HEADER TRANSFERASE 16-OCT-17 5YKS TITLE CRYSTAL STRUCTURE OF SUCROSE NONFERMENTING-RELATED KINASE (SNRK) COMPND MOL_ID: 1; COMPND 2 MOLECULE: SNF-RELATED SERINE/THREONINE-PROTEIN KINASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: SNF1-RELATED KINASE; COMPND 5 EC: 2.7.11.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SNRK, KIAA0096, SNFRK; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PETDUET-1 KEYWDS PROTEIN KINASE, UBA DOMAIN, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.L.WANG,J.WANG,J.W.WU REVDAT 3 22-NOV-23 5YKS 1 REMARK REVDAT 2 03-JAN-18 5YKS 1 JRNL REVDAT 1 08-NOV-17 5YKS 0 JRNL AUTH Y.L.WANG,J.WANG,X.CHEN,Z.X.WANG,J.W.WU JRNL TITL CRYSTAL STRUCTURE OF THE KINASE AND UBA DOMAINS OF SNRK JRNL TITL 2 REVEALS A DISTINCT UBA BINDING MODE IN THE AMPK FAMILY. JRNL REF BIOCHEM. BIOPHYS. RES. V. 495 1 2018 JRNL REF 2 COMMUN. JRNL REFN ESSN 1090-2104 JRNL PMID 29061304 JRNL DOI 10.1016/J.BBRC.2017.10.105 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.30 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 3 NUMBER OF REFLECTIONS : 23579 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.224 REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.890 REMARK 3 FREE R VALUE TEST SET COUNT : 1153 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.2982 - 5.7870 0.98 3022 158 0.2052 0.2381 REMARK 3 2 5.7870 - 4.5990 1.00 2959 162 0.2027 0.2399 REMARK 3 3 4.5990 - 4.0193 1.00 2938 140 0.1888 0.2264 REMARK 3 4 4.0193 - 3.6526 0.94 2285 125 0.2400 0.2556 REMARK 3 5 3.6526 - 3.3912 0.90 2567 135 0.2835 0.3843 REMARK 3 6 3.3912 - 3.1915 1.00 2902 146 0.2653 0.3526 REMARK 3 7 3.1915 - 3.0319 1.00 2876 146 0.2626 0.3202 REMARK 3 8 3.0319 - 2.9000 1.00 2877 141 0.2611 0.3333 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.380 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.460 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 71.63 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4915 REMARK 3 ANGLE : 0.977 6684 REMARK 3 CHIRALITY : 0.053 791 REMARK 3 PLANARITY : 0.006 851 REMARK 3 DIHEDRAL : 14.883 2920 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5YKS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-OCT-17. REMARK 100 THE DEPOSITION ID IS D_1300005301. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-APR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23940 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 40.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 7.40 REMARK 200 R MERGE FOR SHELL (I) : 0.49700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.150 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3FE3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES, 0.07 M MAGNESIUM FORMATE, REMARK 280 4.5% D-SORBITOL, PH 7.2, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 45.96000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.32800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 49.53750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.32800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 45.96000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 49.53750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -20 REMARK 465 SER A -19 REMARK 465 SER A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 ALA A 2 REMARK 465 GLY A 3 REMARK 465 PHE A 4 REMARK 465 LYS A 5 REMARK 465 ARG A 6 REMARK 465 GLY A 7 REMARK 465 TYR A 8 REMARK 465 ASP A 9 REMARK 465 GLY A 10 REMARK 465 LYS A 11 REMARK 465 ILE A 12 REMARK 465 ALA A 13 REMARK 465 GLY A 14 REMARK 465 LEU A 15 REMARK 465 TYR A 16 REMARK 465 ASP A 17 REMARK 465 LEU A 18 REMARK 465 ASP A 19 REMARK 465 LYS A 20 REMARK 465 THR A 21 REMARK 465 LEU A 22 REMARK 465 GLY A 23 REMARK 465 ARG A 24 REMARK 465 SER A 162 REMARK 465 ASN A 163 REMARK 465 LYS A 164 REMARK 465 PHE A 165 REMARK 465 GLN A 166 REMARK 465 PRO A 167 REMARK 465 GLY A 168 REMARK 465 LYS A 169 REMARK 465 LYS A 170 REMARK 465 LEU A 171 REMARK 465 THR A 172 REMARK 465 THR A 173 REMARK 465 SER A 174 REMARK 465 CYS A 175 REMARK 465 GLY A 176 REMARK 465 PRO A 274 REMARK 465 SER A 275 REMARK 465 PRO A 276 REMARK 465 ALA A 277 REMARK 465 THR A 278 REMARK 465 LYS A 279 REMARK 465 TYR A 280 REMARK 465 ILE A 345 REMARK 465 GLN A 346 REMARK 465 THR A 347 REMARK 465 ARG A 348 REMARK 465 SER A 349 REMARK 465 ALA A 350 REMARK 465 SER A 351 REMARK 465 PRO A 352 REMARK 465 SER A 353 REMARK 465 ASN A 354 REMARK 465 ILE A 355 REMARK 465 LYS A 356 REMARK 465 GLY B -20 REMARK 465 SER B -19 REMARK 465 SER B -18 REMARK 465 HIS B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 ALA B 2 REMARK 465 GLY B 3 REMARK 465 PHE B 4 REMARK 465 LYS B 5 REMARK 465 ARG B 6 REMARK 465 GLY B 7 REMARK 465 TYR B 8 REMARK 465 ASP B 9 REMARK 465 GLY B 10 REMARK 465 LYS B 11 REMARK 465 ILE B 12 REMARK 465 ALA B 13 REMARK 465 GLY B 14 REMARK 465 LEU B 15 REMARK 465 TYR B 16 REMARK 465 ASP B 17 REMARK 465 LEU B 18 REMARK 465 ASP B 19 REMARK 465 LYS B 20 REMARK 465 THR B 21 REMARK 465 LEU B 22 REMARK 465 GLY B 23 REMARK 465 ARG B 24 REMARK 465 GLN B 166 REMARK 465 PRO B 167 REMARK 465 GLY B 168 REMARK 465 LYS B 169 REMARK 465 LYS B 170 REMARK 465 LEU B 171 REMARK 465 VAL B 272 REMARK 465 ASP B 273 REMARK 465 ILE B 345 REMARK 465 GLN B 346 REMARK 465 THR B 347 REMARK 465 ARG B 348 REMARK 465 SER B 349 REMARK 465 ALA B 350 REMARK 465 SER B 351 REMARK 465 PRO B 352 REMARK 465 SER B 353 REMARK 465 ASN B 354 REMARK 465 ILE B 355 REMARK 465 LYS B 356 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A -12 CG ND1 CD2 CE1 NE2 REMARK 470 SER A -11 OG REMARK 470 GLN A -10 CG CD OE1 NE2 REMARK 470 LYS A 51 CG CD CE NZ REMARK 470 LEU A 52 CG CD1 CD2 REMARK 470 LEU A 55 CG CD1 CD2 REMARK 470 THR A 57 OG1 CG2 REMARK 470 HIS A 59 CG ND1 CD2 CE1 NE2 REMARK 470 GLN A 85 CG CD OE1 NE2 REMARK 470 LYS A 150 CG CD CE NZ REMARK 470 LEU A 187 CG CD1 CD2 REMARK 470 ASP A 189 CG OD1 OD2 REMARK 470 GLU A 190 CG CD OE1 OE2 REMARK 470 TYR A 191 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASP A 192 CG OD1 OD2 REMARK 470 GLN A 216 CG CD OE1 NE2 REMARK 470 GLU A 217 CG CD OE1 OE2 REMARK 470 ASN A 219 CG OD1 ND2 REMARK 470 GLU A 222 CG CD OE1 OE2 REMARK 470 ASP A 229 CG OD1 OD2 REMARK 470 LYS A 231 CG CD CE NZ REMARK 470 LYS A 240 CG CD CE NZ REMARK 470 ARG A 252 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 255 CG CD CE NZ REMARK 470 ARG A 256 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 261 CG CD OE1 OE2 REMARK 470 GLN A 270 CG CD OE1 NE2 REMARK 470 ASP A 273 CG OD1 OD2 REMARK 470 ASN A 281 CG OD1 ND2 REMARK 470 ILE A 282 CG1 CG2 CD1 REMARK 470 LEU A 284 CG CD1 CD2 REMARK 470 SER A 286 OG REMARK 470 GLU A 293 CG CD OE1 OE2 REMARK 470 ASP A 306 CG OD1 OD2 REMARK 470 ASP A 309 CG OD1 OD2 REMARK 470 ASP A 311 CG OD1 OD2 REMARK 470 GLU A 315 CG CD OE1 OE2 REMARK 470 GLU A 318 CG CD OE1 OE2 REMARK 470 ARG A 321 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 334 CG CD OE1 OE2 REMARK 470 ARG A 335 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 338 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 339 CG CD OE1 OE2 REMARK 470 LYS A 340 CG CD CE NZ REMARK 470 GLN A 341 CG CD OE1 NE2 REMARK 470 GLU A 344 CG CD OE1 OE2 REMARK 470 SER B -11 OG REMARK 470 ASP B -9 CG OD1 OD2 REMARK 470 GLU B -7 CG CD OE1 OE2 REMARK 470 LYS B 51 CG CD CE NZ REMARK 470 LEU B 55 CG CD1 CD2 REMARK 470 GLN B 85 CG CD OE1 NE2 REMARK 470 LYS B 87 CG CD CE NZ REMARK 470 LYS B 150 CG CD CE NZ REMARK 470 PHE B 161 CG CD1 CD2 CE1 CE2 CZ REMARK 470 SER B 162 OG REMARK 470 ASN B 163 CG OD1 ND2 REMARK 470 LYS B 164 CG CD CE NZ REMARK 470 THR B 173 OG1 CG2 REMARK 470 CYS B 175 SG REMARK 470 GLU B 190 CG CD OE1 OE2 REMARK 470 GLU B 222 CG CD OE1 OE2 REMARK 470 LYS B 231 CG CD CE NZ REMARK 470 LYS B 240 CG CD CE NZ REMARK 470 LYS B 255 CG CD CE NZ REMARK 470 ARG B 256 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 261 CG CD OE1 OE2 REMARK 470 GLU B 264 CG CD OE1 OE2 REMARK 470 GLN B 270 CG CD OE1 NE2 REMARK 470 PRO B 274 CG CD REMARK 470 SER B 275 OG REMARK 470 PRO B 276 CG CD REMARK 470 THR B 278 OG1 CG2 REMARK 470 LYS B 279 CG CD CE NZ REMARK 470 LYS B 288 CG CD CE NZ REMARK 470 GLU B 292 CG CD OE1 OE2 REMARK 470 GLU B 293 CG CD OE1 OE2 REMARK 470 GLU B 318 CG CD OE1 OE2 REMARK 470 ARG B 335 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 338 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 339 CG CD OE1 OE2 REMARK 470 LYS B 340 CG CD CE NZ REMARK 470 GLU B 342 CG CD OE1 OE2 REMARK 470 LYS B 343 CG CD CE NZ REMARK 470 GLU B 344 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS B 66 CA - CB - SG ANGL. DEV. = 7.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 38 -163.56 -111.81 REMARK 500 ARG A 138 -17.52 74.34 REMARK 500 CYS A 230 44.50 79.20 REMARK 500 LEU A 250 70.30 -107.39 REMARK 500 ARG B 34 57.96 34.39 REMARK 500 THR B 38 -167.82 -119.75 REMARK 500 ASP B 53 -171.68 -68.44 REMARK 500 ARG B 138 -11.58 72.70 REMARK 500 PHE B 148 71.16 -109.73 REMARK 500 ASP B 158 60.95 34.31 REMARK 500 THR B 173 173.58 -58.14 REMARK 500 GLU B 190 151.37 -49.57 REMARK 500 LEU B 250 70.63 -110.91 REMARK 500 GLN B 270 -70.49 -61.65 REMARK 500 REMARK 500 REMARK: NULL DBREF 5YKS A 1 356 UNP Q9NRH2 SNRK_HUMAN 1 356 DBREF 5YKS B 1 356 UNP Q9NRH2 SNRK_HUMAN 1 356 SEQADV 5YKS GLY A -20 UNP Q9NRH2 EXPRESSION TAG SEQADV 5YKS SER A -19 UNP Q9NRH2 EXPRESSION TAG SEQADV 5YKS SER A -18 UNP Q9NRH2 EXPRESSION TAG SEQADV 5YKS HIS A -17 UNP Q9NRH2 EXPRESSION TAG SEQADV 5YKS HIS A -16 UNP Q9NRH2 EXPRESSION TAG SEQADV 5YKS HIS A -15 UNP Q9NRH2 EXPRESSION TAG SEQADV 5YKS HIS A -14 UNP Q9NRH2 EXPRESSION TAG SEQADV 5YKS HIS A -13 UNP Q9NRH2 EXPRESSION TAG SEQADV 5YKS HIS A -12 UNP Q9NRH2 EXPRESSION TAG SEQADV 5YKS SER A -11 UNP Q9NRH2 EXPRESSION TAG SEQADV 5YKS GLN A -10 UNP Q9NRH2 EXPRESSION TAG SEQADV 5YKS ASP A -9 UNP Q9NRH2 EXPRESSION TAG SEQADV 5YKS LEU A -8 UNP Q9NRH2 EXPRESSION TAG SEQADV 5YKS GLU A -7 UNP Q9NRH2 EXPRESSION TAG SEQADV 5YKS VAL A -6 UNP Q9NRH2 EXPRESSION TAG SEQADV 5YKS LEU A -5 UNP Q9NRH2 EXPRESSION TAG SEQADV 5YKS PHE A -4 UNP Q9NRH2 EXPRESSION TAG SEQADV 5YKS GLN A -3 UNP Q9NRH2 EXPRESSION TAG SEQADV 5YKS GLY A -2 UNP Q9NRH2 EXPRESSION TAG SEQADV 5YKS PRO A -1 UNP Q9NRH2 EXPRESSION TAG SEQADV 5YKS HIS A 0 UNP Q9NRH2 EXPRESSION TAG SEQADV 5YKS GLY B -20 UNP Q9NRH2 EXPRESSION TAG SEQADV 5YKS SER B -19 UNP Q9NRH2 EXPRESSION TAG SEQADV 5YKS SER B -18 UNP Q9NRH2 EXPRESSION TAG SEQADV 5YKS HIS B -17 UNP Q9NRH2 EXPRESSION TAG SEQADV 5YKS HIS B -16 UNP Q9NRH2 EXPRESSION TAG SEQADV 5YKS HIS B -15 UNP Q9NRH2 EXPRESSION TAG SEQADV 5YKS HIS B -14 UNP Q9NRH2 EXPRESSION TAG SEQADV 5YKS HIS B -13 UNP Q9NRH2 EXPRESSION TAG SEQADV 5YKS HIS B -12 UNP Q9NRH2 EXPRESSION TAG SEQADV 5YKS SER B -11 UNP Q9NRH2 EXPRESSION TAG SEQADV 5YKS GLN B -10 UNP Q9NRH2 EXPRESSION TAG SEQADV 5YKS ASP B -9 UNP Q9NRH2 EXPRESSION TAG SEQADV 5YKS LEU B -8 UNP Q9NRH2 EXPRESSION TAG SEQADV 5YKS GLU B -7 UNP Q9NRH2 EXPRESSION TAG SEQADV 5YKS VAL B -6 UNP Q9NRH2 EXPRESSION TAG SEQADV 5YKS LEU B -5 UNP Q9NRH2 EXPRESSION TAG SEQADV 5YKS PHE B -4 UNP Q9NRH2 EXPRESSION TAG SEQADV 5YKS GLN B -3 UNP Q9NRH2 EXPRESSION TAG SEQADV 5YKS GLY B -2 UNP Q9NRH2 EXPRESSION TAG SEQADV 5YKS PRO B -1 UNP Q9NRH2 EXPRESSION TAG SEQADV 5YKS HIS B 0 UNP Q9NRH2 EXPRESSION TAG SEQRES 1 A 377 GLY SER SER HIS HIS HIS HIS HIS HIS SER GLN ASP LEU SEQRES 2 A 377 GLU VAL LEU PHE GLN GLY PRO HIS MET ALA GLY PHE LYS SEQRES 3 A 377 ARG GLY TYR ASP GLY LYS ILE ALA GLY LEU TYR ASP LEU SEQRES 4 A 377 ASP LYS THR LEU GLY ARG GLY HIS PHE ALA VAL VAL LYS SEQRES 5 A 377 LEU ALA ARG HIS VAL PHE THR GLY GLU LYS VAL ALA VAL SEQRES 6 A 377 LYS VAL ILE ASP LYS THR LYS LEU ASP THR LEU ALA THR SEQRES 7 A 377 GLY HIS LEU PHE GLN GLU VAL ARG CYS MET LYS LEU VAL SEQRES 8 A 377 GLN HIS PRO ASN ILE VAL ARG LEU TYR GLU VAL ILE ASP SEQRES 9 A 377 THR GLN THR LYS LEU TYR LEU ILE LEU GLU LEU GLY ASP SEQRES 10 A 377 GLY GLY ASP MET PHE ASP TYR ILE MET LYS HIS GLU GLU SEQRES 11 A 377 GLY LEU ASN GLU ASP LEU ALA LYS LYS TYR PHE ALA GLN SEQRES 12 A 377 ILE VAL HIS ALA ILE SER TYR CYS HIS LYS LEU HIS VAL SEQRES 13 A 377 VAL HIS ARG ASP LEU LYS PRO GLU ASN VAL VAL PHE PHE SEQRES 14 A 377 GLU LYS GLN GLY LEU VAL LYS LEU THR ASP PHE GLY PHE SEQRES 15 A 377 SER ASN LYS PHE GLN PRO GLY LYS LYS LEU THR THR SER SEQRES 16 A 377 CYS GLY SER LEU ALA TYR SER ALA PRO GLU ILE LEU LEU SEQRES 17 A 377 GLY ASP GLU TYR ASP ALA PRO ALA VAL ASP ILE TRP SER SEQRES 18 A 377 LEU GLY VAL ILE LEU PHE MET LEU VAL CYS GLY GLN PRO SEQRES 19 A 377 PRO PHE GLN GLU ALA ASN ASP SER GLU THR LEU THR MET SEQRES 20 A 377 ILE MET ASP CYS LYS TYR THR VAL PRO SER HIS VAL SER SEQRES 21 A 377 LYS GLU CYS LYS ASP LEU ILE THR ARG MET LEU GLN ARG SEQRES 22 A 377 ASP PRO LYS ARG ARG ALA SER LEU GLU GLU ILE GLU ASN SEQRES 23 A 377 HIS PRO TRP LEU GLN GLY VAL ASP PRO SER PRO ALA THR SEQRES 24 A 377 LYS TYR ASN ILE PRO LEU VAL SER TYR LYS ASN LEU SER SEQRES 25 A 377 GLU GLU GLU HIS ASN SER ILE ILE GLN ARG MET VAL LEU SEQRES 26 A 377 GLY ASP ILE ALA ASP ARG ASP ALA ILE VAL GLU ALA LEU SEQRES 27 A 377 GLU THR ASN ARG TYR ASN HIS ILE THR ALA THR TYR PHE SEQRES 28 A 377 LEU LEU ALA GLU ARG ILE LEU ARG GLU LYS GLN GLU LYS SEQRES 29 A 377 GLU ILE GLN THR ARG SER ALA SER PRO SER ASN ILE LYS SEQRES 1 B 377 GLY SER SER HIS HIS HIS HIS HIS HIS SER GLN ASP LEU SEQRES 2 B 377 GLU VAL LEU PHE GLN GLY PRO HIS MET ALA GLY PHE LYS SEQRES 3 B 377 ARG GLY TYR ASP GLY LYS ILE ALA GLY LEU TYR ASP LEU SEQRES 4 B 377 ASP LYS THR LEU GLY ARG GLY HIS PHE ALA VAL VAL LYS SEQRES 5 B 377 LEU ALA ARG HIS VAL PHE THR GLY GLU LYS VAL ALA VAL SEQRES 6 B 377 LYS VAL ILE ASP LYS THR LYS LEU ASP THR LEU ALA THR SEQRES 7 B 377 GLY HIS LEU PHE GLN GLU VAL ARG CYS MET LYS LEU VAL SEQRES 8 B 377 GLN HIS PRO ASN ILE VAL ARG LEU TYR GLU VAL ILE ASP SEQRES 9 B 377 THR GLN THR LYS LEU TYR LEU ILE LEU GLU LEU GLY ASP SEQRES 10 B 377 GLY GLY ASP MET PHE ASP TYR ILE MET LYS HIS GLU GLU SEQRES 11 B 377 GLY LEU ASN GLU ASP LEU ALA LYS LYS TYR PHE ALA GLN SEQRES 12 B 377 ILE VAL HIS ALA ILE SER TYR CYS HIS LYS LEU HIS VAL SEQRES 13 B 377 VAL HIS ARG ASP LEU LYS PRO GLU ASN VAL VAL PHE PHE SEQRES 14 B 377 GLU LYS GLN GLY LEU VAL LYS LEU THR ASP PHE GLY PHE SEQRES 15 B 377 SER ASN LYS PHE GLN PRO GLY LYS LYS LEU THR THR SER SEQRES 16 B 377 CYS GLY SER LEU ALA TYR SER ALA PRO GLU ILE LEU LEU SEQRES 17 B 377 GLY ASP GLU TYR ASP ALA PRO ALA VAL ASP ILE TRP SER SEQRES 18 B 377 LEU GLY VAL ILE LEU PHE MET LEU VAL CYS GLY GLN PRO SEQRES 19 B 377 PRO PHE GLN GLU ALA ASN ASP SER GLU THR LEU THR MET SEQRES 20 B 377 ILE MET ASP CYS LYS TYR THR VAL PRO SER HIS VAL SER SEQRES 21 B 377 LYS GLU CYS LYS ASP LEU ILE THR ARG MET LEU GLN ARG SEQRES 22 B 377 ASP PRO LYS ARG ARG ALA SER LEU GLU GLU ILE GLU ASN SEQRES 23 B 377 HIS PRO TRP LEU GLN GLY VAL ASP PRO SER PRO ALA THR SEQRES 24 B 377 LYS TYR ASN ILE PRO LEU VAL SER TYR LYS ASN LEU SER SEQRES 25 B 377 GLU GLU GLU HIS ASN SER ILE ILE GLN ARG MET VAL LEU SEQRES 26 B 377 GLY ASP ILE ALA ASP ARG ASP ALA ILE VAL GLU ALA LEU SEQRES 27 B 377 GLU THR ASN ARG TYR ASN HIS ILE THR ALA THR TYR PHE SEQRES 28 B 377 LEU LEU ALA GLU ARG ILE LEU ARG GLU LYS GLN GLU LYS SEQRES 29 B 377 GLU ILE GLN THR ARG SER ALA SER PRO SER ASN ILE LYS HELIX 1 AA1 GLN A -10 GLY A -2 1 9 HELIX 2 AA2 ASP A 53 LYS A 68 1 16 HELIX 3 AA3 ASP A 99 LYS A 106 1 8 HELIX 4 AA4 ASN A 112 LEU A 133 1 22 HELIX 5 AA5 LYS A 141 GLU A 143 5 3 HELIX 6 AA6 ALA A 182 GLY A 188 1 7 HELIX 7 AA7 ASP A 192 GLY A 211 1 20 HELIX 8 AA8 ASN A 219 CYS A 230 1 12 HELIX 9 AA9 SER A 239 LEU A 250 1 12 HELIX 10 AB1 SER A 259 HIS A 266 1 8 HELIX 11 AB2 PRO A 267 GLN A 270 5 4 HELIX 12 AB3 PRO A 283 TYR A 287 5 5 HELIX 13 AB4 SER A 291 GLY A 305 1 15 HELIX 14 AB5 ASP A 309 ASN A 320 1 12 HELIX 15 AB6 ASN A 323 GLU A 344 1 22 HELIX 16 AB7 GLN B -10 GLY B -2 1 9 HELIX 17 AB8 ASP B 53 LYS B 68 1 16 HELIX 18 AB9 ASP B 99 HIS B 107 1 9 HELIX 19 AC1 ASN B 112 LEU B 133 1 22 HELIX 20 AC2 LYS B 141 GLU B 143 5 3 HELIX 21 AC3 THR B 173 LEU B 178 1 6 HELIX 22 AC4 ALA B 182 GLY B 188 1 7 HELIX 23 AC5 ASP B 192 GLY B 211 1 20 HELIX 24 AC6 ASN B 219 CYS B 230 1 12 HELIX 25 AC7 SER B 239 LEU B 250 1 12 HELIX 26 AC8 SER B 259 ASN B 265 1 7 HELIX 27 AC9 HIS B 266 GLY B 271 1 6 HELIX 28 AD1 PRO B 283 TYR B 287 5 5 HELIX 29 AD2 SER B 291 GLY B 305 1 15 HELIX 30 AD3 ASP B 309 ASN B 320 1 12 HELIX 31 AD4 ASN B 323 GLU B 344 1 22 SHEET 1 AA1 8 LEU A 78 ASP A 83 0 SHEET 2 AA1 8 LYS A 87 LEU A 92 -1 O ILE A 91 N TYR A 79 SHEET 3 AA1 8 VAL A 36 ASP A 48 -1 N ALA A 43 O LEU A 92 SHEET 4 AA1 8 HIS A 26 ALA A 33 -1 N VAL A 29 O VAL A 42 SHEET 5 AA1 8 HIS B 26 ALA B 33 -1 O HIS B 26 N LEU A 32 SHEET 6 AA1 8 VAL B 36 ASP B 48 -1 O VAL B 42 N VAL B 29 SHEET 7 AA1 8 LYS B 87 GLU B 93 -1 O LEU B 88 N ILE B 47 SHEET 8 AA1 8 LEU B 78 ASP B 83 -1 N ILE B 82 O TYR B 89 SHEET 1 AA2 2 VAL A 145 PHE A 148 0 SHEET 2 AA2 2 LEU A 153 LEU A 156 -1 O LEU A 153 N PHE A 148 SHEET 1 AA3 2 VAL B 145 PHE B 148 0 SHEET 2 AA3 2 LEU B 153 LEU B 156 -1 O LEU B 153 N PHE B 148 CRYST1 91.920 99.075 118.656 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010879 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010093 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008428 0.00000