 35 62.74 33.37 REMARK 500 LEU A 55 -85.05 -79.78 REMARK 500 MET A 59 34.30 -98.70 REMARK 500 PRO A 62 33.26 -77.29 REMARK 500 SER A 80 117.56 -171.24 REMARK 500 ALA B 3 -172.64 55.18 REMARK 500 LEU B 5 -2.81 -149.98 REMARK 500 ASP B 25 -160.88 -125.64 REMARK 500 ASN B 30 95.80 -69.95 REMARK 500 PRO B 59 28.84 -59.16 REMARK 500 HIS B 79 99.73 -168.67 REMARK 500 ASN C 35 65.57 -105.58 REMARK 500 HIS C 56 -66.43 -152.99 REMARK 500 ARG C 57 -63.59 -121.68 REMARK 500 MET C 59 21.46 -78.90 REMARK 500 ASN C 60 91.56 -49.26 REMARK 500 PRO C 62 -41.18 91.42 REMARK 500 ASP D 25 -153.22 -134.68 REMARK 500 ASP D 58 127.68 -33.65 REMARK 500 PRO D 59 35.21 -74.10 REMARK 500 HIS D 79 -52.39 -121.91 REMARK 500 ASP D 80 66.56 -153.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 80 GLY A 81 -35.59 REMARK 500 ASP B 58 PRO B 59 149.11 REMARK 500 SER C 22 GLU C 23 -140.87 REMARK 500 VAL C 61 PRO C 62 32.48 REMARK 500 PRO C 62 PHE C 63 144.79 REMARK 500 SER C 80 GLY C 81 -51.70 REMARK 500 ASN C 91 ALA C 92 148.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 110 DISTANCE = 5.85 ANGSTROMS DBREF 5YK5 A 9 92 UNP Q0VGL1 LTOR4_HUMAN 9 92 DBREF 5YK5 B 3 90 UNP O43504 LTOR5_HUMAN 3 90 DBREF 5YK5 C 9 91 UNP Q0VGL1 LTOR4_HUMAN 9 91 DBREF 5YK5 D 4 89 UNP O43504 LTOR5_HUMAN 4 89 SEQADV 5YK5 ALA B 2 UNP O43504 EXPRESSION TAG SEQADV 5YK5 ALA C 10 UNP Q0VGL1 GLU 10 ENGINEERED MUTATION SEQADV 5YK5 ALA C 92 UNP Q0VGL1 EXPRESSION TAG SEQRES 1 A 84 LEU GLU ARG ILE PRO ASP GLN LEU GLY TYR LEU VAL LEU SEQRES 2 A 84 SER GLU GLY ALA VAL LEU ALA SER SER GLY ASP LEU GLU SEQRES 3 A 84 ASN ASP GLU GLN ALA ALA SER ALA ILE SER GLU LEU VAL SEQRES 4 A 84 SER THR ALA CYS GLY PHE ARG LEU HIS ARG GLY MET ASN SEQRES 5 A 84 VAL PRO PHE LYS ARG LEU SER VAL VAL PHE GLY GLU HIS SEQRES 6 A 84 THR LEU LEU VAL THR VAL SER GLY GLN ARG VAL PHE VAL SEQRES 7 A 84 VAL LYS ARG GLN ASN ARG SEQRES 1 B 89 ALA ALA THR LEU GLU GLN HIS LEU GLU ASP THR MET LYS SEQRES 2 B 89 ASN PRO SER ILE VAL GLY VAL LEU CYS THR ASP SER GLN SEQRES 3 B 89 GLY LEU ASN LEU GLY CYS ARG GLY THR LEU SER ASP GLU SEQRES 4 B 89 HIS ALA GLY VAL ILE SER VAL LEU ALA GLN GLN ALA ALA SEQRES 5 B 89 LYS LEU THR SER ASP PRO THR ASP ILE PRO VAL VAL CYS SEQRES 6 B 89 LEU GLU SER ASP ASN GLY ASN ILE MET ILE GLN LYS HIS SEQRES 7 B 89 ASP GLY ILE THR VAL ALA VAL HIS LYS MET ALA SEQRES 1 C 84 LEU ALA ARG ILE PRO ASP GLN LEU GLY TYR LEU VAL LEU SEQRES 2 C 84 SER GLU GLY ALA VAL LEU ALA SER SER GLY ASP LEU GLU SEQRES 3 C 84 ASN ASP GLU GLN ALA ALA SER ALA ILE SER GLU LEU VAL SEQRES 4 C 84 SER THR ALA CYS GLY PHE ARG LEU HIS ARG GLY MET ASN SEQRES 5 C 84 VAL PRO PHE LYS ARG LEU SER VAL VAL PHE GLY GLU HIS SEQRES 6 C 84 THR LEU LEU VAL THR VAL SER GLY GLN ARG VAL PHE VAL SEQRES 7 C 84 VAL LYS ARG GLN ASN ALA SEQRES 1 D 86 THR LEU GLU GLN HIS LEU GLU ASP THR MET LYS ASN PRO SEQRES 2 D 86 SER ILE VAL GLY VAL LEU CYS THR ASP SER GLN GLY LEU SEQRES 3 D 86 ASN LEU GLY CYS ARG GLY THR LEU SER ASP GLU HIS ALA SEQRES 4 D 86 GLY VAL ILE SER VAL LEU ALA GLN GLN ALA ALA LYS LEU SEQRES 5 D 86 THR SER ASP PRO THR ASP ILE PRO VAL VAL CYS LEU GLU SEQRES 6 D 86 SER ASP ASN GLY ASN ILE MET ILE GLN LYS HIS ASP GLY SEQRES 7 D 86 ILE THR VAL ALA VAL HIS LYS MET FORMUL 5 HOH *68(H2 O) HELIX 1 AA1 ASP A 36 PHE A 53 1 18 HELIX 2 AA2 LEU B 5 LYS B 14 1 10 HELIX 3 AA3 SER B 38 LYS B 54 1 17 HELIX 4 AA4 ASP C 36 PHE C 53 1 18 HELIX 5 AA5 LEU D 5 LYS D 14 1 10 HELIX 6 AA6 SER D 38 GLU D 40 5 3 HELIX 7 AA7 HIS D 41 LYS D 54 1 14 SHEET 1 AA110 ALA A 25 GLY A 31 0 SHEET 2 AA110 GLN A 15 SER A 22 -1 N VAL A 20 O LEU A 27 SHEET 3 AA110 ARG A 83 GLN A 90 -1 O LYS A 88 N LEU A 16 SHEET 4 AA110 HIS A 73 VAL A 79 -1 N THR A 78 O PHE A 85 SHEET 5 AA110 ARG A 65 VAL A 69 -1 N LEU A 66 O VAL A 77 SHEET 6 AA110 VAL B 64 GLU B 68 -1 O VAL B 64 N VAL A 69 SHEET 7 AA110 GLY B 72 LYS B 78 -1 O ILE B 76 N VAL B 65 SHEET 8 AA110 THR B 83 MET B 89 -1 O VAL B 84 N GLN B 77 SHEET 9 AA110 ILE B 18 THR B 24 -1 N THR B 24 O THR B 83 SHEET 10 AA110 CYS B 33 GLY B 35 -1 O ARG B 34 N VAL B 21 SHEET 1 AA210 ALA C 25 GLY C 31 0 SHEET 2 AA210 GLN C 15 SER C 22 -1 N VAL C 20 O LEU C 27 SHEET 3 AA210 ARG C 83 GLN C 90 -1 O LYS C 88 N LEU C 16 SHEET 4 AA210 HIS C 73 SER C 80 -1 N THR C 78 O PHE C 85 SHEET 5 AA210 ARG C 65 VAL C 69 -1 N LEU C 66 O VAL C 77 SHEET 6 AA210 VAL D 64 GLU D 68 -1 O CYS D 66 N SER C 67 SHEET 7 AA210 ASN D 73 LYS D 78 -1 O ILE D 74 N LEU D 67 SHEET 8 AA210 THR D 83 LYS D 88 -1 O LYS D 88 N ASN D 73 SHEET 9 AA210 ILE D 18 THR D 24 -1 N THR D 24 O THR D 83 SHEET 10 AA210 CYS D 33 GLY D 35 -1 O ARG D 34 N VAL D 21 CISPEP 1 GLU A 23 GLY A 24 0 -1.51 CISPEP 2 HIS B 79 ASP B 80 0 -12.38 CISPEP 3 GLU C 23 GLY C 24 0 2.19 CISPEP 4 GLU C 34 ASN C 35 0 -24.50 CISPEP 5 GLN D 27 GLY D 28 0 23.16 CRYST1 76.672 76.672 52.939 90.00 90.00 120.00 P 32 3 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013043 0.007530 0.000000 0.00000 SCALE2 0.000000 0.015060 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018890 0.00000