HEADER LIPID TRANSPORT 12-OCT-17 5YK7 TITLE CRYSTAL STRUCTURE OF MDM12-MMM1 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAINTENANCE OF MITOCHONDRIAL MORPHOLOGY PROTEIN 1; COMPND 3 CHAIN: A, C; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: MITOCHONDRIAL DISTRIBUTION AND MORPHOLOGY PROTEIN 12; COMPND 7 CHAIN: B, D; COMPND 8 SYNONYM: MITOCHONDRIAL INHERITANCE COMPONENT MDM12; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ZYGOSACCHAROMYCES ROUXII (STRAIN ATCC 2623 / SOURCE 3 CBS 732 / NBRC 1130 / NCYC 568 / NRRL Y-229); SOURCE 4 ORGANISM_COMMON: CANDIDA MOGII; SOURCE 5 ORGANISM_TAXID: 559307; SOURCE 6 STRAIN: ATCC 2623 / CBS 732 / NBRC 1130 / NCYC 568 / NRRL Y-229; SOURCE 7 GENE: MMM1, ZYRO0B10274G; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 12 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 13 ORGANISM_TAXID: 559292; SOURCE 14 STRAIN: ATCC 204508 / S288C; SOURCE 15 GENE: MDM12, YOL009C; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 17 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS MMM1, MDM12, ERMES, PHOSPHOLIPID, MEMBRANE CONTACT SITE, LIPID KEYWDS 2 TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR H.JEONG,J.PARK,C.LEE REVDAT 2 22-NOV-23 5YK7 1 REMARK REVDAT 1 10-JAN-18 5YK7 0 JRNL AUTH H.JEONG,J.PARK,Y.JUN,C.LEE JRNL TITL CRYSTAL STRUCTURES OF MMM1 AND MDM12-MMM1 REVEAL MECHANISTIC JRNL TITL 2 INSIGHT INTO PHOSPHOLIPID TRAFFICKING AT ER-MITOCHONDRIA JRNL TITL 3 CONTACT SITES. JRNL REF PROC. NATL. ACAD. SCI. V. 114 E9502 2017 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 29078410 JRNL DOI 10.1073/PNAS.1715592114 REMARK 2 REMARK 2 RESOLUTION. 3.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.14 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 18456 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.239 REMARK 3 R VALUE (WORKING SET) : 0.238 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.960 REMARK 3 FREE R VALUE TEST SET COUNT : 916 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.1436 - 7.2545 0.99 2484 134 0.1889 0.1918 REMARK 3 2 7.2545 - 5.7640 1.00 2546 133 0.3156 0.3277 REMARK 3 3 5.7640 - 5.0371 1.00 2506 134 0.2573 0.3182 REMARK 3 4 5.0371 - 4.5774 1.00 2508 133 0.2500 0.3007 REMARK 3 5 4.5774 - 4.2497 1.00 2533 132 0.2570 0.3056 REMARK 3 6 4.2497 - 3.9994 1.00 2472 122 0.2778 0.3432 REMARK 3 7 3.9994 - 3.7993 0.99 2491 128 0.3155 0.3690 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.550 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.230 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 6949 REMARK 3 ANGLE : 0.772 9411 REMARK 3 CHIRALITY : 0.046 1061 REMARK 3 PLANARITY : 0.005 1195 REMARK 3 DIHEDRAL : 12.702 4192 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 194 THROUGH 439) REMARK 3 ORIGIN FOR THE GROUP (A): 39.0127 5.3894 44.9536 REMARK 3 T TENSOR REMARK 3 T11: 2.0563 T22: 1.6091 REMARK 3 T33: 1.6621 T12: -0.1147 REMARK 3 T13: -0.1637 T23: 1.0015 REMARK 3 L TENSOR REMARK 3 L11: 9.4962 L22: 5.4567 REMARK 3 L33: 0.9123 L12: -7.7352 REMARK 3 L13: 2.3557 L23: -1.8569 REMARK 3 S TENSOR REMARK 3 S11: 0.2165 S12: 0.0165 S13: -1.1709 REMARK 3 S21: 0.7839 S22: -0.9497 S23: 0.4331 REMARK 3 S31: -0.6880 S32: 0.2839 S33: 0.2218 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'B' AND RESID 1 THROUGH 238) REMARK 3 ORIGIN FOR THE GROUP (A): 76.7817 -26.6669 66.8054 REMARK 3 T TENSOR REMARK 3 T11: 1.3950 T22: 2.0603 REMARK 3 T33: 1.5091 T12: 0.2021 REMARK 3 T13: 0.1757 T23: 0.6458 REMARK 3 L TENSOR REMARK 3 L11: 2.4102 L22: 9.3739 REMARK 3 L33: 6.5259 L12: 0.0626 REMARK 3 L13: 4.1534 L23: -5.6744 REMARK 3 S TENSOR REMARK 3 S11: 0.6402 S12: -0.8358 S13: 0.9390 REMARK 3 S21: 0.7540 S22: 0.3358 S23: 0.7701 REMARK 3 S31: 0.0051 S32: -0.4180 S33: -0.9411 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN 'C' AND RESID 194 THROUGH 439) REMARK 3 ORIGIN FOR THE GROUP (A): 24.1471 31.1527 30.3434 REMARK 3 T TENSOR REMARK 3 T11: 1.4662 T22: 1.4798 REMARK 3 T33: 1.8711 T12: 0.1392 REMARK 3 T13: -0.7148 T23: 0.2849 REMARK 3 L TENSOR REMARK 3 L11: 6.1138 L22: 7.9316 REMARK 3 L33: 1.1710 L12: -1.7643 REMARK 3 L13: 1.4281 L23: -2.3392 REMARK 3 S TENSOR REMARK 3 S11: 0.0548 S12: 0.6415 S13: -0.3740 REMARK 3 S21: 0.3803 S22: -0.2557 S23: 1.0915 REMARK 3 S31: 0.2312 S32: 0.7917 S33: -0.0849 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN 'D' AND RESID 1 THROUGH 238) REMARK 3 ORIGIN FOR THE GROUP (A): 15.3189 80.0142 8.4045 REMARK 3 T TENSOR REMARK 3 T11: 2.4316 T22: 1.6012 REMARK 3 T33: 0.5822 T12: 0.2536 REMARK 3 T13: -0.4116 T23: 0.2310 REMARK 3 L TENSOR REMARK 3 L11: 4.6623 L22: 8.2346 REMARK 3 L33: 3.4628 L12: 4.2775 REMARK 3 L13: 1.6124 L23: -2.6020 REMARK 3 S TENSOR REMARK 3 S11: -0.0359 S12: 0.1404 S13: 0.0601 REMARK 3 S21: -0.9020 S22: 0.5132 S23: -0.4415 REMARK 3 S31: 0.8446 S32: 0.2800 S33: 0.0561 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5YK7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-OCT-17. REMARK 100 THE DEPOSITION ID IS D_1300005396. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JUL-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 5C (4A) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97950 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18459 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 5.800 REMARK 200 R MERGE (I) : 0.04600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 27.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.87 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 5GYD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 74.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, HEPES, AMMONIUM SULFATE, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 291.25333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 145.62667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 218.44000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 72.81333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 364.06667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 190 REMARK 465 ASP A 191 REMARK 465 ASP A 192 REMARK 465 GLU A 193 REMARK 465 LYS A 348 REMARK 465 ALA A 349 REMARK 465 GLU A 350 REMARK 465 GLU A 351 REMARK 465 PHE A 352 REMARK 465 VAL A 353 REMARK 465 PRO A 354 REMARK 465 THR A 355 REMARK 465 SER A 356 REMARK 465 PRO A 357 REMARK 465 GLU A 358 REMARK 465 SER A 359 REMARK 465 VAL A 360 REMARK 465 ASP A 361 REMARK 465 GLU A 362 REMARK 465 ASP A 363 REMARK 465 ASP A 364 REMARK 465 ASN A 365 REMARK 465 ASP A 366 REMARK 465 GLY A 367 REMARK 465 TYR A 368 REMARK 465 ARG A 391 REMARK 465 SER A 392 REMARK 465 LYS A 393 REMARK 465 LEU A 394 REMARK 465 LYS A 440 REMARK 465 ALA A 441 REMARK 465 ASP A 442 REMARK 465 VAL A 443 REMARK 465 ASP A 444 REMARK 465 GLY B 110 REMARK 465 GLY B 111 REMARK 465 SER B 112 REMARK 465 GLY B 113 REMARK 465 GLY B 114 REMARK 465 PHE B 239 REMARK 465 ASN B 240 REMARK 465 ASP B 241 REMARK 465 GLY B 242 REMARK 465 ASP B 243 REMARK 465 GLU B 244 REMARK 465 ASN C 190 REMARK 465 ASP C 191 REMARK 465 ASP C 192 REMARK 465 GLU C 193 REMARK 465 THR C 347 REMARK 465 LYS C 348 REMARK 465 ALA C 349 REMARK 465 GLU C 350 REMARK 465 GLU C 351 REMARK 465 PHE C 352 REMARK 465 VAL C 353 REMARK 465 PRO C 354 REMARK 465 THR C 355 REMARK 465 SER C 356 REMARK 465 PRO C 357 REMARK 465 GLU C 358 REMARK 465 SER C 359 REMARK 465 VAL C 360 REMARK 465 ASP C 361 REMARK 465 GLU C 362 REMARK 465 ASP C 363 REMARK 465 ASP C 364 REMARK 465 ASN C 365 REMARK 465 ASP C 366 REMARK 465 GLY C 367 REMARK 465 TYR C 368 REMARK 465 ARG C 391 REMARK 465 SER C 392 REMARK 465 LYS C 393 REMARK 465 LEU C 394 REMARK 465 LYS C 440 REMARK 465 ALA C 441 REMARK 465 ASP C 442 REMARK 465 VAL C 443 REMARK 465 ASP C 444 REMARK 465 GLY D 110 REMARK 465 GLY D 111 REMARK 465 SER D 112 REMARK 465 GLY D 113 REMARK 465 GLY D 114 REMARK 465 SER D 115 REMARK 465 PHE D 239 REMARK 465 ASN D 240 REMARK 465 ASP D 241 REMARK 465 GLY D 242 REMARK 465 ASP D 243 REMARK 465 GLU D 244 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER C 287 OG SER C 290 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 263 -113.54 -100.30 REMARK 500 ASN A 281 88.14 50.67 REMARK 500 ASN A 289 6.28 59.03 REMARK 500 ASP A 305 -173.33 -171.09 REMARK 500 LEU A 323 125.03 69.91 REMARK 500 ASN A 396 77.27 -60.10 REMARK 500 PRO A 419 51.86 -92.91 REMARK 500 ASP B 4 92.62 -171.07 REMARK 500 TRP B 7 40.12 -70.29 REMARK 500 ASP B 13 84.65 -68.79 REMARK 500 LYS B 128 14.93 -142.02 REMARK 500 SER B 172 70.98 44.91 REMARK 500 ASP B 182 -87.79 -81.23 REMARK 500 SER B 185 8.57 -66.95 REMARK 500 ILE B 196 -162.92 -114.49 REMARK 500 ASP C 263 -113.79 -104.94 REMARK 500 ASN C 281 82.50 53.31 REMARK 500 ASN C 289 -9.19 61.60 REMARK 500 ARG C 293 -60.78 -91.45 REMARK 500 ASP C 305 -161.12 -166.21 REMARK 500 LEU C 323 112.63 66.88 REMARK 500 SER C 326 116.70 -39.07 REMARK 500 PRO C 419 52.20 -95.86 REMARK 500 TRP D 7 31.20 -75.20 REMARK 500 ASP D 118 -165.26 -108.60 REMARK 500 ASN D 142 30.43 -140.28 REMARK 500 SER D 172 72.48 48.90 REMARK 500 SER D 185 -7.62 -57.86 REMARK 500 ILE D 196 -168.60 -118.78 REMARK 500 LEU D 237 97.05 58.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 C 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 C 502 DBREF 5YK7 A 190 444 UNP C5DRQ1 MMM1_ZYGRC 190 444 DBREF 5YK7 B 1 73 UNP Q92328 MDM12_YEAST 1 73 DBREF 5YK7 B 115 182 UNP Q92328 MDM12_YEAST 115 182 DBREF 5YK7 B 185 244 UNP Q92328 MDM12_YEAST 212 271 DBREF 5YK7 C 190 444 UNP C5DRQ1 MMM1_ZYGRC 190 444 DBREF 5YK7 D 1 73 UNP Q92328 MDM12_YEAST 1 73 DBREF 5YK7 D 115 182 UNP Q92328 MDM12_YEAST 115 182 DBREF 5YK7 D 185 244 UNP Q92328 MDM12_YEAST 212 271 SEQADV 5YK7 GLY B 110 UNP Q92328 LINKER SEQADV 5YK7 GLY B 111 UNP Q92328 LINKER SEQADV 5YK7 SER B 112 UNP Q92328 LINKER SEQADV 5YK7 GLY B 113 UNP Q92328 LINKER SEQADV 5YK7 GLY B 114 UNP Q92328 LINKER SEQADV 5YK7 GLY B 183 UNP Q92328 LINKER SEQADV 5YK7 GLY B 184 UNP Q92328 LINKER SEQADV 5YK7 GLY D 110 UNP Q92328 LINKER SEQADV 5YK7 GLY D 111 UNP Q92328 LINKER SEQADV 5YK7 SER D 112 UNP Q92328 LINKER SEQADV 5YK7 GLY D 113 UNP Q92328 LINKER SEQADV 5YK7 GLY D 114 UNP Q92328 LINKER SEQADV 5YK7 GLY D 183 UNP Q92328 LINKER SEQADV 5YK7 GLY D 184 UNP Q92328 LINKER SEQRES 1 A 255 ASN ASP ASP GLU ASN GLU ARG SER ARG GLN ILE ASP ASP SEQRES 2 A 255 ILE LEU GLU LYS THR TYR TYR ASN VAL ASP THR HIS PRO SEQRES 3 A 255 ALA GLU SER LEU ASP TRP PHE ASN VAL LEU ILE GLY GLN SEQRES 4 A 255 THR ILE GLN GLN LEU ARG GLU GLU ALA TRP LYS LYS ASP SEQRES 5 A 255 ASN ILE VAL TYR SER LEU ASN ALA PHE ILE GLU ARG LYS SEQRES 6 A 255 ALA GLN GLU LEU PRO SER TYR LEU ASP SER ILE LYS ILE SEQRES 7 A 255 THR GLU LEU ASP ILE GLY HIS ASP PHE PRO ILE PHE SER SEQRES 8 A 255 ASN CYS ARG ILE GLN TYR SER PRO ASN SER ASN GLY ARG SEQRES 9 A 255 LYS LEU GLU ALA LYS ILE ASP ILE ASP LEU ASN ASP ARG SEQRES 10 A 255 LEU ALA VAL GLY ILE GLU THR ARG LEU LEU LEU ASN TYR SEQRES 11 A 255 PRO LYS PRO LEU THR ALA SER LEU PRO ILE ASN VAL THR SEQRES 12 A 255 VAL SER ILE ILE ARG PHE GLN ALA CYS LEU THR VAL SER SEQRES 13 A 255 LEU THR LYS ALA GLU GLU PHE VAL PRO THR SER PRO GLU SEQRES 14 A 255 SER VAL ASP GLU ASP ASP ASN ASP GLY TYR PHE LEU MET SEQRES 15 A 255 PHE SER PHE ALA PRO GLU TYR ARG MET GLU PHE GLU THR SEQRES 16 A 255 GLN SER LEU ILE GLY ALA ARG SER LYS LEU GLU ASN ILE SEQRES 17 A 255 PRO LYS ILE GLY SER LEU VAL GLU TYR GLN ILE LYS LYS SEQRES 18 A 255 TRP PHE VAL GLU ARG CYS VAL GLU PRO ARG PHE GLN PHE SEQRES 19 A 255 ILE LYS LEU PRO SER VAL TRP PRO ARG SER LYS ASN THR SEQRES 20 A 255 ARG GLU GLY LYS ALA ASP VAL ASP SEQRES 1 B 208 MET SER PHE ASP ILE ASN TRP SER THR LEU GLU SER ASP SEQRES 2 B 208 ASN ARG LEU ASN ASP LEU ILE ARG LYS HIS LEU ASN SER SEQRES 3 B 208 TYR LEU GLN ASN THR GLN LEU PRO SER TYR VAL SER ASN SEQRES 4 B 208 LEU ARG VAL LEU ASP PHE ASP LEU GLY LYS VAL GLY PRO SEQRES 5 B 208 ALA ILE THR LEU LYS GLU ILE THR ASP PRO LEU ASP GLU SEQRES 6 B 208 PHE TYR ASP SER ILE ARG GLU GLU GLY GLY SER GLY GLY SEQRES 7 B 208 SER PRO ASN ASP ILE GLN PHE LEU LEU GLU VAL GLU TYR SEQRES 8 B 208 LYS GLY ASP LEU LEU VAL THR ILE GLY ALA ASP LEU VAL SEQRES 9 B 208 LEU ASN TYR PRO VAL GLU LYS PHE MET THR LEU PRO VAL SEQRES 10 B 208 LYS LEU SER ILE SER ASP ILE GLY LEU HIS SER LEU CYS SEQRES 11 B 208 ILE VAL ALA CYS LEU SER LYS GLN LEU PHE LEU SER PHE SEQRES 12 B 208 LEU CYS ASP GLY GLY SER ILE VAL ARG SER MET LYS ILE SEQRES 13 B 208 GLU THR GLU ILE GLY GLU GLN TYR GLN GLY GLN GLY SER SEQRES 14 B 208 VAL LEU ARG SER VAL GLY GLU LEU GLU GLN PHE LEU PHE SEQRES 15 B 208 THR ILE PHE LYS ASP PHE LEU ARG LYS GLU LEU ALA TRP SEQRES 16 B 208 PRO SER TRP ILE ASN LEU ASP PHE ASN ASP GLY ASP GLU SEQRES 1 C 255 ASN ASP ASP GLU ASN GLU ARG SER ARG GLN ILE ASP ASP SEQRES 2 C 255 ILE LEU GLU LYS THR TYR TYR ASN VAL ASP THR HIS PRO SEQRES 3 C 255 ALA GLU SER LEU ASP TRP PHE ASN VAL LEU ILE GLY GLN SEQRES 4 C 255 THR ILE GLN GLN LEU ARG GLU GLU ALA TRP LYS LYS ASP SEQRES 5 C 255 ASN ILE VAL TYR SER LEU ASN ALA PHE ILE GLU ARG LYS SEQRES 6 C 255 ALA GLN GLU LEU PRO SER TYR LEU ASP SER ILE LYS ILE SEQRES 7 C 255 THR GLU LEU ASP ILE GLY HIS ASP PHE PRO ILE PHE SER SEQRES 8 C 255 ASN CYS ARG ILE GLN TYR SER PRO ASN SER ASN GLY ARG SEQRES 9 C 255 LYS LEU GLU ALA LYS ILE ASP ILE ASP LEU ASN ASP ARG SEQRES 10 C 255 LEU ALA VAL GLY ILE GLU THR ARG LEU LEU LEU ASN TYR SEQRES 11 C 255 PRO LYS PRO LEU THR ALA SER LEU PRO ILE ASN VAL THR SEQRES 12 C 255 VAL SER ILE ILE ARG PHE GLN ALA CYS LEU THR VAL SER SEQRES 13 C 255 LEU THR LYS ALA GLU GLU PHE VAL PRO THR SER PRO GLU SEQRES 14 C 255 SER VAL ASP GLU ASP ASP ASN ASP GLY TYR PHE LEU MET SEQRES 15 C 255 PHE SER PHE ALA PRO GLU TYR ARG MET GLU PHE GLU THR SEQRES 16 C 255 GLN SER LEU ILE GLY ALA ARG SER LYS LEU GLU ASN ILE SEQRES 17 C 255 PRO LYS ILE GLY SER LEU VAL GLU TYR GLN ILE LYS LYS SEQRES 18 C 255 TRP PHE VAL GLU ARG CYS VAL GLU PRO ARG PHE GLN PHE SEQRES 19 C 255 ILE LYS LEU PRO SER VAL TRP PRO ARG SER LYS ASN THR SEQRES 20 C 255 ARG GLU GLY LYS ALA ASP VAL ASP SEQRES 1 D 208 MET SER PHE ASP ILE ASN TRP SER THR LEU GLU SER ASP SEQRES 2 D 208 ASN ARG LEU ASN ASP LEU ILE ARG LYS HIS LEU ASN SER SEQRES 3 D 208 TYR LEU GLN ASN THR GLN LEU PRO SER TYR VAL SER ASN SEQRES 4 D 208 LEU ARG VAL LEU ASP PHE ASP LEU GLY LYS VAL GLY PRO SEQRES 5 D 208 ALA ILE THR LEU LYS GLU ILE THR ASP PRO LEU ASP GLU SEQRES 6 D 208 PHE TYR ASP SER ILE ARG GLU GLU GLY GLY SER GLY GLY SEQRES 7 D 208 SER PRO ASN ASP ILE GLN PHE LEU LEU GLU VAL GLU TYR SEQRES 8 D 208 LYS GLY ASP LEU LEU VAL THR ILE GLY ALA ASP LEU VAL SEQRES 9 D 208 LEU ASN TYR PRO VAL GLU LYS PHE MET THR LEU PRO VAL SEQRES 10 D 208 LYS LEU SER ILE SER ASP ILE GLY LEU HIS SER LEU CYS SEQRES 11 D 208 ILE VAL ALA CYS LEU SER LYS GLN LEU PHE LEU SER PHE SEQRES 12 D 208 LEU CYS ASP GLY GLY SER ILE VAL ARG SER MET LYS ILE SEQRES 13 D 208 GLU THR GLU ILE GLY GLU GLN TYR GLN GLY GLN GLY SER SEQRES 14 D 208 VAL LEU ARG SER VAL GLY GLU LEU GLU GLN PHE LEU PHE SEQRES 15 D 208 THR ILE PHE LYS ASP PHE LEU ARG LYS GLU LEU ALA TRP SEQRES 16 D 208 PRO SER TRP ILE ASN LEU ASP PHE ASN ASP GLY ASP GLU HET PO4 A 501 5 HET PO4 A 502 5 HET PO4 B 301 5 HET PO4 C 501 5 HET PO4 C 502 5 HET PO4 D 301 5 HETNAM PO4 PHOSPHATE ION FORMUL 5 PO4 6(O4 P 3-) HELIX 1 AA1 ASN A 194 LYS A 206 1 13 HELIX 2 AA2 LEU A 219 GLU A 235 1 17 HELIX 3 AA3 TRP A 238 LYS A 254 1 17 HELIX 4 AA4 ALA A 255 GLU A 257 5 3 HELIX 5 AA5 ILE A 397 VAL A 417 1 21 HELIX 6 AA6 ARG A 432 THR A 436 5 5 HELIX 7 AA7 TRP B 7 GLU B 11 5 5 HELIX 8 AA8 ASP B 13 ASN B 30 1 18 HELIX 9 AA9 GLU B 65 GLU B 73 1 9 HELIX 10 AB1 GLY B 197 GLN B 201 5 5 HELIX 11 AB2 GLN B 203 LEU B 229 1 27 HELIX 12 AB3 ARG C 196 LYS C 206 1 11 HELIX 13 AB4 LEU C 219 GLU C 236 1 18 HELIX 14 AB5 ALA C 237 LYS C 254 1 18 HELIX 15 AB6 ILE C 397 VAL C 417 1 21 HELIX 16 AB7 ARG C 432 LYS C 434 5 3 HELIX 17 AB8 TRP D 7 ASP D 13 1 7 HELIX 18 AB9 ASP D 13 THR D 31 1 19 HELIX 19 AC1 GLU D 65 GLU D 73 1 9 HELIX 20 AC2 GLY D 197 GLN D 201 5 5 HELIX 21 AC3 GLN D 203 ALA D 230 1 28 SHEET 1 AA1 4 LYS A 266 ASP A 271 0 SHEET 2 AA1 4 LEU A 295 THR A 313 -1 O GLY A 310 N GLU A 269 SHEET 3 AA1 4 ILE A 329 SER A 345 -1 O LEU A 342 N ILE A 299 SHEET 4 AA1 4 MET A 371 PHE A 374 -1 O SER A 373 N THR A 343 SHEET 1 AA2 4 ILE A 278 TYR A 286 0 SHEET 2 AA2 4 LEU A 295 THR A 313 -1 O GLU A 296 N GLN A 285 SHEET 3 AA2 4 ILE A 329 SER A 345 -1 O LEU A 342 N ILE A 299 SHEET 4 AA2 4 ARG A 379 ILE A 388 -1 O GLU A 381 N ILE A 336 SHEET 1 AA3 2 PHE A 421 GLN A 422 0 SHEET 2 AA3 2 THR C 436 ARG C 437 -1 O ARG C 437 N PHE A 421 SHEET 1 AA4 4 ARG B 41 ASP B 46 0 SHEET 2 AA4 4 LEU B 132 LEU B 141 -1 O GLY B 136 N ARG B 41 SHEET 3 AA4 4 MET B 149 LEU B 171 -1 O LEU B 155 N ILE B 135 SHEET 4 AA4 4 VAL B 187 GLU B 195 -1 O GLU B 195 N LYS B 154 SHEET 1 AA5 5 ALA B 53 THR B 60 0 SHEET 2 AA5 5 ILE B 119 TYR B 127 -1 O GLU B 126 N ALA B 53 SHEET 3 AA5 5 MET B 149 LEU B 171 -1 O SER B 164 N VAL B 125 SHEET 4 AA5 5 GLN B 174 PHE B 179 -1 O SER B 178 N ILE B 167 SHEET 5 AA5 5 TRP B 234 ASN B 236 -1 O ILE B 235 N LEU B 177 SHEET 1 AA6 4 LYS C 266 ASP C 271 0 SHEET 2 AA6 4 LEU C 295 THR C 313 -1 O GLY C 310 N GLU C 269 SHEET 3 AA6 4 ILE C 329 SER C 345 -1 O LEU C 342 N ILE C 299 SHEET 4 AA6 4 ARG C 379 LEU C 387 -1 O ARG C 379 N GLN C 339 SHEET 1 AA7 5 ILE C 278 TYR C 286 0 SHEET 2 AA7 5 LEU C 295 THR C 313 -1 O GLU C 296 N GLN C 285 SHEET 3 AA7 5 ILE C 329 SER C 345 -1 O LEU C 342 N ILE C 299 SHEET 4 AA7 5 LEU C 370 PHE C 374 -1 O MET C 371 N SER C 345 SHEET 5 AA7 5 GLN C 422 ILE C 424 -1 O ILE C 424 N LEU C 370 SHEET 1 AA8 4 ARG D 41 ASP D 46 0 SHEET 2 AA8 4 LEU D 132 LEU D 141 -1 O LEU D 132 N ASP D 46 SHEET 3 AA8 4 MET D 149 CYS D 170 -1 O LEU D 155 N ILE D 135 SHEET 4 AA8 4 SER D 189 GLU D 195 -1 O LYS D 191 N SER D 158 SHEET 1 AA9 5 ALA D 53 THR D 60 0 SHEET 2 AA9 5 ILE D 119 TYR D 127 -1 O GLU D 126 N ALA D 53 SHEET 3 AA9 5 MET D 149 CYS D 170 -1 O LEU D 162 N TYR D 127 SHEET 4 AA9 5 LEU D 175 PHE D 179 -1 O SER D 178 N ILE D 167 SHEET 5 AA9 5 ILE D 235 ASN D 236 -1 O ILE D 235 N LEU D 177 CISPEP 1 ASN A 318 TYR A 319 0 1.61 CISPEP 2 PRO A 320 LYS A 321 0 2.57 CISPEP 3 LYS A 321 PRO A 322 0 -0.01 CISPEP 4 GLU A 418 PRO A 419 0 -1.23 CISPEP 5 SER B 172 LYS B 173 0 -4.24 CISPEP 6 TRP B 231 PRO B 232 0 8.98 CISPEP 7 ASN C 318 TYR C 319 0 2.54 CISPEP 8 PRO C 320 LYS C 321 0 7.91 CISPEP 9 LYS C 321 PRO C 322 0 -7.60 CISPEP 10 GLU C 418 PRO C 419 0 -0.24 CISPEP 11 SER D 172 LYS D 173 0 -1.39 CISPEP 12 TRP D 231 PRO D 232 0 5.27 SITE 1 AC1 2 SER A 428 LYS C 239 SITE 1 AC2 6 PHE A 250 TRP A 411 ARG A 415 PRO C 431 SITE 2 AC2 6 ARG C 432 SER C 433 SITE 1 AC3 5 PRO A 431 ARG A 432 SER A 433 TRP C 411 SITE 2 AC3 5 ARG C 415 SITE 1 AC4 2 LEU A 233 SER C 428 CRYST1 87.560 87.560 436.880 90.00 90.00 120.00 P 65 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011421 0.006594 0.000000 0.00000 SCALE2 0.000000 0.013188 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002289 0.00000