HEADER HYDROLASE 14-OCT-17 5YKD TITLE CRYSTAL STRUCTURE OF DIHYDROPYRIMIDINASE FROM PSEUDOMONAS AERUGINOSA TITLE 2 PAO1 AT 2.17 ANGSTROM RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: D-HYDANTOINASE/DIHYDROPYRIMIDINASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: DHPASE; COMPND 5 EC: 3.5.2.2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA (STRAIN ATCC 15692 / DSM SOURCE 3 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1); SOURCE 4 ORGANISM_TAXID: 208964; SOURCE 5 STRAIN: ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 SOURCE 6 / 1C / PRS 101 / PAO1; SOURCE 7 GENE: DHT, PA0441; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DIHYDROPYRIMIDINASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.H.HUANG,C.Y.HUANG REVDAT 3 22-NOV-23 5YKD 1 LINK REVDAT 2 02-MAY-18 5YKD 1 JRNL REVDAT 1 21-FEB-18 5YKD 0 JRNL AUTH J.H.CHENG,C.C.HUANG,Y.H.HUANG,C.Y.HUANG JRNL TITL STRUCTURAL BASIS FOR PH-DEPENDENT OLIGOMERIZATION OF JRNL TITL 2 DIHYDROPYRIMIDINASE FROMPSEUDOMONAS AERUGINOSAPAO1. JRNL REF BIOINORG CHEM APPL V.2018 64391 2018 JRNL REFN ISSN 1565-3633 JRNL PMID 29666631 JRNL DOI 10.1155/2018/9564391 REMARK 2 REMARK 2 RESOLUTION. 2.17 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.17 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 100197 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5328 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.17 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.23 REMARK 3 REFLECTION IN BIN (WORKING SET) : 7331 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2370 REMARK 3 BIN FREE R VALUE SET COUNT : 389 REMARK 3 BIN FREE R VALUE : 0.2950 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 14684 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 313 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.01000 REMARK 3 B22 (A**2) : -2.43000 REMARK 3 B33 (A**2) : 1.41000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.238 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.198 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.152 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.011 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 15052 ; 0.015 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 14032 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 20468 ; 1.650 ; 1.942 REMARK 3 BOND ANGLES OTHERS (DEGREES): 32172 ; 0.844 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1908 ; 6.457 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 696 ;36.047 ;23.161 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 2288 ;15.185 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 124 ;19.930 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 2220 ; 0.094 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 17420 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 3628 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 7635 ; 2.746 ; 3.746 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 7636 ; 2.746 ; 3.746 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 9540 ; 3.596 ; 5.610 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 9541 ; 3.596 ; 5.610 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 7416 ; 3.517 ; 4.123 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 7417 ; 3.517 ; 4.123 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 10929 ; 5.090 ; 6.035 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 17122 ; 6.122 ;30.365 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 17082 ; 6.127 ;30.359 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5YKD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-OCT-17. REMARK 100 THE DEPOSITION ID IS D_1300005438. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-DEC-15 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 5.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL13C1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.975 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 100197 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.170 REMARK 200 RESOLUTION RANGE LOW (A) : 117.790 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.12200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.1300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.17 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.26 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : 0.59900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5E5C REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG 8000, 100 MM HEPES, 200 MM REMARK 280 CALCIUM ACETATE PH 5.9, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 117.78600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 117.78600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 54.45600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 77.84950 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 54.45600 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 77.84950 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 117.78600 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 54.45600 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 77.84950 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 117.78600 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 54.45600 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 77.84950 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET B 1 REMARK 465 MET C 1 REMARK 465 MET D 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 479 C O NH2 REMARK 470 ARG B 479 C O NH2 REMARK 470 ARG C 479 C O NH2 REMARK 470 ARG D 479 C O NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER C 2 SG CYS C 41 1.82 REMARK 500 OG SER B 2 SG CYS B 41 2.13 REMARK 500 O GLY A 450 O HOH A 601 2.14 REMARK 500 OG SER D 2 SG CYS D 41 2.18 REMARK 500 O SER D 72 NH1 ARG D 412 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLN C 399 OE1 GLN C 399 3455 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 272 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ARG A 467 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 467 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG B 412 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG B 412 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG B 424 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG B 479 NE - CZ - NH1 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG C 110 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG C 473 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 63 44.39 38.45 REMARK 500 ALA A 154 -164.99 -101.45 REMARK 500 ASN A 157 7.62 56.07 REMARK 500 ALA A 158 -95.14 -118.78 REMARK 500 HIS A 239 63.04 31.04 REMARK 500 HIS A 317 105.70 -59.56 REMARK 500 ASP A 331 103.71 -163.03 REMARK 500 SER A 369 -58.18 -148.45 REMARK 500 GLU A 419 119.21 -33.72 REMARK 500 GLU B 14 -0.91 -145.20 REMARK 500 ASN B 34 58.44 29.58 REMARK 500 GLN B 63 43.95 39.28 REMARK 500 ASN B 147 17.40 -140.45 REMARK 500 ALA B 154 -164.75 -103.38 REMARK 500 TYR B 155 60.30 61.57 REMARK 500 ASN B 157 26.08 47.74 REMARK 500 ALA B 158 -97.35 -134.31 REMARK 500 HIS B 239 73.62 23.14 REMARK 500 ALA B 326 -6.43 -59.61 REMARK 500 SER B 369 -55.55 -145.52 REMARK 500 ALA B 440 72.39 37.17 REMARK 500 ASN C 34 55.84 29.72 REMARK 500 PHE C 66 137.34 -172.74 REMARK 500 ASN C 157 11.93 57.38 REMARK 500 ALA C 158 -98.69 -126.07 REMARK 500 ARG C 212 62.74 -157.41 REMARK 500 HIS C 239 72.53 28.64 REMARK 500 ASP C 331 100.60 -166.10 REMARK 500 SER C 369 -51.46 -147.51 REMARK 500 ASN C 377 36.42 74.50 REMARK 500 GLU D 14 -11.39 -142.85 REMARK 500 ASN D 34 79.09 34.82 REMARK 500 PHE D 66 132.56 -173.11 REMARK 500 ARG D 99 -5.42 72.90 REMARK 500 LYS D 115 0.15 -63.58 REMARK 500 TYR D 155 65.98 64.14 REMARK 500 ALA D 158 -100.73 -136.92 REMARK 500 ARG D 212 68.66 -155.50 REMARK 500 HIS D 239 72.38 28.14 REMARK 500 ASP D 331 98.10 -160.39 REMARK 500 SER D 369 -48.67 -149.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 59 NE2 REMARK 620 2 HIS A 61 NE2 102.7 REMARK 620 3 KCX A 150 OQ2 96.7 99.3 REMARK 620 4 ASP A 316 OD1 79.3 82.7 175.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 KCX A 150 OQ1 REMARK 620 2 HIS A 183 ND1 95.7 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 59 NE2 REMARK 620 2 HIS B 61 NE2 101.3 REMARK 620 3 KCX B 150 OQ1 92.3 90.1 REMARK 620 4 ASP B 316 OD1 80.6 85.9 170.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 KCX B 150 OQ2 REMARK 620 2 HIS B 183 ND1 97.5 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 59 NE2 REMARK 620 2 HIS C 61 NE2 100.4 REMARK 620 3 KCX C 150 OQ2 93.4 96.0 REMARK 620 4 ASP C 316 OD1 81.8 78.7 172.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 KCX C 150 OQ1 REMARK 620 2 HIS C 239 NE2 98.1 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS D 59 NE2 REMARK 620 2 HIS D 61 NE2 98.2 REMARK 620 3 KCX D 150 OQ1 91.5 90.3 REMARK 620 4 ASP D 316 OD1 84.1 83.9 172.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 KCX D 150 OQ2 REMARK 620 2 HIS D 183 ND1 100.9 REMARK 620 3 HOH D 650 O 94.3 84.1 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN C 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN C 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN D 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN D 502 DBREF 5YKD A 1 479 UNP Q9I676 HYDA_PSEAE 1 479 DBREF 5YKD B 1 479 UNP Q9I676 HYDA_PSEAE 1 479 DBREF 5YKD C 1 479 UNP Q9I676 HYDA_PSEAE 1 479 DBREF 5YKD D 1 479 UNP Q9I676 HYDA_PSEAE 1 479 SEQRES 1 A 479 MET SER LEU LEU ILE ARG GLY ALA THR VAL VAL THR HIS SEQRES 2 A 479 GLU GLU SER TYR ARG ALA ASP VAL LEU CYS ALA ASN GLY SEQRES 3 A 479 LEU ILE GLN ALA ILE GLY GLU ASN LEU GLU THR PRO SER SEQRES 4 A 479 GLY CYS ASP VAL LEU ASP GLY GLY GLY GLN TYR LEU MET SEQRES 5 A 479 PRO GLY GLY ILE ASP PRO HIS THR HIS MET GLN LEU PRO SEQRES 6 A 479 PHE MET GLY THR VAL ALA SER GLU ASP PHE PHE SER GLY SEQRES 7 A 479 THR ALA ALA GLY LEU ALA GLY GLY THR THR SER ILE ILE SEQRES 8 A 479 ASP PHE VAL ILE PRO ASN PRO ARG GLN SER LEU LEU GLU SEQRES 9 A 479 ALA PHE HIS THR TRP ARG GLY TRP ALA GLN LYS SER ALA SEQRES 10 A 479 ALA ASP TYR GLY PHE HIS VAL ALA ILE THR TRP TRP SER SEQRES 11 A 479 ASP GLU VAL ALA ARG GLU MET GLY GLU LEU VAL ALA GLN SEQRES 12 A 479 HIS GLY VAL ASN SER PHE KCX HIS PHE MET ALA TYR LYS SEQRES 13 A 479 ASN ALA ILE MET ALA ALA ASP ASP THR LEU VAL ALA SER SEQRES 14 A 479 PHE GLU ARG CYS LEU GLU LEU GLY ALA VAL PRO THR VAL SEQRES 15 A 479 HIS ALA GLU ASN GLY GLU LEU VAL PHE HIS LEU GLN GLN SEQRES 16 A 479 LYS LEU LEU ALA GLN GLY LEU THR GLY PRO GLU ALA HIS SEQRES 17 A 479 PRO LEU SER ARG PRO PRO GLN VAL GLU GLY GLU ALA ALA SEQRES 18 A 479 SER ARG ALA ILE ARG ILE ALA GLU THR LEU GLY THR PRO SEQRES 19 A 479 LEU TYR LEU VAL HIS ILE SER SER ARG GLU ALA LEU ASP SEQRES 20 A 479 GLU ILE ALA TYR ALA ARG ALA LYS GLY GLN PRO VAL TYR SEQRES 21 A 479 GLY GLU VAL LEU ALA GLY HIS LEU LEU LEU ASP ASP SER SEQRES 22 A 479 VAL TYR ARG HIS PRO ASP TRP ALA THR ALA ALA GLY TYR SEQRES 23 A 479 VAL MET SER PRO PRO PHE ARG PRO VAL GLU HIS GLN GLU SEQRES 24 A 479 ALA LEU TRP ARG GLY LEU GLN SER GLY ASN LEU HIS THR SEQRES 25 A 479 THR ALA THR ASP HIS CYS CYS PHE CYS ALA GLU GLN LYS SEQRES 26 A 479 ALA MET GLY ARG ASP ASP PHE SER LYS ILE PRO ASN GLY SEQRES 27 A 479 THR ALA GLY ILE GLU ASP ARG MET ALA LEU LEU TRP ASP SEQRES 28 A 479 ALA GLY VAL ASN SER GLY ARG LEU SER MET HIS GLU PHE SEQRES 29 A 479 VAL ALA LEU THR SER THR ASN THR ALA LYS ILE PHE ASN SEQRES 30 A 479 LEU PHE PRO ARG LYS GLY ALA ILE ARG VAL GLY ALA ASP SEQRES 31 A 479 ALA ASP LEU VAL LEU TRP ASP PRO GLN GLY SER ARG THR SEQRES 32 A 479 LEU SER ALA ALA THR HIS HIS GLN ARG VAL ASP PHE ASN SEQRES 33 A 479 ILE PHE GLU GLY ARG THR VAL ARG GLY ILE PRO SER HIS SEQRES 34 A 479 THR ILE SER GLN GLY LYS LEU LEU TRP ALA ALA GLY ASP SEQRES 35 A 479 LEU ARG ALA GLU PRO GLY ALA GLY ARG TYR VAL GLU ARG SEQRES 36 A 479 PRO ALA TYR PRO SER VAL TYR GLU VAL LEU GLY ARG ARG SEQRES 37 A 479 ALA GLU ARG GLN ARG PRO VAL ALA VAL GLU ARG SEQRES 1 B 479 MET SER LEU LEU ILE ARG GLY ALA THR VAL VAL THR HIS SEQRES 2 B 479 GLU GLU SER TYR ARG ALA ASP VAL LEU CYS ALA ASN GLY SEQRES 3 B 479 LEU ILE GLN ALA ILE GLY GLU ASN LEU GLU THR PRO SER SEQRES 4 B 479 GLY CYS ASP VAL LEU ASP GLY GLY GLY GLN TYR LEU MET SEQRES 5 B 479 PRO GLY GLY ILE ASP PRO HIS THR HIS MET GLN LEU PRO SEQRES 6 B 479 PHE MET GLY THR VAL ALA SER GLU ASP PHE PHE SER GLY SEQRES 7 B 479 THR ALA ALA GLY LEU ALA GLY GLY THR THR SER ILE ILE SEQRES 8 B 479 ASP PHE VAL ILE PRO ASN PRO ARG GLN SER LEU LEU GLU SEQRES 9 B 479 ALA PHE HIS THR TRP ARG GLY TRP ALA GLN LYS SER ALA SEQRES 10 B 479 ALA ASP TYR GLY PHE HIS VAL ALA ILE THR TRP TRP SER SEQRES 11 B 479 ASP GLU VAL ALA ARG GLU MET GLY GLU LEU VAL ALA GLN SEQRES 12 B 479 HIS GLY VAL ASN SER PHE KCX HIS PHE MET ALA TYR LYS SEQRES 13 B 479 ASN ALA ILE MET ALA ALA ASP ASP THR LEU VAL ALA SER SEQRES 14 B 479 PHE GLU ARG CYS LEU GLU LEU GLY ALA VAL PRO THR VAL SEQRES 15 B 479 HIS ALA GLU ASN GLY GLU LEU VAL PHE HIS LEU GLN GLN SEQRES 16 B 479 LYS LEU LEU ALA GLN GLY LEU THR GLY PRO GLU ALA HIS SEQRES 17 B 479 PRO LEU SER ARG PRO PRO GLN VAL GLU GLY GLU ALA ALA SEQRES 18 B 479 SER ARG ALA ILE ARG ILE ALA GLU THR LEU GLY THR PRO SEQRES 19 B 479 LEU TYR LEU VAL HIS ILE SER SER ARG GLU ALA LEU ASP SEQRES 20 B 479 GLU ILE ALA TYR ALA ARG ALA LYS GLY GLN PRO VAL TYR SEQRES 21 B 479 GLY GLU VAL LEU ALA GLY HIS LEU LEU LEU ASP ASP SER SEQRES 22 B 479 VAL TYR ARG HIS PRO ASP TRP ALA THR ALA ALA GLY TYR SEQRES 23 B 479 VAL MET SER PRO PRO PHE ARG PRO VAL GLU HIS GLN GLU SEQRES 24 B 479 ALA LEU TRP ARG GLY LEU GLN SER GLY ASN LEU HIS THR SEQRES 25 B 479 THR ALA THR ASP HIS CYS CYS PHE CYS ALA GLU GLN LYS SEQRES 26 B 479 ALA MET GLY ARG ASP ASP PHE SER LYS ILE PRO ASN GLY SEQRES 27 B 479 THR ALA GLY ILE GLU ASP ARG MET ALA LEU LEU TRP ASP SEQRES 28 B 479 ALA GLY VAL ASN SER GLY ARG LEU SER MET HIS GLU PHE SEQRES 29 B 479 VAL ALA LEU THR SER THR ASN THR ALA LYS ILE PHE ASN SEQRES 30 B 479 LEU PHE PRO ARG LYS GLY ALA ILE ARG VAL GLY ALA ASP SEQRES 31 B 479 ALA ASP LEU VAL LEU TRP ASP PRO GLN GLY SER ARG THR SEQRES 32 B 479 LEU SER ALA ALA THR HIS HIS GLN ARG VAL ASP PHE ASN SEQRES 33 B 479 ILE PHE GLU GLY ARG THR VAL ARG GLY ILE PRO SER HIS SEQRES 34 B 479 THR ILE SER GLN GLY LYS LEU LEU TRP ALA ALA GLY ASP SEQRES 35 B 479 LEU ARG ALA GLU PRO GLY ALA GLY ARG TYR VAL GLU ARG SEQRES 36 B 479 PRO ALA TYR PRO SER VAL TYR GLU VAL LEU GLY ARG ARG SEQRES 37 B 479 ALA GLU ARG GLN ARG PRO VAL ALA VAL GLU ARG SEQRES 1 C 479 MET SER LEU LEU ILE ARG GLY ALA THR VAL VAL THR HIS SEQRES 2 C 479 GLU GLU SER TYR ARG ALA ASP VAL LEU CYS ALA ASN GLY SEQRES 3 C 479 LEU ILE GLN ALA ILE GLY GLU ASN LEU GLU THR PRO SER SEQRES 4 C 479 GLY CYS ASP VAL LEU ASP GLY GLY GLY GLN TYR LEU MET SEQRES 5 C 479 PRO GLY GLY ILE ASP PRO HIS THR HIS MET GLN LEU PRO SEQRES 6 C 479 PHE MET GLY THR VAL ALA SER GLU ASP PHE PHE SER GLY SEQRES 7 C 479 THR ALA ALA GLY LEU ALA GLY GLY THR THR SER ILE ILE SEQRES 8 C 479 ASP PHE VAL ILE PRO ASN PRO ARG GLN SER LEU LEU GLU SEQRES 9 C 479 ALA PHE HIS THR TRP ARG GLY TRP ALA GLN LYS SER ALA SEQRES 10 C 479 ALA ASP TYR GLY PHE HIS VAL ALA ILE THR TRP TRP SER SEQRES 11 C 479 ASP GLU VAL ALA ARG GLU MET GLY GLU LEU VAL ALA GLN SEQRES 12 C 479 HIS GLY VAL ASN SER PHE KCX HIS PHE MET ALA TYR LYS SEQRES 13 C 479 ASN ALA ILE MET ALA ALA ASP ASP THR LEU VAL ALA SER SEQRES 14 C 479 PHE GLU ARG CYS LEU GLU LEU GLY ALA VAL PRO THR VAL SEQRES 15 C 479 HIS ALA GLU ASN GLY GLU LEU VAL PHE HIS LEU GLN GLN SEQRES 16 C 479 LYS LEU LEU ALA GLN GLY LEU THR GLY PRO GLU ALA HIS SEQRES 17 C 479 PRO LEU SER ARG PRO PRO GLN VAL GLU GLY GLU ALA ALA SEQRES 18 C 479 SER ARG ALA ILE ARG ILE ALA GLU THR LEU GLY THR PRO SEQRES 19 C 479 LEU TYR LEU VAL HIS ILE SER SER ARG GLU ALA LEU ASP SEQRES 20 C 479 GLU ILE ALA TYR ALA ARG ALA LYS GLY GLN PRO VAL TYR SEQRES 21 C 479 GLY GLU VAL LEU ALA GLY HIS LEU LEU LEU ASP ASP SER SEQRES 22 C 479 VAL TYR ARG HIS PRO ASP TRP ALA THR ALA ALA GLY TYR SEQRES 23 C 479 VAL MET SER PRO PRO PHE ARG PRO VAL GLU HIS GLN GLU SEQRES 24 C 479 ALA LEU TRP ARG GLY LEU GLN SER GLY ASN LEU HIS THR SEQRES 25 C 479 THR ALA THR ASP HIS CYS CYS PHE CYS ALA GLU GLN LYS SEQRES 26 C 479 ALA MET GLY ARG ASP ASP PHE SER LYS ILE PRO ASN GLY SEQRES 27 C 479 THR ALA GLY ILE GLU ASP ARG MET ALA LEU LEU TRP ASP SEQRES 28 C 479 ALA GLY VAL ASN SER GLY ARG LEU SER MET HIS GLU PHE SEQRES 29 C 479 VAL ALA LEU THR SER THR ASN THR ALA LYS ILE PHE ASN SEQRES 30 C 479 LEU PHE PRO ARG LYS GLY ALA ILE ARG VAL GLY ALA ASP SEQRES 31 C 479 ALA ASP LEU VAL LEU TRP ASP PRO GLN GLY SER ARG THR SEQRES 32 C 479 LEU SER ALA ALA THR HIS HIS GLN ARG VAL ASP PHE ASN SEQRES 33 C 479 ILE PHE GLU GLY ARG THR VAL ARG GLY ILE PRO SER HIS SEQRES 34 C 479 THR ILE SER GLN GLY LYS LEU LEU TRP ALA ALA GLY ASP SEQRES 35 C 479 LEU ARG ALA GLU PRO GLY ALA GLY ARG TYR VAL GLU ARG SEQRES 36 C 479 PRO ALA TYR PRO SER VAL TYR GLU VAL LEU GLY ARG ARG SEQRES 37 C 479 ALA GLU ARG GLN ARG PRO VAL ALA VAL GLU ARG SEQRES 1 D 479 MET SER LEU LEU ILE ARG GLY ALA THR VAL VAL THR HIS SEQRES 2 D 479 GLU GLU SER TYR ARG ALA ASP VAL LEU CYS ALA ASN GLY SEQRES 3 D 479 LEU ILE GLN ALA ILE GLY GLU ASN LEU GLU THR PRO SER SEQRES 4 D 479 GLY CYS ASP VAL LEU ASP GLY GLY GLY GLN TYR LEU MET SEQRES 5 D 479 PRO GLY GLY ILE ASP PRO HIS THR HIS MET GLN LEU PRO SEQRES 6 D 479 PHE MET GLY THR VAL ALA SER GLU ASP PHE PHE SER GLY SEQRES 7 D 479 THR ALA ALA GLY LEU ALA GLY GLY THR THR SER ILE ILE SEQRES 8 D 479 ASP PHE VAL ILE PRO ASN PRO ARG GLN SER LEU LEU GLU SEQRES 9 D 479 ALA PHE HIS THR TRP ARG GLY TRP ALA GLN LYS SER ALA SEQRES 10 D 479 ALA ASP TYR GLY PHE HIS VAL ALA ILE THR TRP TRP SER SEQRES 11 D 479 ASP GLU VAL ALA ARG GLU MET GLY GLU LEU VAL ALA GLN SEQRES 12 D 479 HIS GLY VAL ASN SER PHE KCX HIS PHE MET ALA TYR LYS SEQRES 13 D 479 ASN ALA ILE MET ALA ALA ASP ASP THR LEU VAL ALA SER SEQRES 14 D 479 PHE GLU ARG CYS LEU GLU LEU GLY ALA VAL PRO THR VAL SEQRES 15 D 479 HIS ALA GLU ASN GLY GLU LEU VAL PHE HIS LEU GLN GLN SEQRES 16 D 479 LYS LEU LEU ALA GLN GLY LEU THR GLY PRO GLU ALA HIS SEQRES 17 D 479 PRO LEU SER ARG PRO PRO GLN VAL GLU GLY GLU ALA ALA SEQRES 18 D 479 SER ARG ALA ILE ARG ILE ALA GLU THR LEU GLY THR PRO SEQRES 19 D 479 LEU TYR LEU VAL HIS ILE SER SER ARG GLU ALA LEU ASP SEQRES 20 D 479 GLU ILE ALA TYR ALA ARG ALA LYS GLY GLN PRO VAL TYR SEQRES 21 D 479 GLY GLU VAL LEU ALA GLY HIS LEU LEU LEU ASP ASP SER SEQRES 22 D 479 VAL TYR ARG HIS PRO ASP TRP ALA THR ALA ALA GLY TYR SEQRES 23 D 479 VAL MET SER PRO PRO PHE ARG PRO VAL GLU HIS GLN GLU SEQRES 24 D 479 ALA LEU TRP ARG GLY LEU GLN SER GLY ASN LEU HIS THR SEQRES 25 D 479 THR ALA THR ASP HIS CYS CYS PHE CYS ALA GLU GLN LYS SEQRES 26 D 479 ALA MET GLY ARG ASP ASP PHE SER LYS ILE PRO ASN GLY SEQRES 27 D 479 THR ALA GLY ILE GLU ASP ARG MET ALA LEU LEU TRP ASP SEQRES 28 D 479 ALA GLY VAL ASN SER GLY ARG LEU SER MET HIS GLU PHE SEQRES 29 D 479 VAL ALA LEU THR SER THR ASN THR ALA LYS ILE PHE ASN SEQRES 30 D 479 LEU PHE PRO ARG LYS GLY ALA ILE ARG VAL GLY ALA ASP SEQRES 31 D 479 ALA ASP LEU VAL LEU TRP ASP PRO GLN GLY SER ARG THR SEQRES 32 D 479 LEU SER ALA ALA THR HIS HIS GLN ARG VAL ASP PHE ASN SEQRES 33 D 479 ILE PHE GLU GLY ARG THR VAL ARG GLY ILE PRO SER HIS SEQRES 34 D 479 THR ILE SER GLN GLY LYS LEU LEU TRP ALA ALA GLY ASP SEQRES 35 D 479 LEU ARG ALA GLU PRO GLY ALA GLY ARG TYR VAL GLU ARG SEQRES 36 D 479 PRO ALA TYR PRO SER VAL TYR GLU VAL LEU GLY ARG ARG SEQRES 37 D 479 ALA GLU ARG GLN ARG PRO VAL ALA VAL GLU ARG MODRES 5YKD KCX A 150 LYS MODIFIED RESIDUE MODRES 5YKD KCX B 150 LYS MODIFIED RESIDUE MODRES 5YKD KCX C 150 LYS MODIFIED RESIDUE MODRES 5YKD KCX D 150 LYS MODIFIED RESIDUE HET KCX A 150 12 HET KCX B 150 12 HET KCX C 150 12 HET KCX D 150 12 HET ZN A 501 1 HET ZN A 502 1 HET ZN B 501 1 HET ZN B 502 1 HET ZN C 501 1 HET ZN C 502 1 HET ZN D 501 1 HET ZN D 502 1 HETNAM KCX LYSINE NZ-CARBOXYLIC ACID HETNAM ZN ZINC ION FORMUL 1 KCX 4(C7 H14 N2 O4) FORMUL 5 ZN 8(ZN 2+) FORMUL 13 HOH *313(H2 O) HELIX 1 AA1 ASP A 74 GLY A 85 1 12 HELIX 2 AA2 SER A 101 GLN A 114 1 14 HELIX 3 AA3 SER A 130 GLY A 145 1 16 HELIX 4 AA4 ALA A 162 GLY A 177 1 16 HELIX 5 AA5 ASN A 186 GLY A 201 1 16 HELIX 6 AA6 GLU A 206 ARG A 212 1 7 HELIX 7 AA7 PRO A 213 GLY A 232 1 20 HELIX 8 AA8 SER A 242 ALA A 254 1 13 HELIX 9 AA9 ALA A 265 LEU A 270 1 6 HELIX 10 AB1 ASP A 271 HIS A 277 5 7 HELIX 11 AB2 ASP A 279 TYR A 286 1 8 HELIX 12 AB3 PRO A 294 SER A 307 1 14 HELIX 13 AB4 CYS A 321 ALA A 326 1 6 HELIX 14 AB5 MET A 327 ARG A 329 5 3 HELIX 15 AB6 ASP A 331 ILE A 335 5 5 HELIX 16 AB7 ASP A 344 VAL A 354 1 11 HELIX 17 AB8 SER A 360 SER A 369 1 10 HELIX 18 AB9 SER A 369 PHE A 376 1 8 HELIX 19 AC1 SER A 460 ARG A 473 1 14 HELIX 20 AC2 ASP B 74 GLY B 85 1 12 HELIX 21 AC3 SER B 101 GLN B 114 1 14 HELIX 22 AC4 SER B 130 GLY B 145 1 16 HELIX 23 AC5 ALA B 162 GLY B 177 1 16 HELIX 24 AC6 ASN B 186 GLN B 200 1 15 HELIX 25 AC7 GLU B 206 SER B 211 1 6 HELIX 26 AC8 PRO B 213 GLY B 232 1 20 HELIX 27 AC9 SER B 242 ALA B 254 1 13 HELIX 28 AD1 ALA B 265 LEU B 270 1 6 HELIX 29 AD2 ASP B 271 HIS B 277 5 7 HELIX 30 AD3 ASP B 279 GLY B 285 1 7 HELIX 31 AD4 VAL B 295 SER B 307 1 13 HELIX 32 AD5 CYS B 321 ALA B 326 1 6 HELIX 33 AD6 MET B 327 ARG B 329 5 3 HELIX 34 AD7 ASP B 331 ILE B 335 5 5 HELIX 35 AD8 ASP B 344 VAL B 354 1 11 HELIX 36 AD9 SER B 360 SER B 369 1 10 HELIX 37 AE1 SER B 369 PHE B 376 1 8 HELIX 38 AE2 SER B 460 GLN B 472 1 13 HELIX 39 AE3 ASP C 74 GLY C 85 1 12 HELIX 40 AE4 SER C 101 GLN C 114 1 14 HELIX 41 AE5 SER C 130 HIS C 144 1 15 HELIX 42 AE6 ALA C 162 GLY C 177 1 16 HELIX 43 AE7 ASN C 186 GLN C 200 1 15 HELIX 44 AE8 GLU C 206 SER C 211 1 6 HELIX 45 AE9 PRO C 213 GLY C 232 1 20 HELIX 46 AF1 SER C 242 ALA C 254 1 13 HELIX 47 AF2 ALA C 265 LEU C 270 1 6 HELIX 48 AF3 ASP C 271 HIS C 277 5 7 HELIX 49 AF4 ASP C 279 GLY C 285 1 7 HELIX 50 AF5 PRO C 294 SER C 307 1 14 HELIX 51 AF6 CYS C 321 ALA C 326 1 6 HELIX 52 AF7 MET C 327 ARG C 329 5 3 HELIX 53 AF8 ASP C 331 ILE C 335 5 5 HELIX 54 AF9 ASP C 344 VAL C 354 1 11 HELIX 55 AG1 SER C 360 SER C 369 1 10 HELIX 56 AG2 SER C 369 PHE C 376 1 8 HELIX 57 AG3 SER C 460 GLN C 472 1 13 HELIX 58 AG4 ASP D 74 GLY D 85 1 12 HELIX 59 AG5 SER D 101 GLN D 114 1 14 HELIX 60 AG6 SER D 130 GLY D 145 1 16 HELIX 61 AG7 ALA D 162 GLY D 177 1 16 HELIX 62 AG8 ASN D 186 GLN D 200 1 15 HELIX 63 AG9 GLU D 206 SER D 211 1 6 HELIX 64 AH1 PRO D 213 GLY D 232 1 20 HELIX 65 AH2 SER D 242 ALA D 254 1 13 HELIX 66 AH3 ALA D 265 LEU D 270 1 6 HELIX 67 AH4 ASP D 271 HIS D 277 5 7 HELIX 68 AH5 ASP D 279 TYR D 286 1 8 HELIX 69 AH6 PRO D 294 SER D 307 1 14 HELIX 70 AH7 CYS D 321 ALA D 326 1 6 HELIX 71 AH8 MET D 327 ARG D 329 5 3 HELIX 72 AH9 ASP D 331 ILE D 335 5 5 HELIX 73 AI1 ASP D 344 VAL D 354 1 11 HELIX 74 AI2 SER D 360 SER D 369 1 10 HELIX 75 AI3 SER D 369 PHE D 376 1 8 HELIX 76 AI4 SER D 460 GLN D 472 1 13 SHEET 1 AA1 4 LEU A 27 GLY A 32 0 SHEET 2 AA1 4 ASP A 20 ALA A 24 -1 N ASP A 20 O GLY A 32 SHEET 3 AA1 4 LEU A 3 ARG A 6 -1 N LEU A 3 O CYS A 23 SHEET 4 AA1 4 ASP A 42 ASP A 45 1 O LEU A 44 N LEU A 4 SHEET 1 AA2 7 SER A 16 ARG A 18 0 SHEET 2 AA2 7 THR A 9 VAL A 11 -1 N VAL A 10 O TYR A 17 SHEET 3 AA2 7 TYR A 50 PRO A 53 1 O LEU A 51 N THR A 9 SHEET 4 AA2 7 LEU A 393 THR A 403 -1 O VAL A 394 N MET A 52 SHEET 5 AA2 7 THR A 422 SER A 432 -1 O VAL A 423 N ARG A 402 SHEET 6 AA2 7 LYS A 435 ALA A 439 -1 O LEU A 437 N THR A 430 SHEET 7 AA2 7 ASP A 442 LEU A 443 -1 O ASP A 442 N ALA A 439 SHEET 1 AA3 8 GLY A 55 THR A 60 0 SHEET 2 AA3 8 THR A 87 VAL A 94 1 O SER A 89 N ASP A 57 SHEET 3 AA3 8 ASP A 119 ALA A 125 1 O ALA A 125 N VAL A 94 SHEET 4 AA3 8 SER A 148 PHE A 152 1 O SER A 148 N VAL A 124 SHEET 5 AA3 8 VAL A 179 HIS A 183 1 O HIS A 183 N HIS A 151 SHEET 6 AA3 8 LEU A 235 LEU A 237 1 O TYR A 236 N PRO A 180 SHEET 7 AA3 8 VAL A 259 LEU A 264 1 O TYR A 260 N LEU A 237 SHEET 8 AA3 8 THR A 312 ALA A 314 1 O THR A 312 N VAL A 263 SHEET 1 AA4 2 PRO A 65 PHE A 66 0 SHEET 2 AA4 2 THR A 69 VAL A 70 -1 O THR A 69 N PHE A 66 SHEET 1 AA5 4 LEU B 27 GLY B 32 0 SHEET 2 AA5 4 ASP B 20 ALA B 24 -1 N LEU B 22 O GLN B 29 SHEET 3 AA5 4 LEU B 3 ARG B 6 -1 N ILE B 5 O VAL B 21 SHEET 4 AA5 4 ASP B 42 ASP B 45 1 O ASP B 42 N LEU B 4 SHEET 1 AA6 7 SER B 16 ARG B 18 0 SHEET 2 AA6 7 THR B 9 VAL B 11 -1 N VAL B 10 O TYR B 17 SHEET 3 AA6 7 TYR B 50 PRO B 53 1 O LEU B 51 N THR B 9 SHEET 4 AA6 7 LEU B 393 THR B 403 -1 O TRP B 396 N TYR B 50 SHEET 5 AA6 7 THR B 422 SER B 432 -1 O GLY B 425 N GLY B 400 SHEET 6 AA6 7 LYS B 435 ALA B 439 -1 O LYS B 435 N SER B 432 SHEET 7 AA6 7 ASP B 442 LEU B 443 -1 O ASP B 442 N ALA B 439 SHEET 1 AA7 8 GLY B 55 THR B 60 0 SHEET 2 AA7 8 THR B 87 VAL B 94 1 O ILE B 91 N ASP B 57 SHEET 3 AA7 8 ASP B 119 ALA B 125 1 O GLY B 121 N ASP B 92 SHEET 4 AA7 8 SER B 148 PHE B 152 1 O SER B 148 N VAL B 124 SHEET 5 AA7 8 VAL B 179 HIS B 183 1 O THR B 181 N PHE B 149 SHEET 6 AA7 8 LEU B 235 LEU B 237 1 O TYR B 236 N VAL B 182 SHEET 7 AA7 8 VAL B 259 LEU B 264 1 O TYR B 260 N LEU B 237 SHEET 8 AA7 8 THR B 312 ALA B 314 1 O THR B 312 N VAL B 263 SHEET 1 AA8 2 PRO B 65 PHE B 66 0 SHEET 2 AA8 2 THR B 69 VAL B 70 -1 O THR B 69 N PHE B 66 SHEET 1 AA9 4 LEU C 27 GLY C 32 0 SHEET 2 AA9 4 ASP C 20 ALA C 24 -1 N LEU C 22 O ALA C 30 SHEET 3 AA9 4 LEU C 3 ARG C 6 -1 N ILE C 5 O VAL C 21 SHEET 4 AA9 4 ASP C 42 ASP C 45 1 O LEU C 44 N LEU C 4 SHEET 1 AB1 7 SER C 16 ARG C 18 0 SHEET 2 AB1 7 THR C 9 VAL C 11 -1 N VAL C 10 O TYR C 17 SHEET 3 AB1 7 TYR C 50 PRO C 53 1 O LEU C 51 N VAL C 11 SHEET 4 AB1 7 LEU C 393 THR C 403 -1 O TRP C 396 N TYR C 50 SHEET 5 AB1 7 THR C 422 SER C 432 -1 O ILE C 426 N ASP C 397 SHEET 6 AB1 7 LYS C 435 ALA C 439 -1 O LYS C 435 N SER C 432 SHEET 7 AB1 7 ASP C 442 LEU C 443 -1 O ASP C 442 N ALA C 439 SHEET 1 AB2 8 GLY C 55 THR C 60 0 SHEET 2 AB2 8 THR C 87 VAL C 94 1 O SER C 89 N ASP C 57 SHEET 3 AB2 8 ASP C 119 ALA C 125 1 O ALA C 125 N VAL C 94 SHEET 4 AB2 8 SER C 148 PHE C 152 1 O KCX C 150 N VAL C 124 SHEET 5 AB2 8 VAL C 179 HIS C 183 1 O THR C 181 N PHE C 149 SHEET 6 AB2 8 LEU C 235 LEU C 237 1 O TYR C 236 N PRO C 180 SHEET 7 AB2 8 VAL C 259 LEU C 264 1 O TYR C 260 N LEU C 237 SHEET 8 AB2 8 THR C 312 ALA C 314 1 N THR C 312 O GLY C 261 SHEET 1 AB3 2 PRO C 65 PHE C 66 0 SHEET 2 AB3 2 THR C 69 VAL C 70 -1 O THR C 69 N PHE C 66 SHEET 1 AB4 4 LEU D 27 GLY D 32 0 SHEET 2 AB4 4 ASP D 20 ALA D 24 -1 N LEU D 22 O GLN D 29 SHEET 3 AB4 4 LEU D 3 ARG D 6 -1 N LEU D 3 O CYS D 23 SHEET 4 AB4 4 ASP D 42 ASP D 45 1 O LEU D 44 N LEU D 4 SHEET 1 AB5 7 SER D 16 ARG D 18 0 SHEET 2 AB5 7 THR D 9 VAL D 11 -1 N VAL D 10 O TYR D 17 SHEET 3 AB5 7 TYR D 50 PRO D 53 1 O LEU D 51 N VAL D 11 SHEET 4 AB5 7 LEU D 393 LEU D 404 -1 O TRP D 396 N TYR D 50 SHEET 5 AB5 7 ARG D 421 SER D 432 -1 O ILE D 431 N LEU D 393 SHEET 6 AB5 7 LYS D 435 ALA D 439 -1 O LEU D 437 N THR D 430 SHEET 7 AB5 7 ASP D 442 LEU D 443 -1 O ASP D 442 N ALA D 439 SHEET 1 AB6 8 GLY D 55 THR D 60 0 SHEET 2 AB6 8 THR D 87 VAL D 94 1 O SER D 89 N ASP D 57 SHEET 3 AB6 8 ASP D 119 ALA D 125 1 O GLY D 121 N ASP D 92 SHEET 4 AB6 8 SER D 148 PHE D 152 1 O SER D 148 N VAL D 124 SHEET 5 AB6 8 VAL D 179 HIS D 183 1 O THR D 181 N PHE D 149 SHEET 6 AB6 8 LEU D 235 LEU D 237 1 O TYR D 236 N PRO D 180 SHEET 7 AB6 8 VAL D 259 LEU D 264 1 O TYR D 260 N LEU D 235 SHEET 8 AB6 8 THR D 312 ALA D 314 1 O THR D 312 N VAL D 263 SHEET 1 AB7 2 PRO D 65 PHE D 66 0 SHEET 2 AB7 2 THR D 69 VAL D 70 -1 O THR D 69 N PHE D 66 LINK C PHE A 149 N KCX A 150 1555 1555 1.33 LINK C KCX A 150 N HIS A 151 1555 1555 1.34 LINK C PHE B 149 N KCX B 150 1555 1555 1.33 LINK C KCX B 150 N HIS B 151 1555 1555 1.33 LINK C PHE C 149 N KCX C 150 1555 1555 1.32 LINK C KCX C 150 N HIS C 151 1555 1555 1.33 LINK C PHE D 149 N KCX D 150 1555 1555 1.33 LINK C KCX D 150 N HIS D 151 1555 1555 1.33 LINK NE2 HIS A 59 ZN ZN A 502 1555 1555 2.17 LINK NE2 HIS A 61 ZN ZN A 502 1555 1555 2.09 LINK OQ1 KCX A 150 ZN ZN A 501 1555 1555 2.05 LINK OQ2 KCX A 150 ZN ZN A 502 1555 1555 1.98 LINK ND1 HIS A 183 ZN ZN A 501 1555 1555 2.32 LINK OD1 ASP A 316 ZN ZN A 502 1555 1555 2.23 LINK NE2 HIS B 59 ZN ZN B 502 1555 1555 2.15 LINK NE2 HIS B 61 ZN ZN B 502 1555 1555 2.11 LINK OQ2 KCX B 150 ZN ZN B 501 1555 1555 2.07 LINK OQ1 KCX B 150 ZN ZN B 502 1555 1555 2.01 LINK ND1 HIS B 183 ZN ZN B 501 1555 1555 2.23 LINK OD1 ASP B 316 ZN ZN B 502 1555 1555 2.29 LINK NE2 HIS C 59 ZN ZN C 502 1555 1555 2.13 LINK NE2 HIS C 61 ZN ZN C 502 1555 1555 2.06 LINK OQ1 KCX C 150 ZN ZN C 501 1555 1555 2.08 LINK OQ2 KCX C 150 ZN ZN C 502 1555 1555 2.05 LINK NE2 HIS C 239 ZN ZN C 501 1555 1555 2.25 LINK OD1 ASP C 316 ZN ZN C 502 1555 1555 2.34 LINK NE2 HIS D 59 ZN ZN D 501 1555 1555 2.12 LINK NE2 HIS D 61 ZN ZN D 501 1555 1555 2.02 LINK OQ1 KCX D 150 ZN ZN D 501 1555 1555 1.91 LINK OQ2 KCX D 150 ZN ZN D 502 1555 1555 2.00 LINK ND1 HIS D 183 ZN ZN D 502 1555 1555 2.40 LINK OD1 ASP D 316 ZN ZN D 501 1555 1555 2.25 LINK ZN ZN D 502 O HOH D 650 1555 1555 2.34 CISPEP 1 SER A 289 PRO A 290 0 1.77 CISPEP 2 PHE A 379 PRO A 380 0 -0.19 CISPEP 3 SER B 289 PRO B 290 0 0.51 CISPEP 4 PHE B 379 PRO B 380 0 5.91 CISPEP 5 SER C 289 PRO C 290 0 -1.66 CISPEP 6 PHE C 379 PRO C 380 0 4.42 CISPEP 7 SER D 289 PRO D 290 0 1.41 CISPEP 8 PHE D 379 PRO D 380 0 15.91 SITE 1 AC1 4 KCX A 150 HIS A 183 HIS A 239 ZN A 502 SITE 1 AC2 5 HIS A 59 HIS A 61 KCX A 150 ASP A 316 SITE 2 AC2 5 ZN A 501 SITE 1 AC3 4 KCX B 150 HIS B 183 HIS B 239 ZN B 502 SITE 1 AC4 5 HIS B 59 HIS B 61 KCX B 150 ASP B 316 SITE 2 AC4 5 ZN B 501 SITE 1 AC5 4 KCX C 150 HIS C 183 HIS C 239 ZN C 502 SITE 1 AC6 5 HIS C 59 HIS C 61 KCX C 150 ASP C 316 SITE 2 AC6 5 ZN C 501 SITE 1 AC7 5 HIS D 59 HIS D 61 KCX D 150 ASP D 316 SITE 2 AC7 5 ZN D 502 SITE 1 AC8 5 KCX D 150 HIS D 183 HIS D 239 ZN D 501 SITE 2 AC8 5 HOH D 650 CRYST1 108.912 155.699 235.572 90.00 90.00 90.00 C 2 2 21 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009182 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006423 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004245 0.00000