data_5YKX # _entry.id 5YKX # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.398 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5YKX pdb_00005ykx 10.2210/pdb5ykx/pdb WWPDB D_1300005465 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2018-10-24 2 'Structure model' 1 1 2018-11-07 3 'Structure model' 1 2 2019-02-27 4 'Structure model' 1 3 2019-03-13 5 'Structure model' 1 4 2024-11-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Structure summary' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Database references' 7 5 'Structure model' 'Data collection' 8 5 'Structure model' 'Database references' 9 5 'Structure model' 'Derived calculations' 10 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' struct 2 3 'Structure model' citation 3 3 'Structure model' citation_author 4 4 'Structure model' citation 5 4 'Structure model' citation_author 6 5 'Structure model' chem_comp_atom 7 5 'Structure model' chem_comp_bond 8 5 'Structure model' database_2 9 5 'Structure model' pdbx_entry_details 10 5 'Structure model' pdbx_modification_feature 11 5 'Structure model' pdbx_struct_conn_angle 12 5 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_struct.title' 2 3 'Structure model' '_citation.country' 3 3 'Structure model' '_citation.journal_abbrev' 4 3 'Structure model' '_citation.journal_id_CSD' 5 3 'Structure model' '_citation.journal_id_ISSN' 6 3 'Structure model' '_citation.journal_volume' 7 3 'Structure model' '_citation.pdbx_database_id_DOI' 8 3 'Structure model' '_citation.title' 9 3 'Structure model' '_citation.year' 10 4 'Structure model' '_citation.page_first' 11 4 'Structure model' '_citation.page_last' 12 4 'Structure model' '_citation.pdbx_database_id_PubMed' 13 4 'Structure model' '_citation.title' 14 4 'Structure model' '_citation_author.identifier_ORCID' 15 5 'Structure model' '_database_2.pdbx_DOI' 16 5 'Structure model' '_database_2.pdbx_database_accession' 17 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 18 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 19 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 20 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 21 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 22 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 23 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 24 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 25 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 26 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 27 5 'Structure model' '_pdbx_struct_conn_angle.value' 28 5 'Structure model' '_struct_conn.conn_type_id' 29 5 'Structure model' '_struct_conn.id' 30 5 'Structure model' '_struct_conn.pdbx_dist_value' 31 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 32 5 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 33 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 34 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 35 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 36 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 37 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 38 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 39 5 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 40 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 41 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 42 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 43 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 44 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 45 5 'Structure model' '_struct_conn.ptnr2_label_seq_id' 46 5 'Structure model' '_struct_conn.ptnr2_symmetry' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5YKX _pdbx_database_status.recvd_initial_deposition_date 2017-10-16 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Chen, N.C.' 1 ? 'Yoshimura, M.' 2 ? 'Lin, C.C.' 3 ? 'Guan, H.H.' 4 ? 'Chuankhayan, P.' 5 ? 'Chen, C.J.' 6 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Commun Biol' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2399-3642 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 2 _citation.language ? _citation.page_first 72 _citation.page_last 72 _citation.title 'The atomic structures of shrimp nodaviruses reveal new dimeric spike structures and particle polymorphism.' _citation.year 2019 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s42003-019-0311-z _citation.pdbx_database_id_PubMed 30820467 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Chen, N.C.' 1 ? primary 'Yoshimura, M.' 2 0000-0002-7466-2192 primary 'Miyazaki, N.' 3 ? primary 'Guan, H.H.' 4 ? primary 'Chuankhayan, P.' 5 ? primary 'Lin, C.C.' 6 ? primary 'Chen, S.K.' 7 ? primary 'Lin, P.J.' 8 ? primary 'Huang, Y.C.' 9 ? primary 'Iwasaki, K.' 10 ? primary 'Nakagawa, A.' 11 0000-0002-1700-7861 primary 'Chan, S.I.' 12 ? primary 'Chen, C.J.' 13 0000-0002-5157-4288 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Capsid protein' 13880.379 2 ? ? ? ? 2 non-polymer syn 'CADMIUM ION' 112.411 3 ? ? ? ? 3 non-polymer syn '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' 238.305 1 ? ? ? ? 4 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 5 water nat water 18.015 308 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;PTPVEVSQLTYNADTIGNWVPPTELKQTYTQDITGLKPNSKFIIVPY(MSE)DRVSSEVLQKCTITCNEVDAVGSISYFD TSAIKCDGYISFQANSIGEATFTLVTDYQGAVDPKPYQYRIIRAIVGNN ; _entity_poly.pdbx_seq_one_letter_code_can ;PTPVEVSQLTYNADTIGNWVPPTELKQTYTQDITGLKPNSKFIIVPYMDRVSSEVLQKCTITCNEVDAVGSISYFDTSAI KCDGYISFQANSIGEATFTLVTDYQGAVDPKPYQYRIIRAIVGNN ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CADMIUM ION' CD 3 '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' EPE 4 'SULFATE ION' SO4 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 PRO n 1 2 THR n 1 3 PRO n 1 4 VAL n 1 5 GLU n 1 6 VAL n 1 7 SER n 1 8 GLN n 1 9 LEU n 1 10 THR n 1 11 TYR n 1 12 ASN n 1 13 ALA n 1 14 ASP n 1 15 THR n 1 16 ILE n 1 17 GLY n 1 18 ASN n 1 19 TRP n 1 20 VAL n 1 21 PRO n 1 22 PRO n 1 23 THR n 1 24 GLU n 1 25 LEU n 1 26 LYS n 1 27 GLN n 1 28 THR n 1 29 TYR n 1 30 THR n 1 31 GLN n 1 32 ASP n 1 33 ILE n 1 34 THR n 1 35 GLY n 1 36 LEU n 1 37 LYS n 1 38 PRO n 1 39 ASN n 1 40 SER n 1 41 LYS n 1 42 PHE n 1 43 ILE n 1 44 ILE n 1 45 VAL n 1 46 PRO n 1 47 TYR n 1 48 MSE n 1 49 ASP n 1 50 ARG n 1 51 VAL n 1 52 SER n 1 53 SER n 1 54 GLU n 1 55 VAL n 1 56 LEU n 1 57 GLN n 1 58 LYS n 1 59 CYS n 1 60 THR n 1 61 ILE n 1 62 THR n 1 63 CYS n 1 64 ASN n 1 65 GLU n 1 66 VAL n 1 67 ASP n 1 68 ALA n 1 69 VAL n 1 70 GLY n 1 71 SER n 1 72 ILE n 1 73 SER n 1 74 TYR n 1 75 PHE n 1 76 ASP n 1 77 THR n 1 78 SER n 1 79 ALA n 1 80 ILE n 1 81 LYS n 1 82 CYS n 1 83 ASP n 1 84 GLY n 1 85 TYR n 1 86 ILE n 1 87 SER n 1 88 PHE n 1 89 GLN n 1 90 ALA n 1 91 ASN n 1 92 SER n 1 93 ILE n 1 94 GLY n 1 95 GLU n 1 96 ALA n 1 97 THR n 1 98 PHE n 1 99 THR n 1 100 LEU n 1 101 VAL n 1 102 THR n 1 103 ASP n 1 104 TYR n 1 105 GLN n 1 106 GLY n 1 107 ALA n 1 108 VAL n 1 109 ASP n 1 110 PRO n 1 111 LYS n 1 112 PRO n 1 113 TYR n 1 114 GLN n 1 115 TYR n 1 116 ARG n 1 117 ILE n 1 118 ILE n 1 119 ARG n 1 120 ALA n 1 121 ILE n 1 122 VAL n 1 123 GLY n 1 124 ASN n 1 125 ASN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 125 _entity_src_gen.gene_src_common_name MrNV _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Macrobrachium rosenbergii nodavirus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 222557 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CD non-polymer . 'CADMIUM ION' ? 'Cd 2' 112.411 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EPE non-polymer . '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' HEPES 'C8 H18 N2 O4 S' 238.305 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 PRO 1 2 ? ? ? A . n A 1 2 THR 2 3 ? ? ? A . n A 1 3 PRO 3 4 ? ? ? A . n A 1 4 VAL 4 5 ? ? ? A . n A 1 5 GLU 5 6 ? ? ? A . n A 1 6 VAL 6 7 ? ? ? A . n A 1 7 SER 7 8 ? ? ? A . n A 1 8 GLN 8 9 9 GLN GLN A . n A 1 9 LEU 9 10 10 LEU LEU A . n A 1 10 THR 10 11 11 THR THR A . n A 1 11 TYR 11 12 12 TYR TYR A . n A 1 12 ASN 12 13 13 ASN ASN A . n A 1 13 ALA 13 14 14 ALA ALA A . n A 1 14 ASP 14 15 15 ASP ASP A . n A 1 15 THR 15 16 16 THR THR A . n A 1 16 ILE 16 17 17 ILE ILE A . n A 1 17 GLY 17 18 18 GLY GLY A . n A 1 18 ASN 18 19 19 ASN ASN A . n A 1 19 TRP 19 20 20 TRP TRP A . n A 1 20 VAL 20 21 21 VAL VAL A . n A 1 21 PRO 21 22 22 PRO PRO A . n A 1 22 PRO 22 23 23 PRO PRO A . n A 1 23 THR 23 24 24 THR THR A . n A 1 24 GLU 24 25 25 GLU GLU A . n A 1 25 LEU 25 26 26 LEU LEU A . n A 1 26 LYS 26 27 27 LYS LYS A . n A 1 27 GLN 27 28 28 GLN GLN A . n A 1 28 THR 28 29 29 THR THR A . n A 1 29 TYR 29 30 30 TYR TYR A . n A 1 30 THR 30 31 31 THR THR A . n A 1 31 GLN 31 32 32 GLN GLN A . n A 1 32 ASP 32 33 33 ASP ASP A . n A 1 33 ILE 33 34 34 ILE ILE A . n A 1 34 THR 34 35 35 THR THR A . n A 1 35 GLY 35 36 36 GLY GLY A . n A 1 36 LEU 36 37 37 LEU LEU A . n A 1 37 LYS 37 38 38 LYS LYS A . n A 1 38 PRO 38 39 39 PRO PRO A . n A 1 39 ASN 39 40 40 ASN ASN A . n A 1 40 SER 40 41 41 SER SER A . n A 1 41 LYS 41 42 42 LYS LYS A . n A 1 42 PHE 42 43 43 PHE PHE A . n A 1 43 ILE 43 44 44 ILE ILE A . n A 1 44 ILE 44 45 45 ILE ILE A . n A 1 45 VAL 45 46 46 VAL VAL A . n A 1 46 PRO 46 47 47 PRO PRO A . n A 1 47 TYR 47 48 48 TYR TYR A . n A 1 48 MSE 48 49 49 MSE MSE A . n A 1 49 ASP 49 50 50 ASP ASP A . n A 1 50 ARG 50 51 51 ARG ARG A . n A 1 51 VAL 51 52 52 VAL VAL A . n A 1 52 SER 52 53 53 SER SER A . n A 1 53 SER 53 54 54 SER SER A . n A 1 54 GLU 54 55 55 GLU GLU A . n A 1 55 VAL 55 56 56 VAL VAL A . n A 1 56 LEU 56 57 57 LEU LEU A . n A 1 57 GLN 57 58 58 GLN GLN A . n A 1 58 LYS 58 59 59 LYS LYS A . n A 1 59 CYS 59 60 60 CYS CYS A . n A 1 60 THR 60 61 61 THR THR A . n A 1 61 ILE 61 62 62 ILE ILE A . n A 1 62 THR 62 63 63 THR THR A . n A 1 63 CYS 63 64 64 CYS CYS A . n A 1 64 ASN 64 65 65 ASN ASN A . n A 1 65 GLU 65 66 66 GLU GLU A . n A 1 66 VAL 66 67 67 VAL VAL A . n A 1 67 ASP 67 68 68 ASP ASP A . n A 1 68 ALA 68 69 69 ALA ALA A . n A 1 69 VAL 69 70 70 VAL VAL A . n A 1 70 GLY 70 71 71 GLY GLY A . n A 1 71 SER 71 72 72 SER SER A . n A 1 72 ILE 72 73 73 ILE ILE A . n A 1 73 SER 73 74 74 SER SER A . n A 1 74 TYR 74 75 75 TYR TYR A . n A 1 75 PHE 75 76 76 PHE PHE A . n A 1 76 ASP 76 77 77 ASP ASP A . n A 1 77 THR 77 78 78 THR THR A . n A 1 78 SER 78 79 79 SER SER A . n A 1 79 ALA 79 80 80 ALA ALA A . n A 1 80 ILE 80 81 81 ILE ILE A . n A 1 81 LYS 81 82 82 LYS LYS A . n A 1 82 CYS 82 83 83 CYS CYS A . n A 1 83 ASP 83 84 84 ASP ASP A . n A 1 84 GLY 84 85 85 GLY GLY A . n A 1 85 TYR 85 86 86 TYR TYR A . n A 1 86 ILE 86 87 87 ILE ILE A . n A 1 87 SER 87 88 88 SER SER A . n A 1 88 PHE 88 89 89 PHE PHE A . n A 1 89 GLN 89 90 90 GLN GLN A . n A 1 90 ALA 90 91 91 ALA ALA A . n A 1 91 ASN 91 92 92 ASN ASN A . n A 1 92 SER 92 93 93 SER SER A . n A 1 93 ILE 93 94 94 ILE ILE A . n A 1 94 GLY 94 95 95 GLY GLY A . n A 1 95 GLU 95 96 96 GLU GLU A . n A 1 96 ALA 96 97 97 ALA ALA A . n A 1 97 THR 97 98 98 THR THR A . n A 1 98 PHE 98 99 99 PHE PHE A . n A 1 99 THR 99 100 100 THR THR A . n A 1 100 LEU 100 101 101 LEU LEU A . n A 1 101 VAL 101 102 102 VAL VAL A . n A 1 102 THR 102 103 103 THR THR A . n A 1 103 ASP 103 104 104 ASP ASP A . n A 1 104 TYR 104 105 105 TYR TYR A . n A 1 105 GLN 105 106 106 GLN GLN A . n A 1 106 GLY 106 107 107 GLY GLY A . n A 1 107 ALA 107 108 108 ALA ALA A . n A 1 108 VAL 108 109 109 VAL VAL A . n A 1 109 ASP 109 110 110 ASP ASP A . n A 1 110 PRO 110 111 111 PRO PRO A . n A 1 111 LYS 111 112 112 LYS LYS A . n A 1 112 PRO 112 113 113 PRO PRO A . n A 1 113 TYR 113 114 114 TYR TYR A . n A 1 114 GLN 114 115 115 GLN GLN A . n A 1 115 TYR 115 116 116 TYR TYR A . n A 1 116 ARG 116 117 117 ARG ARG A . n A 1 117 ILE 117 118 118 ILE ILE A . n A 1 118 ILE 118 119 119 ILE ILE A . n A 1 119 ARG 119 120 120 ARG ARG A . n A 1 120 ALA 120 121 121 ALA ALA A . n A 1 121 ILE 121 122 122 ILE ILE A . n A 1 122 VAL 122 123 123 VAL VAL A . n A 1 123 GLY 123 124 124 GLY GLY A . n A 1 124 ASN 124 125 125 ASN ASN A . n A 1 125 ASN 125 126 126 ASN ASN A . n B 1 1 PRO 1 2 ? ? ? B . n B 1 2 THR 2 3 ? ? ? B . n B 1 3 PRO 3 4 4 PRO PRO B . n B 1 4 VAL 4 5 5 VAL VAL B . n B 1 5 GLU 5 6 6 GLU GLU B . n B 1 6 VAL 6 7 7 VAL VAL B . n B 1 7 SER 7 8 8 SER SER B . n B 1 8 GLN 8 9 9 GLN GLN B . n B 1 9 LEU 9 10 10 LEU LEU B . n B 1 10 THR 10 11 11 THR THR B . n B 1 11 TYR 11 12 12 TYR TYR B . n B 1 12 ASN 12 13 13 ASN ASN B . n B 1 13 ALA 13 14 14 ALA ALA B . n B 1 14 ASP 14 15 15 ASP ASP B . n B 1 15 THR 15 16 16 THR THR B . n B 1 16 ILE 16 17 17 ILE ILE B . n B 1 17 GLY 17 18 18 GLY GLY B . n B 1 18 ASN 18 19 19 ASN ASN B . n B 1 19 TRP 19 20 20 TRP TRP B . n B 1 20 VAL 20 21 21 VAL VAL B . n B 1 21 PRO 21 22 22 PRO PRO B . n B 1 22 PRO 22 23 23 PRO PRO B . n B 1 23 THR 23 24 24 THR THR B . n B 1 24 GLU 24 25 25 GLU GLU B . n B 1 25 LEU 25 26 26 LEU LEU B . n B 1 26 LYS 26 27 27 LYS LYS B . n B 1 27 GLN 27 28 28 GLN GLN B . n B 1 28 THR 28 29 29 THR THR B . n B 1 29 TYR 29 30 30 TYR TYR B . n B 1 30 THR 30 31 31 THR THR B . n B 1 31 GLN 31 32 32 GLN GLN B . n B 1 32 ASP 32 33 33 ASP ASP B . n B 1 33 ILE 33 34 34 ILE ILE B . n B 1 34 THR 34 35 35 THR THR B . n B 1 35 GLY 35 36 36 GLY GLY B . n B 1 36 LEU 36 37 37 LEU LEU B . n B 1 37 LYS 37 38 38 LYS LYS B . n B 1 38 PRO 38 39 39 PRO PRO B . n B 1 39 ASN 39 40 40 ASN ASN B . n B 1 40 SER 40 41 41 SER SER B . n B 1 41 LYS 41 42 42 LYS LYS B . n B 1 42 PHE 42 43 43 PHE PHE B . n B 1 43 ILE 43 44 44 ILE ILE B . n B 1 44 ILE 44 45 45 ILE ILE B . n B 1 45 VAL 45 46 46 VAL VAL B . n B 1 46 PRO 46 47 47 PRO PRO B . n B 1 47 TYR 47 48 48 TYR TYR B . n B 1 48 MSE 48 49 49 MSE MSE B . n B 1 49 ASP 49 50 50 ASP ASP B . n B 1 50 ARG 50 51 51 ARG ARG B . n B 1 51 VAL 51 52 52 VAL VAL B . n B 1 52 SER 52 53 53 SER SER B . n B 1 53 SER 53 54 54 SER SER B . n B 1 54 GLU 54 55 55 GLU GLU B . n B 1 55 VAL 55 56 56 VAL VAL B . n B 1 56 LEU 56 57 57 LEU LEU B . n B 1 57 GLN 57 58 58 GLN GLN B . n B 1 58 LYS 58 59 59 LYS LYS B . n B 1 59 CYS 59 60 60 CYS CYS B . n B 1 60 THR 60 61 61 THR THR B . n B 1 61 ILE 61 62 62 ILE ILE B . n B 1 62 THR 62 63 63 THR THR B . n B 1 63 CYS 63 64 64 CYS CYS B . n B 1 64 ASN 64 65 65 ASN ASN B . n B 1 65 GLU 65 66 66 GLU GLU B . n B 1 66 VAL 66 67 67 VAL VAL B . n B 1 67 ASP 67 68 68 ASP ASP B . n B 1 68 ALA 68 69 69 ALA ALA B . n B 1 69 VAL 69 70 70 VAL VAL B . n B 1 70 GLY 70 71 71 GLY GLY B . n B 1 71 SER 71 72 72 SER SER B . n B 1 72 ILE 72 73 73 ILE ILE B . n B 1 73 SER 73 74 74 SER SER B . n B 1 74 TYR 74 75 75 TYR TYR B . n B 1 75 PHE 75 76 76 PHE PHE B . n B 1 76 ASP 76 77 77 ASP ASP B . n B 1 77 THR 77 78 78 THR THR B . n B 1 78 SER 78 79 79 SER SER B . n B 1 79 ALA 79 80 80 ALA ALA B . n B 1 80 ILE 80 81 81 ILE ILE B . n B 1 81 LYS 81 82 82 LYS LYS B . n B 1 82 CYS 82 83 83 CYS CYS B . n B 1 83 ASP 83 84 84 ASP ASP B . n B 1 84 GLY 84 85 85 GLY GLY B . n B 1 85 TYR 85 86 86 TYR TYR B . n B 1 86 ILE 86 87 87 ILE ILE B . n B 1 87 SER 87 88 88 SER SER B . n B 1 88 PHE 88 89 89 PHE PHE B . n B 1 89 GLN 89 90 90 GLN GLN B . n B 1 90 ALA 90 91 91 ALA ALA B . n B 1 91 ASN 91 92 92 ASN ASN B . n B 1 92 SER 92 93 93 SER SER B . n B 1 93 ILE 93 94 94 ILE ILE B . n B 1 94 GLY 94 95 95 GLY GLY B . n B 1 95 GLU 95 96 96 GLU GLU B . n B 1 96 ALA 96 97 97 ALA ALA B . n B 1 97 THR 97 98 98 THR THR B . n B 1 98 PHE 98 99 99 PHE PHE B . n B 1 99 THR 99 100 100 THR THR B . n B 1 100 LEU 100 101 101 LEU LEU B . n B 1 101 VAL 101 102 102 VAL VAL B . n B 1 102 THR 102 103 103 THR THR B . n B 1 103 ASP 103 104 104 ASP ASP B . n B 1 104 TYR 104 105 105 TYR TYR B . n B 1 105 GLN 105 106 106 GLN GLN B . n B 1 106 GLY 106 107 107 GLY GLY B . n B 1 107 ALA 107 108 108 ALA ALA B . n B 1 108 VAL 108 109 109 VAL VAL B . n B 1 109 ASP 109 110 110 ASP ASP B . n B 1 110 PRO 110 111 111 PRO PRO B . n B 1 111 LYS 111 112 112 LYS LYS B . n B 1 112 PRO 112 113 113 PRO PRO B . n B 1 113 TYR 113 114 114 TYR TYR B . n B 1 114 GLN 114 115 115 GLN GLN B . n B 1 115 TYR 115 116 116 TYR TYR B . n B 1 116 ARG 116 117 117 ARG ARG B . n B 1 117 ILE 117 118 118 ILE ILE B . n B 1 118 ILE 118 119 119 ILE ILE B . n B 1 119 ARG 119 120 120 ARG ARG B . n B 1 120 ALA 120 121 121 ALA ALA B . n B 1 121 ILE 121 122 122 ILE ILE B . n B 1 122 VAL 122 123 123 VAL VAL B . n B 1 123 GLY 123 124 124 GLY GLY B . n B 1 124 ASN 124 125 125 ASN ASN B . n B 1 125 ASN 125 126 126 ASN ASN B . n # loop_ _pdbx_entity_instance_feature.ordinal _pdbx_entity_instance_feature.comp_id _pdbx_entity_instance_feature.asym_id _pdbx_entity_instance_feature.seq_num _pdbx_entity_instance_feature.auth_comp_id _pdbx_entity_instance_feature.auth_asym_id _pdbx_entity_instance_feature.auth_seq_num _pdbx_entity_instance_feature.feature_type _pdbx_entity_instance_feature.details 1 CD ? ? CD ? ? 'SUBJECT OF INVESTIGATION' ? 2 EPE ? ? EPE ? ? 'SUBJECT OF INVESTIGATION' ? 3 MSE ? ? MSE ? ? 'SUBJECT OF INVESTIGATION' ? 4 SO4 ? ? SO4 ? ? 'SUBJECT OF INVESTIGATION' ? # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CD 1 201 3 CD CD A . D 2 CD 1 201 1 CD CD B . E 2 CD 1 202 2 CD CD B . F 3 EPE 1 203 4 EPE EPE B . G 4 SO4 1 204 5 SO4 SO4 B . H 5 HOH 1 301 250 HOH HOH A . H 5 HOH 2 302 249 HOH HOH A . H 5 HOH 3 303 3 HOH HOH A . H 5 HOH 4 304 283 HOH HOH A . H 5 HOH 5 305 241 HOH HOH A . H 5 HOH 6 306 260 HOH HOH A . H 5 HOH 7 307 261 HOH HOH A . H 5 HOH 8 308 266 HOH HOH A . H 5 HOH 9 309 86 HOH HOH A . H 5 HOH 10 310 156 HOH HOH A . H 5 HOH 11 311 10 HOH HOH A . H 5 HOH 12 312 265 HOH HOH A . H 5 HOH 13 313 112 HOH HOH A . H 5 HOH 14 314 257 HOH HOH A . H 5 HOH 15 315 145 HOH HOH A . H 5 HOH 16 316 254 HOH HOH A . H 5 HOH 17 317 287 HOH HOH A . H 5 HOH 18 318 146 HOH HOH A . H 5 HOH 19 319 271 HOH HOH A . H 5 HOH 20 320 214 HOH HOH A . H 5 HOH 21 321 208 HOH HOH A . H 5 HOH 22 322 252 HOH HOH A . H 5 HOH 23 323 44 HOH HOH A . H 5 HOH 24 324 70 HOH HOH A . H 5 HOH 25 325 106 HOH HOH A . H 5 HOH 26 326 138 HOH HOH A . H 5 HOH 27 327 96 HOH HOH A . H 5 HOH 28 328 162 HOH HOH A . H 5 HOH 29 329 185 HOH HOH A . H 5 HOH 30 330 113 HOH HOH A . H 5 HOH 31 331 234 HOH HOH A . H 5 HOH 32 332 222 HOH HOH A . H 5 HOH 33 333 151 HOH HOH A . H 5 HOH 34 334 288 HOH HOH A . H 5 HOH 35 335 23 HOH HOH A . H 5 HOH 36 336 182 HOH HOH A . H 5 HOH 37 337 147 HOH HOH A . H 5 HOH 38 338 74 HOH HOH A . H 5 HOH 39 339 46 HOH HOH A . H 5 HOH 40 340 52 HOH HOH A . H 5 HOH 41 341 33 HOH HOH A . H 5 HOH 42 342 221 HOH HOH A . H 5 HOH 43 343 56 HOH HOH A . H 5 HOH 44 344 267 HOH HOH A . H 5 HOH 45 345 199 HOH HOH A . H 5 HOH 46 346 6 HOH HOH A . H 5 HOH 47 347 57 HOH HOH A . H 5 HOH 48 348 157 HOH HOH A . H 5 HOH 49 349 104 HOH HOH A . H 5 HOH 50 350 17 HOH HOH A . H 5 HOH 51 351 118 HOH HOH A . H 5 HOH 52 352 262 HOH HOH A . H 5 HOH 53 353 51 HOH HOH A . H 5 HOH 54 354 4 HOH HOH A . H 5 HOH 55 355 251 HOH HOH A . H 5 HOH 56 356 84 HOH HOH A . H 5 HOH 57 357 31 HOH HOH A . H 5 HOH 58 358 78 HOH HOH A . H 5 HOH 59 359 132 HOH HOH A . H 5 HOH 60 360 14 HOH HOH A . H 5 HOH 61 361 58 HOH HOH A . H 5 HOH 62 362 167 HOH HOH A . H 5 HOH 63 363 235 HOH HOH A . H 5 HOH 64 364 192 HOH HOH A . H 5 HOH 65 365 38 HOH HOH A . H 5 HOH 66 366 20 HOH HOH A . H 5 HOH 67 367 27 HOH HOH A . H 5 HOH 68 368 211 HOH HOH A . H 5 HOH 69 369 89 HOH HOH A . H 5 HOH 70 370 161 HOH HOH A . H 5 HOH 71 371 64 HOH HOH A . H 5 HOH 72 372 37 HOH HOH A . H 5 HOH 73 373 226 HOH HOH A . H 5 HOH 74 374 174 HOH HOH A . H 5 HOH 75 375 209 HOH HOH A . H 5 HOH 76 376 9 HOH HOH A . H 5 HOH 77 377 12 HOH HOH A . H 5 HOH 78 378 153 HOH HOH A . H 5 HOH 79 379 8 HOH HOH A . H 5 HOH 80 380 135 HOH HOH A . H 5 HOH 81 381 119 HOH HOH A . H 5 HOH 82 382 230 HOH HOH A . H 5 HOH 83 383 47 HOH HOH A . H 5 HOH 84 384 129 HOH HOH A . H 5 HOH 85 385 111 HOH HOH A . H 5 HOH 86 386 85 HOH HOH A . H 5 HOH 87 387 13 HOH HOH A . H 5 HOH 88 388 82 HOH HOH A . H 5 HOH 89 389 233 HOH HOH A . H 5 HOH 90 390 236 HOH HOH A . H 5 HOH 91 391 217 HOH HOH A . H 5 HOH 92 392 35 HOH HOH A . H 5 HOH 93 393 79 HOH HOH A . H 5 HOH 94 394 200 HOH HOH A . H 5 HOH 95 395 120 HOH HOH A . H 5 HOH 96 396 34 HOH HOH A . H 5 HOH 97 397 194 HOH HOH A . H 5 HOH 98 398 88 HOH HOH A . H 5 HOH 99 399 173 HOH HOH A . H 5 HOH 100 400 98 HOH HOH A . H 5 HOH 101 401 253 HOH HOH A . H 5 HOH 102 402 54 HOH HOH A . H 5 HOH 103 403 149 HOH HOH A . H 5 HOH 104 404 186 HOH HOH A . H 5 HOH 105 405 30 HOH HOH A . H 5 HOH 106 406 143 HOH HOH A . H 5 HOH 107 407 126 HOH HOH A . H 5 HOH 108 408 36 HOH HOH A . H 5 HOH 109 409 114 HOH HOH A . H 5 HOH 110 410 61 HOH HOH A . H 5 HOH 111 411 65 HOH HOH A . H 5 HOH 112 412 123 HOH HOH A . H 5 HOH 113 413 40 HOH HOH A . H 5 HOH 114 414 202 HOH HOH A . H 5 HOH 115 415 259 HOH HOH A . H 5 HOH 116 416 228 HOH HOH A . H 5 HOH 117 417 127 HOH HOH A . H 5 HOH 118 418 181 HOH HOH A . H 5 HOH 119 419 155 HOH HOH A . H 5 HOH 120 420 196 HOH HOH A . H 5 HOH 121 421 148 HOH HOH A . H 5 HOH 122 422 213 HOH HOH A . H 5 HOH 123 423 191 HOH HOH A . H 5 HOH 124 424 144 HOH HOH A . H 5 HOH 125 425 177 HOH HOH A . H 5 HOH 126 426 77 HOH HOH A . H 5 HOH 127 427 279 HOH HOH A . H 5 HOH 128 428 215 HOH HOH A . H 5 HOH 129 429 197 HOH HOH A . H 5 HOH 130 430 269 HOH HOH A . H 5 HOH 131 431 97 HOH HOH A . H 5 HOH 132 432 291 HOH HOH A . H 5 HOH 133 433 297 HOH HOH A . H 5 HOH 134 434 270 HOH HOH A . H 5 HOH 135 435 63 HOH HOH A . H 5 HOH 136 436 256 HOH HOH A . H 5 HOH 137 437 90 HOH HOH A . H 5 HOH 138 438 93 HOH HOH A . H 5 HOH 139 439 274 HOH HOH A . H 5 HOH 140 440 292 HOH HOH A . H 5 HOH 141 441 62 HOH HOH A . H 5 HOH 142 442 223 HOH HOH A . H 5 HOH 143 443 172 HOH HOH A . H 5 HOH 144 444 71 HOH HOH A . H 5 HOH 145 445 176 HOH HOH A . H 5 HOH 146 446 294 HOH HOH A . H 5 HOH 147 447 179 HOH HOH A . H 5 HOH 148 448 302 HOH HOH A . H 5 HOH 149 449 134 HOH HOH A . H 5 HOH 150 450 239 HOH HOH A . H 5 HOH 151 451 277 HOH HOH A . H 5 HOH 152 452 295 HOH HOH A . H 5 HOH 153 453 140 HOH HOH A . H 5 HOH 154 454 268 HOH HOH A . H 5 HOH 155 455 125 HOH HOH A . H 5 HOH 156 456 166 HOH HOH A . H 5 HOH 157 457 201 HOH HOH A . H 5 HOH 158 458 130 HOH HOH A . H 5 HOH 159 459 245 HOH HOH A . H 5 HOH 160 460 108 HOH HOH A . H 5 HOH 161 461 289 HOH HOH A . H 5 HOH 162 462 1 HOH HOH A . H 5 HOH 163 463 299 HOH HOH A . H 5 HOH 164 464 142 HOH HOH A . I 5 HOH 1 301 278 HOH HOH B . I 5 HOH 2 302 42 HOH HOH B . I 5 HOH 3 303 306 HOH HOH B . I 5 HOH 4 304 170 HOH HOH B . I 5 HOH 5 305 26 HOH HOH B . I 5 HOH 6 306 189 HOH HOH B . I 5 HOH 7 307 16 HOH HOH B . I 5 HOH 8 308 80 HOH HOH B . I 5 HOH 9 309 83 HOH HOH B . I 5 HOH 10 310 243 HOH HOH B . I 5 HOH 11 311 218 HOH HOH B . I 5 HOH 12 312 25 HOH HOH B . I 5 HOH 13 313 282 HOH HOH B . I 5 HOH 14 314 45 HOH HOH B . I 5 HOH 15 315 247 HOH HOH B . I 5 HOH 16 316 281 HOH HOH B . I 5 HOH 17 317 160 HOH HOH B . I 5 HOH 18 318 198 HOH HOH B . I 5 HOH 19 319 139 HOH HOH B . I 5 HOH 20 320 212 HOH HOH B . I 5 HOH 21 321 21 HOH HOH B . I 5 HOH 22 322 94 HOH HOH B . I 5 HOH 23 323 68 HOH HOH B . I 5 HOH 24 324 66 HOH HOH B . I 5 HOH 25 325 272 HOH HOH B . I 5 HOH 26 326 133 HOH HOH B . I 5 HOH 27 327 255 HOH HOH B . I 5 HOH 28 328 18 HOH HOH B . I 5 HOH 29 329 75 HOH HOH B . I 5 HOH 30 330 248 HOH HOH B . I 5 HOH 31 331 193 HOH HOH B . I 5 HOH 32 332 152 HOH HOH B . I 5 HOH 33 333 32 HOH HOH B . I 5 HOH 34 334 121 HOH HOH B . I 5 HOH 35 335 285 HOH HOH B . I 5 HOH 36 336 169 HOH HOH B . I 5 HOH 37 337 190 HOH HOH B . I 5 HOH 38 338 41 HOH HOH B . I 5 HOH 39 339 184 HOH HOH B . I 5 HOH 40 340 69 HOH HOH B . I 5 HOH 41 341 244 HOH HOH B . I 5 HOH 42 342 76 HOH HOH B . I 5 HOH 43 343 72 HOH HOH B . I 5 HOH 44 344 307 HOH HOH B . I 5 HOH 45 345 258 HOH HOH B . I 5 HOH 46 346 207 HOH HOH B . I 5 HOH 47 347 87 HOH HOH B . I 5 HOH 48 348 24 HOH HOH B . I 5 HOH 49 349 195 HOH HOH B . I 5 HOH 50 350 273 HOH HOH B . I 5 HOH 51 351 2 HOH HOH B . I 5 HOH 52 352 49 HOH HOH B . I 5 HOH 53 353 124 HOH HOH B . I 5 HOH 54 354 100 HOH HOH B . I 5 HOH 55 355 216 HOH HOH B . I 5 HOH 56 356 231 HOH HOH B . I 5 HOH 57 357 180 HOH HOH B . I 5 HOH 58 358 131 HOH HOH B . I 5 HOH 59 359 225 HOH HOH B . I 5 HOH 60 360 15 HOH HOH B . I 5 HOH 61 361 171 HOH HOH B . I 5 HOH 62 362 39 HOH HOH B . I 5 HOH 63 363 220 HOH HOH B . I 5 HOH 64 364 22 HOH HOH B . I 5 HOH 65 365 116 HOH HOH B . I 5 HOH 66 366 286 HOH HOH B . I 5 HOH 67 367 53 HOH HOH B . I 5 HOH 68 368 204 HOH HOH B . I 5 HOH 69 369 105 HOH HOH B . I 5 HOH 70 370 154 HOH HOH B . I 5 HOH 71 371 117 HOH HOH B . I 5 HOH 72 372 28 HOH HOH B . I 5 HOH 73 373 7 HOH HOH B . I 5 HOH 74 374 115 HOH HOH B . I 5 HOH 75 375 5 HOH HOH B . I 5 HOH 76 376 276 HOH HOH B . I 5 HOH 77 377 240 HOH HOH B . I 5 HOH 78 378 229 HOH HOH B . I 5 HOH 79 379 99 HOH HOH B . I 5 HOH 80 380 19 HOH HOH B . I 5 HOH 81 381 73 HOH HOH B . I 5 HOH 82 382 308 HOH HOH B . I 5 HOH 83 383 92 HOH HOH B . I 5 HOH 84 384 43 HOH HOH B . I 5 HOH 85 385 206 HOH HOH B . I 5 HOH 86 386 91 HOH HOH B . I 5 HOH 87 387 164 HOH HOH B . I 5 HOH 88 388 95 HOH HOH B . I 5 HOH 89 389 48 HOH HOH B . I 5 HOH 90 390 136 HOH HOH B . I 5 HOH 91 391 109 HOH HOH B . I 5 HOH 92 392 188 HOH HOH B . I 5 HOH 93 393 60 HOH HOH B . I 5 HOH 94 394 102 HOH HOH B . I 5 HOH 95 395 275 HOH HOH B . I 5 HOH 96 396 163 HOH HOH B . I 5 HOH 97 397 246 HOH HOH B . I 5 HOH 98 398 11 HOH HOH B . I 5 HOH 99 399 29 HOH HOH B . I 5 HOH 100 400 103 HOH HOH B . I 5 HOH 101 401 107 HOH HOH B . I 5 HOH 102 402 122 HOH HOH B . I 5 HOH 103 403 205 HOH HOH B . I 5 HOH 104 404 219 HOH HOH B . I 5 HOH 105 405 159 HOH HOH B . I 5 HOH 106 406 210 HOH HOH B . I 5 HOH 107 407 110 HOH HOH B . I 5 HOH 108 408 50 HOH HOH B . I 5 HOH 109 409 59 HOH HOH B . I 5 HOH 110 410 232 HOH HOH B . I 5 HOH 111 411 150 HOH HOH B . I 5 HOH 112 412 183 HOH HOH B . I 5 HOH 113 413 128 HOH HOH B . I 5 HOH 114 414 301 HOH HOH B . I 5 HOH 115 415 227 HOH HOH B . I 5 HOH 116 416 55 HOH HOH B . I 5 HOH 117 417 67 HOH HOH B . I 5 HOH 118 418 242 HOH HOH B . I 5 HOH 119 419 141 HOH HOH B . I 5 HOH 120 420 224 HOH HOH B . I 5 HOH 121 421 137 HOH HOH B . I 5 HOH 122 422 168 HOH HOH B . I 5 HOH 123 423 203 HOH HOH B . I 5 HOH 124 424 165 HOH HOH B . I 5 HOH 125 425 303 HOH HOH B . I 5 HOH 126 426 284 HOH HOH B . I 5 HOH 127 427 264 HOH HOH B . I 5 HOH 128 428 81 HOH HOH B . I 5 HOH 129 429 178 HOH HOH B . I 5 HOH 130 430 237 HOH HOH B . I 5 HOH 131 431 187 HOH HOH B . I 5 HOH 132 432 305 HOH HOH B . I 5 HOH 133 433 298 HOH HOH B . I 5 HOH 134 434 101 HOH HOH B . I 5 HOH 135 435 296 HOH HOH B . I 5 HOH 136 436 263 HOH HOH B . I 5 HOH 137 437 293 HOH HOH B . I 5 HOH 138 438 280 HOH HOH B . I 5 HOH 139 439 158 HOH HOH B . I 5 HOH 140 440 290 HOH HOH B . I 5 HOH 141 441 175 HOH HOH B . I 5 HOH 142 442 238 HOH HOH B . I 5 HOH 143 443 300 HOH HOH B . I 5 HOH 144 444 304 HOH HOH B . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.7.0032 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? MOLREP ? ? ? . 4 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 5YKX _cell.details ? _cell.formula_units_Z ? _cell.length_a 134.175 _cell.length_a_esd ? _cell.length_b 134.175 _cell.length_b_esd ? _cell.length_c 134.175 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 48 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5YKX _symmetry.cell_setting ? _symmetry.Int_Tables_number 212 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 3 2' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5YKX _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 3.75 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 67.18 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '1.0M Sodium acetate trihydrate, 0.1M Sodium HEPES 7.5, 0.05M Cadmium sulfate 8/3-hydrate' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'RAYONIX MX300HE' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2015-07-21 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SPRING-8 BEAMLINE BL44XU' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL44XU _diffrn_source.pdbx_synchrotron_site SPring-8 # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5YKX _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.0 _reflns.d_resolution_low 30 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 28636 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.9 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 20.0 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value 0.112 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 41.3 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.115 _reflns.pdbx_Rpim_I_all 0.025 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.00 _reflns_shell.d_res_low 2.03 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all 99.8 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 19.0 _reflns_shell.pdbx_Rsym_value 0.830 _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all 0.853 _reflns_shell.pdbx_Rpim_I_all 0.191 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.953 _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] 0.00 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][2] 0.00 _refine.aniso_B[2][3] 0.00 _refine.aniso_B[3][3] 0.00 _refine.B_iso_max ? _refine.B_iso_mean 29.550 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.966 _refine.correlation_coeff_Fo_to_Fc_free 0.944 _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5YKX _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.00 _refine.ls_d_res_low 29.30 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 27072 _refine.ls_number_reflns_R_free 1439 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.66 _refine.ls_percent_reflns_R_free 5.0 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.15781 _refine.ls_R_factor_R_free 0.19478 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.15587 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.110 _refine.pdbx_overall_ESU_R_Free 0.113 _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 2.354 _refine.overall_SU_ML 0.067 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id 1 _refine_hist.pdbx_number_atoms_protein 1880 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 23 _refine_hist.number_atoms_solvent 308 _refine_hist.number_atoms_total 2211 _refine_hist.d_res_high 2.00 _refine_hist.d_res_low 29.30 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.022 0.020 1938 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.001 0.020 1799 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 2.221 1.965 2645 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 0.990 3.000 4152 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? 8.407 5.000 239 ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? 32.846 25.529 85 ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? 13.408 15.000 303 ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? 21.046 15.000 6 ? r_dihedral_angle_4_deg ? ? 'X-RAY DIFFRACTION' ? 0.142 0.200 306 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.011 0.021 2195 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.001 0.020 423 ? r_gen_planes_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? 2.762 2.469 962 ? r_mcbond_it ? ? 'X-RAY DIFFRACTION' ? 2.751 2.467 961 ? r_mcbond_other ? ? 'X-RAY DIFFRACTION' ? 3.698 3.679 1199 ? r_mcangle_it ? ? 'X-RAY DIFFRACTION' ? 3.700 3.680 1200 ? r_mcangle_other ? ? 'X-RAY DIFFRACTION' ? 4.860 2.926 976 ? r_scbond_it ? ? 'X-RAY DIFFRACTION' ? 4.632 2.918 972 ? r_scbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_scangle_it ? ? 'X-RAY DIFFRACTION' ? 7.007 4.211 1441 ? r_scangle_other ? ? 'X-RAY DIFFRACTION' ? 24.959 26.231 2645 ? r_long_range_B_refined ? ? 'X-RAY DIFFRACTION' ? 24.416 24.522 2454 ? r_long_range_B_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_rigid_bond_restr ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_sphericity_free ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_sphericity_bonded ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 1.997 _refine_ls_shell.d_res_low 2.049 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 102 _refine_ls_shell.number_reflns_R_work 1938 _refine_ls_shell.percent_reflns_obs 99.37 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.181 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.161 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 5YKX _struct.title 'The crystal structure of Macrobrachium rosenbergii nodavirus P-domain with Cd ion' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5YKX _struct_keywords.text 'viral capsid protein, VIRAL PROTEIN' _struct_keywords.pdbx_keywords 'VIRAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 3 ? G N N 4 ? H N N 5 ? I N N 5 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q6XNL3_MRNV _struct_ref.pdbx_db_accession Q6XNL3 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;PTPVEVSQLTYNADTIGNWVPPTELKQTYTQDITGLKPNSKFIIVPYMDRVSSEVLQKCTITCNEVDAVGSISYFDTSAI KCDGYISFQANSIGEATFTLVTDYQGAVDPKPYQYRIIRAIVGNN ; _struct_ref.pdbx_align_begin 247 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5YKX A 1 ? 125 ? Q6XNL3 247 ? 371 ? 2 126 2 1 5YKX B 1 ? 125 ? Q6XNL3 247 ? 371 ? 2 126 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3270 ? 1 MORE -39 ? 1 'SSA (A^2)' 11420 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id AA1 _struct_conf.beg_label_comp_id GLU _struct_conf.beg_label_asym_id B _struct_conf.beg_label_seq_id 5 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id LEU _struct_conf.end_label_asym_id B _struct_conf.end_label_seq_id 9 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id GLU _struct_conf.beg_auth_asym_id B _struct_conf.beg_auth_seq_id 6 _struct_conf.end_auth_comp_id LEU _struct_conf.end_auth_asym_id B _struct_conf.end_auth_seq_id 10 _struct_conf.pdbx_PDB_helix_class 5 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A TYR 47 C ? ? ? 1_555 A MSE 48 N ? ? A TYR 48 A MSE 49 1_555 ? ? ? ? ? ? ? 1.346 ? ? covale2 covale both ? A MSE 48 C ? ? ? 1_555 A ASP 49 N ? ? A MSE 49 A ASP 50 1_555 ? ? ? ? ? ? ? 1.303 ? ? covale3 covale both ? B TYR 47 C ? ? ? 1_555 B MSE 48 N ? ? B TYR 48 B MSE 49 1_555 ? ? ? ? ? ? ? 1.315 ? ? covale4 covale both ? B MSE 48 C ? ? ? 1_555 B ASP 49 N ? ? B MSE 49 B ASP 50 1_555 ? ? ? ? ? ? ? 1.324 ? ? metalc1 metalc ? ? A GLU 54 OE1 ? ? ? 1_555 C CD . CD ? ? A GLU 55 A CD 201 1_555 ? ? ? ? ? ? ? 2.393 ? ? metalc2 metalc ? ? A GLU 54 OE2 ? ? ? 1_555 C CD . CD ? ? A GLU 55 A CD 201 1_555 ? ? ? ? ? ? ? 2.347 ? ? metalc3 metalc ? ? A GLU 54 OE1 ? ? ? 1_555 C CD . CD ? ? A GLU 55 A CD 201 5_555 ? ? ? ? ? ? ? 2.393 ? ? metalc4 metalc ? ? A GLU 54 OE2 ? ? ? 1_555 C CD . CD ? ? A GLU 55 A CD 201 5_555 ? ? ? ? ? ? ? 2.347 ? ? metalc5 metalc ? ? B GLU 54 OE1 ? ? ? 1_555 D CD . CD ? ? B GLU 55 B CD 201 1_555 ? ? ? ? ? ? ? 2.295 ? ? metalc6 metalc ? ? B GLU 54 OE2 ? ? ? 1_555 D CD . CD ? ? B GLU 55 B CD 201 1_555 ? ? ? ? ? ? ? 2.480 ? ? metalc7 metalc ? ? B GLU 54 OE1 ? ? ? 1_555 D CD . CD ? ? B GLU 55 B CD 201 5_555 ? ? ? ? ? ? ? 2.295 ? ? metalc8 metalc ? ? B GLU 54 OE2 ? ? ? 1_555 D CD . CD ? ? B GLU 55 B CD 201 5_555 ? ? ? ? ? ? ? 2.480 ? ? metalc9 metalc ? ? B CYS 63 SG ? ? ? 1_555 E CD . CD ? ? B CYS 64 B CD 202 1_555 ? ? ? ? ? ? ? 2.325 ? ? metalc10 metalc ? ? B THR 97 O ? ? ? 1_555 E CD . CD ? ? B THR 98 B CD 202 1_555 ? ? ? ? ? ? ? 2.357 ? ? metalc11 metalc ? ? E CD . CD ? ? ? 1_555 G SO4 . S ? ? B CD 202 B SO4 204 1_555 ? ? ? ? ? ? ? 2.827 ? ? metalc12 metalc ? ? E CD . CD ? ? ? 1_555 I HOH . O ? ? B CD 202 B HOH 344 1_555 ? ? ? ? ? ? ? 2.540 ? ? metalc13 metalc ? ? E CD . CD ? ? ? 1_555 I HOH . O ? ? B CD 202 B HOH 382 1_555 ? ? ? ? ? ? ? 2.199 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OE1 ? A GLU 54 ? A GLU 55 ? 1_555 CD ? C CD . ? A CD 201 ? 1_555 OE2 ? A GLU 54 ? A GLU 55 ? 1_555 51.3 ? 2 OE1 ? A GLU 54 ? A GLU 55 ? 1_555 CD ? C CD . ? A CD 201 ? 1_555 OE1 ? A GLU 54 ? A GLU 55 ? 1_555 0.0 ? 3 OE2 ? A GLU 54 ? A GLU 55 ? 1_555 CD ? C CD . ? A CD 201 ? 1_555 OE1 ? A GLU 54 ? A GLU 55 ? 1_555 51.3 ? 4 OE1 ? A GLU 54 ? A GLU 55 ? 1_555 CD ? C CD . ? A CD 201 ? 1_555 OE2 ? A GLU 54 ? A GLU 55 ? 1_555 51.3 ? 5 OE2 ? A GLU 54 ? A GLU 55 ? 1_555 CD ? C CD . ? A CD 201 ? 1_555 OE2 ? A GLU 54 ? A GLU 55 ? 1_555 0.0 ? 6 OE1 ? A GLU 54 ? A GLU 55 ? 1_555 CD ? C CD . ? A CD 201 ? 1_555 OE2 ? A GLU 54 ? A GLU 55 ? 1_555 51.3 ? 7 OE1 ? B GLU 54 ? B GLU 55 ? 1_555 CD ? D CD . ? B CD 201 ? 1_555 OE2 ? B GLU 54 ? B GLU 55 ? 1_555 53.4 ? 8 OE1 ? B GLU 54 ? B GLU 55 ? 1_555 CD ? D CD . ? B CD 201 ? 1_555 OE1 ? B GLU 54 ? B GLU 55 ? 1_555 0.0 ? 9 OE2 ? B GLU 54 ? B GLU 55 ? 1_555 CD ? D CD . ? B CD 201 ? 1_555 OE1 ? B GLU 54 ? B GLU 55 ? 1_555 53.4 ? 10 OE1 ? B GLU 54 ? B GLU 55 ? 1_555 CD ? D CD . ? B CD 201 ? 1_555 OE2 ? B GLU 54 ? B GLU 55 ? 1_555 53.4 ? 11 OE2 ? B GLU 54 ? B GLU 55 ? 1_555 CD ? D CD . ? B CD 201 ? 1_555 OE2 ? B GLU 54 ? B GLU 55 ? 1_555 0.0 ? 12 OE1 ? B GLU 54 ? B GLU 55 ? 1_555 CD ? D CD . ? B CD 201 ? 1_555 OE2 ? B GLU 54 ? B GLU 55 ? 1_555 53.4 ? 13 SG ? B CYS 63 ? B CYS 64 ? 1_555 CD ? E CD . ? B CD 202 ? 1_555 O ? B THR 97 ? B THR 98 ? 1_555 107.7 ? 14 SG ? B CYS 63 ? B CYS 64 ? 1_555 CD ? E CD . ? B CD 202 ? 1_555 S ? G SO4 . ? B SO4 204 ? 1_555 123.0 ? 15 O ? B THR 97 ? B THR 98 ? 1_555 CD ? E CD . ? B CD 202 ? 1_555 S ? G SO4 . ? B SO4 204 ? 1_555 87.4 ? 16 SG ? B CYS 63 ? B CYS 64 ? 1_555 CD ? E CD . ? B CD 202 ? 1_555 O ? I HOH . ? B HOH 344 ? 1_555 104.1 ? 17 O ? B THR 97 ? B THR 98 ? 1_555 CD ? E CD . ? B CD 202 ? 1_555 O ? I HOH . ? B HOH 344 ? 1_555 137.3 ? 18 S ? G SO4 . ? B SO4 204 ? 1_555 CD ? E CD . ? B CD 202 ? 1_555 O ? I HOH . ? B HOH 344 ? 1_555 98.5 ? 19 SG ? B CYS 63 ? B CYS 64 ? 1_555 CD ? E CD . ? B CD 202 ? 1_555 O ? I HOH . ? B HOH 382 ? 1_555 114.2 ? 20 O ? B THR 97 ? B THR 98 ? 1_555 CD ? E CD . ? B CD 202 ? 1_555 O ? I HOH . ? B HOH 382 ? 1_555 89.2 ? 21 S ? G SO4 . ? B SO4 204 ? 1_555 CD ? E CD . ? B CD 202 ? 1_555 O ? I HOH . ? B HOH 382 ? 1_555 120.8 ? 22 O ? I HOH . ? B HOH 344 ? 1_555 CD ? E CD . ? B CD 202 ? 1_555 O ? I HOH . ? B HOH 382 ? 1_555 51.5 ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 MSE A 48 ? . . . . MSE A 49 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 2 MSE B 48 ? . . . . MSE B 49 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 4 ? AA2 ? 8 ? AA3 ? 8 ? AA4 ? 7 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA2 4 5 ? anti-parallel AA2 5 6 ? anti-parallel AA2 6 7 ? anti-parallel AA2 7 8 ? anti-parallel AA3 1 2 ? anti-parallel AA3 2 3 ? anti-parallel AA3 3 4 ? anti-parallel AA3 4 5 ? anti-parallel AA3 5 6 ? anti-parallel AA3 6 7 ? anti-parallel AA3 7 8 ? anti-parallel AA4 1 2 ? anti-parallel AA4 2 3 ? anti-parallel AA4 3 4 ? anti-parallel AA4 4 5 ? anti-parallel AA4 5 6 ? anti-parallel AA4 6 7 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 THR A 10 ? ASN A 18 ? THR A 11 ASN A 19 AA1 2 GLN A 114 ? ILE A 121 ? GLN A 115 ILE A 122 AA1 3 LYS A 41 ? VAL A 51 ? LYS A 42 VAL A 52 AA1 4 ILE A 86 ? GLN A 89 ? ILE A 87 GLN A 90 AA2 1 THR A 10 ? ASN A 18 ? THR A 11 ASN A 19 AA2 2 GLN A 114 ? ILE A 121 ? GLN A 115 ILE A 122 AA2 3 LYS A 41 ? VAL A 51 ? LYS A 42 VAL A 52 AA2 4 ALA B 79 ? GLY B 84 ? ALA B 80 GLY B 85 AA2 5 SER B 71 ? PHE B 75 ? SER B 72 PHE B 76 AA2 6 GLN B 57 ? THR B 62 ? GLN B 58 THR B 63 AA2 7 ALA B 96 ? TYR B 104 ? ALA B 97 TYR B 105 AA2 8 LYS B 26 ? ILE B 33 ? LYS B 27 ILE B 34 AA3 1 LYS A 26 ? ILE A 33 ? LYS A 27 ILE A 34 AA3 2 ALA A 96 ? TYR A 104 ? ALA A 97 TYR A 105 AA3 3 GLN A 57 ? CYS A 63 ? GLN A 58 CYS A 64 AA3 4 ILE A 72 ? PHE A 75 ? ILE A 73 PHE A 76 AA3 5 ALA A 79 ? GLY A 84 ? ALA A 80 GLY A 85 AA3 6 LYS B 41 ? VAL B 51 ? LYS B 42 VAL B 52 AA3 7 GLN B 114 ? ILE B 121 ? GLN B 115 ILE B 122 AA3 8 THR B 10 ? ASN B 18 ? THR B 11 ASN B 19 AA4 1 LYS A 26 ? ILE A 33 ? LYS A 27 ILE A 34 AA4 2 ALA A 96 ? TYR A 104 ? ALA A 97 TYR A 105 AA4 3 GLN A 57 ? CYS A 63 ? GLN A 58 CYS A 64 AA4 4 ILE A 72 ? PHE A 75 ? ILE A 73 PHE A 76 AA4 5 ALA A 79 ? GLY A 84 ? ALA A 80 GLY A 85 AA4 6 LYS B 41 ? VAL B 51 ? LYS B 42 VAL B 52 AA4 7 ILE B 86 ? GLN B 89 ? ILE B 87 GLN B 90 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N THR A 10 ? N THR A 11 O ILE A 121 ? O ILE A 122 AA1 2 3 O ILE A 118 ? O ILE A 119 N ILE A 43 ? N ILE A 44 AA1 3 4 N PHE A 42 ? N PHE A 43 O PHE A 88 ? O PHE A 89 AA2 1 2 N THR A 10 ? N THR A 11 O ILE A 121 ? O ILE A 122 AA2 2 3 O ILE A 118 ? O ILE A 119 N ILE A 43 ? N ILE A 44 AA2 3 4 N MSE A 48 ? N MSE A 49 O CYS B 82 ? O CYS B 83 AA2 4 5 O ASP B 83 ? O ASP B 84 N SER B 73 ? N SER B 74 AA2 5 6 O ILE B 72 ? O ILE B 73 N ILE B 61 ? N ILE B 62 AA2 6 7 N THR B 62 ? N THR B 63 O THR B 99 ? O THR B 100 AA2 7 8 O ALA B 96 ? O ALA B 97 N ILE B 33 ? N ILE B 34 AA3 1 2 N TYR A 29 ? N TYR A 30 O LEU A 100 ? O LEU A 101 AA3 2 3 O VAL A 101 ? O VAL A 102 N THR A 60 ? N THR A 61 AA3 3 4 N CYS A 59 ? N CYS A 60 O TYR A 74 ? O TYR A 75 AA3 4 5 N SER A 73 ? N SER A 74 O ASP A 83 ? O ASP A 84 AA3 5 6 N CYS A 82 ? N CYS A 83 O MSE B 48 ? O MSE B 49 AA3 6 7 N ILE B 43 ? N ILE B 44 O ILE B 118 ? O ILE B 119 AA3 7 8 O ARG B 119 ? O ARG B 120 N ASN B 12 ? N ASN B 13 AA4 1 2 N TYR A 29 ? N TYR A 30 O LEU A 100 ? O LEU A 101 AA4 2 3 O VAL A 101 ? O VAL A 102 N THR A 60 ? N THR A 61 AA4 3 4 N CYS A 59 ? N CYS A 60 O TYR A 74 ? O TYR A 75 AA4 4 5 N SER A 73 ? N SER A 74 O ASP A 83 ? O ASP A 84 AA4 5 6 N CYS A 82 ? N CYS A 83 O MSE B 48 ? O MSE B 49 AA4 6 7 N ILE B 44 ? N ILE B 45 O ILE B 86 ? O ILE B 87 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A CD 201 ? 3 'binding site for residue CD A 201' AC2 Software B CD 201 ? 3 'binding site for residue CD B 201' AC3 Software B CD 202 ? 5 'binding site for residue CD B 202' AC4 Software B EPE 203 ? 11 'binding site for residue EPE B 203' AC5 Software B SO4 204 ? 9 'binding site for residue SO4 B 204' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 GLU A 54 ? GLU A 55 . ? 1_555 ? 2 AC1 3 GLU A 54 ? GLU A 55 . ? 5_555 ? 3 AC1 3 GLU A 54 ? GLU A 55 . ? 9_555 ? 4 AC2 3 GLU B 54 ? GLU B 55 . ? 5_555 ? 5 AC2 3 GLU B 54 ? GLU B 55 . ? 9_555 ? 6 AC2 3 GLU B 54 ? GLU B 55 . ? 1_555 ? 7 AC3 5 CYS B 63 ? CYS B 64 . ? 1_555 ? 8 AC3 5 THR B 97 ? THR B 98 . ? 1_555 ? 9 AC3 5 SO4 G . ? SO4 B 204 . ? 1_555 ? 10 AC3 5 HOH I . ? HOH B 344 . ? 1_555 ? 11 AC3 5 HOH I . ? HOH B 382 . ? 1_555 ? 12 AC4 11 HOH H . ? HOH A 414 . ? 21_544 ? 13 AC4 11 LYS B 58 ? LYS B 59 . ? 13_544 ? 14 AC4 11 ASN B 64 ? ASN B 65 . ? 1_555 ? 15 AC4 11 GLU B 65 ? GLU B 66 . ? 1_555 ? 16 AC4 11 VAL B 66 ? VAL B 67 . ? 1_555 ? 17 AC4 11 SO4 G . ? SO4 B 204 . ? 1_555 ? 18 AC4 11 HOH I . ? HOH B 303 . ? 1_555 ? 19 AC4 11 HOH I . ? HOH B 344 . ? 1_555 ? 20 AC4 11 HOH I . ? HOH B 413 . ? 1_555 ? 21 AC4 11 HOH I . ? HOH B 423 . ? 1_555 ? 22 AC4 11 HOH I . ? HOH B 431 . ? 1_555 ? 23 AC5 9 CYS B 63 ? CYS B 64 . ? 1_555 ? 24 AC5 9 ASN B 64 ? ASN B 65 . ? 1_555 ? 25 AC5 9 THR B 97 ? THR B 98 . ? 1_555 ? 26 AC5 9 THR B 99 ? THR B 100 . ? 1_555 ? 27 AC5 9 CD E . ? CD B 202 . ? 1_555 ? 28 AC5 9 EPE F . ? EPE B 203 . ? 1_555 ? 29 AC5 9 HOH I . ? HOH B 303 . ? 1_555 ? 30 AC5 9 HOH I . ? HOH B 344 . ? 1_555 ? 31 AC5 9 HOH I . ? HOH B 382 . ? 1_555 ? # _pdbx_entry_details.entry_id 5YKX _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O B HOH 311 ? ? O B HOH 409 ? ? 1.43 2 1 CB A THR 29 ? ? O A HOH 322 ? ? 1.50 3 1 CG1 A ILE 81 ? ? O A HOH 429 ? ? 1.63 4 1 NE2 A GLN 9 ? ? O A HOH 301 ? ? 1.67 5 1 CB A SER 79 ? ? O A HOH 306 ? ? 1.69 6 1 O B HOH 314 ? ? O B HOH 331 ? ? 1.69 7 1 O A HOH 408 ? ? O A HOH 436 ? ? 1.71 8 1 CD B CD 202 ? ? O1 B SO4 204 ? ? 1.73 9 1 O A HOH 305 ? ? O A HOH 354 ? ? 1.76 10 1 O A HOH 416 ? ? O A HOH 441 ? ? 1.77 11 1 O B HOH 416 ? ? O B HOH 418 ? ? 1.79 12 1 CB B THR 29 ? ? O B HOH 306 ? ? 1.85 13 1 O A HOH 320 ? ? O A HOH 365 ? ? 1.86 14 1 CB B THR 63 ? ? O B HOH 395 ? ? 1.88 15 1 C B ASN 126 ? ? O B HOH 339 ? ? 1.89 16 1 CB A VAL 70 ? ? O A HOH 420 ? ? 1.90 17 1 O B HOH 352 ? ? O B HOH 397 ? ? 1.93 18 1 O A HOH 377 ? ? O A HOH 436 ? ? 1.93 19 1 O B HOH 332 ? ? O B HOH 396 ? ? 1.94 20 1 OD1 B ASN 65 ? ? O2 B SO4 204 ? ? 1.95 21 1 O A HOH 333 ? ? O A HOH 401 ? ? 1.95 22 1 O B HOH 430 ? ? O B HOH 439 ? ? 1.95 23 1 O A HOH 314 ? ? O A HOH 346 ? ? 1.96 24 1 O A HOH 325 ? ? O A HOH 382 ? ? 1.96 25 1 O B HOH 386 ? ? O B HOH 427 ? ? 1.97 26 1 O A HOH 398 ? ? O A HOH 428 ? ? 2.00 27 1 O B HOH 409 ? ? O B HOH 421 ? ? 2.02 28 1 O B HOH 419 ? ? O B HOH 427 ? ? 2.02 29 1 O A HOH 428 ? ? O B HOH 312 ? ? 2.03 30 1 O B HOH 376 ? ? O B HOH 402 ? ? 2.04 31 1 O B HOH 313 ? ? O B HOH 319 ? ? 2.06 32 1 CB B ASN 13 ? ? O B HOH 349 ? ? 2.06 33 1 OE2 B GLU 66 ? ? O2S B EPE 203 ? ? 2.06 34 1 O A HOH 383 ? ? O A HOH 456 ? ? 2.08 35 1 O B HOH 344 ? ? O B HOH 382 ? ? 2.08 36 1 O A VAL 56 ? ? O A HOH 302 ? ? 2.09 37 1 O B HOH 310 ? ? O B HOH 424 ? ? 2.10 38 1 OD2 A ASP 15 ? ? O A HOH 303 ? ? 2.12 39 1 CG B PRO 113 ? ? O B HOH 341 ? ? 2.12 40 1 O B HOH 378 ? ? O B HOH 415 ? ? 2.13 41 1 CD1 A ILE 87 ? ? O A HOH 317 ? ? 2.13 42 1 O A HOH 416 ? ? O B HOH 416 ? ? 2.14 43 1 O A HOH 355 ? ? O A HOH 417 ? ? 2.14 44 1 O A MSE 49 ? ? O A HOH 304 ? ? 2.14 45 1 O B HOH 369 ? ? O B HOH 377 ? ? 2.15 46 1 O A HOH 380 ? ? O A HOH 434 ? ? 2.16 47 1 O B HOH 338 ? ? O B HOH 430 ? ? 2.17 48 1 O A HOH 318 ? ? O A HOH 440 ? ? 2.18 49 1 N A GLN 115 ? ? O A HOH 305 ? ? 2.18 50 1 O B HOH 325 ? ? O B HOH 367 ? ? 2.19 51 1 O A HOH 332 ? ? O A HOH 438 ? ? 2.19 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 B _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 381 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 B _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 419 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 13_544 _pdbx_validate_symm_contact.dist 2.19 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 CD _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 GLU _pdbx_validate_rmsd_bond.auth_seq_id_1 55 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 OE2 _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 GLU _pdbx_validate_rmsd_bond.auth_seq_id_2 55 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.185 _pdbx_validate_rmsd_bond.bond_target_value 1.252 _pdbx_validate_rmsd_bond.bond_deviation -0.067 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.011 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CB A ASP 33 ? ? CG A ASP 33 ? ? OD1 A ASP 33 ? ? 124.17 118.30 5.87 0.90 N 2 1 CA A SER 72 ? ? CB A SER 72 ? ? OG A SER 72 ? ? 93.89 111.20 -17.31 2.70 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 50 ? ? -152.38 75.60 2 1 SER A 79 ? ? 64.79 -65.85 3 1 ALA A 108 ? ? -159.41 49.18 4 1 ASP B 68 ? ? 81.58 -17.10 5 1 SER B 79 ? ? 66.31 -63.09 6 1 ALA B 108 ? ? -155.65 44.41 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 ASP _pdbx_validate_peptide_omega.auth_asym_id_1 B _pdbx_validate_peptide_omega.auth_seq_id_1 68 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 ALA _pdbx_validate_peptide_omega.auth_asym_id_2 B _pdbx_validate_peptide_omega.auth_seq_id_2 69 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega 147.96 # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 48 A MSE 49 ? MET 'modified residue' 2 B MSE 48 B MSE 49 ? MET 'modified residue' # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A CD 201 ? C CD . 2 1 B CD 201 ? D CD . 3 1 A HOH 334 ? H HOH . 4 1 A HOH 464 ? H HOH . 5 1 B HOH 305 ? I HOH . 6 1 B HOH 414 ? I HOH . # _pdbx_distant_solvent_atoms.id 1 _pdbx_distant_solvent_atoms.PDB_model_num 1 _pdbx_distant_solvent_atoms.auth_atom_id O _pdbx_distant_solvent_atoms.label_alt_id ? _pdbx_distant_solvent_atoms.auth_asym_id B _pdbx_distant_solvent_atoms.auth_comp_id HOH _pdbx_distant_solvent_atoms.auth_seq_id 444 _pdbx_distant_solvent_atoms.PDB_ins_code ? _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance 7.06 _pdbx_distant_solvent_atoms.neighbor_ligand_distance . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A PRO 2 ? A PRO 1 2 1 Y 1 A THR 3 ? A THR 2 3 1 Y 1 A PRO 4 ? A PRO 3 4 1 Y 1 A VAL 5 ? A VAL 4 5 1 Y 1 A GLU 6 ? A GLU 5 6 1 Y 1 A VAL 7 ? A VAL 6 7 1 Y 1 A SER 8 ? A SER 7 8 1 Y 1 B PRO 2 ? B PRO 1 9 1 Y 1 B THR 3 ? B THR 2 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CD CD CD N N 74 CYS N N N N 75 CYS CA C N R 76 CYS C C N N 77 CYS O O N N 78 CYS CB C N N 79 CYS SG S N N 80 CYS OXT O N N 81 CYS H H N N 82 CYS H2 H N N 83 CYS HA H N N 84 CYS HB2 H N N 85 CYS HB3 H N N 86 CYS HG H N N 87 CYS HXT H N N 88 EPE N1 N N N 89 EPE C2 C N N 90 EPE C3 C N N 91 EPE N4 N N N 92 EPE C5 C N N 93 EPE C6 C N N 94 EPE C7 C N N 95 EPE C8 C N N 96 EPE O8 O N N 97 EPE C9 C N N 98 EPE C10 C N N 99 EPE S S N N 100 EPE O1S O N N 101 EPE O2S O N N 102 EPE O3S O N N 103 EPE H21 H N N 104 EPE H22 H N N 105 EPE H31 H N N 106 EPE H32 H N N 107 EPE H51 H N N 108 EPE H52 H N N 109 EPE H61 H N N 110 EPE H62 H N N 111 EPE H71 H N N 112 EPE H72 H N N 113 EPE H81 H N N 114 EPE H82 H N N 115 EPE HO8 H N N 116 EPE H91 H N N 117 EPE H92 H N N 118 EPE H101 H N N 119 EPE H102 H N N 120 EPE HOS3 H N N 121 GLN N N N N 122 GLN CA C N S 123 GLN C C N N 124 GLN O O N N 125 GLN CB C N N 126 GLN CG C N N 127 GLN CD C N N 128 GLN OE1 O N N 129 GLN NE2 N N N 130 GLN OXT O N N 131 GLN H H N N 132 GLN H2 H N N 133 GLN HA H N N 134 GLN HB2 H N N 135 GLN HB3 H N N 136 GLN HG2 H N N 137 GLN HG3 H N N 138 GLN HE21 H N N 139 GLN HE22 H N N 140 GLN HXT H N N 141 GLU N N N N 142 GLU CA C N S 143 GLU C C N N 144 GLU O O N N 145 GLU CB C N N 146 GLU CG C N N 147 GLU CD C N N 148 GLU OE1 O N N 149 GLU OE2 O N N 150 GLU OXT O N N 151 GLU H H N N 152 GLU H2 H N N 153 GLU HA H N N 154 GLU HB2 H N N 155 GLU HB3 H N N 156 GLU HG2 H N N 157 GLU HG3 H N N 158 GLU HE2 H N N 159 GLU HXT H N N 160 GLY N N N N 161 GLY CA C N N 162 GLY C C N N 163 GLY O O N N 164 GLY OXT O N N 165 GLY H H N N 166 GLY H2 H N N 167 GLY HA2 H N N 168 GLY HA3 H N N 169 GLY HXT H N N 170 HOH O O N N 171 HOH H1 H N N 172 HOH H2 H N N 173 ILE N N N N 174 ILE CA C N S 175 ILE C C N N 176 ILE O O N N 177 ILE CB C N S 178 ILE CG1 C N N 179 ILE CG2 C N N 180 ILE CD1 C N N 181 ILE OXT O N N 182 ILE H H N N 183 ILE H2 H N N 184 ILE HA H N N 185 ILE HB H N N 186 ILE HG12 H N N 187 ILE HG13 H N N 188 ILE HG21 H N N 189 ILE HG22 H N N 190 ILE HG23 H N N 191 ILE HD11 H N N 192 ILE HD12 H N N 193 ILE HD13 H N N 194 ILE HXT H N N 195 LEU N N N N 196 LEU CA C N S 197 LEU C C N N 198 LEU O O N N 199 LEU CB C N N 200 LEU CG C N N 201 LEU CD1 C N N 202 LEU CD2 C N N 203 LEU OXT O N N 204 LEU H H N N 205 LEU H2 H N N 206 LEU HA H N N 207 LEU HB2 H N N 208 LEU HB3 H N N 209 LEU HG H N N 210 LEU HD11 H N N 211 LEU HD12 H N N 212 LEU HD13 H N N 213 LEU HD21 H N N 214 LEU HD22 H N N 215 LEU HD23 H N N 216 LEU HXT H N N 217 LYS N N N N 218 LYS CA C N S 219 LYS C C N N 220 LYS O O N N 221 LYS CB C N N 222 LYS CG C N N 223 LYS CD C N N 224 LYS CE C N N 225 LYS NZ N N N 226 LYS OXT O N N 227 LYS H H N N 228 LYS H2 H N N 229 LYS HA H N N 230 LYS HB2 H N N 231 LYS HB3 H N N 232 LYS HG2 H N N 233 LYS HG3 H N N 234 LYS HD2 H N N 235 LYS HD3 H N N 236 LYS HE2 H N N 237 LYS HE3 H N N 238 LYS HZ1 H N N 239 LYS HZ2 H N N 240 LYS HZ3 H N N 241 LYS HXT H N N 242 MSE N N N N 243 MSE CA C N S 244 MSE C C N N 245 MSE O O N N 246 MSE OXT O N N 247 MSE CB C N N 248 MSE CG C N N 249 MSE SE SE N N 250 MSE CE C N N 251 MSE H H N N 252 MSE H2 H N N 253 MSE HA H N N 254 MSE HXT H N N 255 MSE HB2 H N N 256 MSE HB3 H N N 257 MSE HG2 H N N 258 MSE HG3 H N N 259 MSE HE1 H N N 260 MSE HE2 H N N 261 MSE HE3 H N N 262 PHE N N N N 263 PHE CA C N S 264 PHE C C N N 265 PHE O O N N 266 PHE CB C N N 267 PHE CG C Y N 268 PHE CD1 C Y N 269 PHE CD2 C Y N 270 PHE CE1 C Y N 271 PHE CE2 C Y N 272 PHE CZ C Y N 273 PHE OXT O N N 274 PHE H H N N 275 PHE H2 H N N 276 PHE HA H N N 277 PHE HB2 H N N 278 PHE HB3 H N N 279 PHE HD1 H N N 280 PHE HD2 H N N 281 PHE HE1 H N N 282 PHE HE2 H N N 283 PHE HZ H N N 284 PHE HXT H N N 285 PRO N N N N 286 PRO CA C N S 287 PRO C C N N 288 PRO O O N N 289 PRO CB C N N 290 PRO CG C N N 291 PRO CD C N N 292 PRO OXT O N N 293 PRO H H N N 294 PRO HA H N N 295 PRO HB2 H N N 296 PRO HB3 H N N 297 PRO HG2 H N N 298 PRO HG3 H N N 299 PRO HD2 H N N 300 PRO HD3 H N N 301 PRO HXT H N N 302 SER N N N N 303 SER CA C N S 304 SER C C N N 305 SER O O N N 306 SER CB C N N 307 SER OG O N N 308 SER OXT O N N 309 SER H H N N 310 SER H2 H N N 311 SER HA H N N 312 SER HB2 H N N 313 SER HB3 H N N 314 SER HG H N N 315 SER HXT H N N 316 SO4 S S N N 317 SO4 O1 O N N 318 SO4 O2 O N N 319 SO4 O3 O N N 320 SO4 O4 O N N 321 THR N N N N 322 THR CA C N S 323 THR C C N N 324 THR O O N N 325 THR CB C N R 326 THR OG1 O N N 327 THR CG2 C N N 328 THR OXT O N N 329 THR H H N N 330 THR H2 H N N 331 THR HA H N N 332 THR HB H N N 333 THR HG1 H N N 334 THR HG21 H N N 335 THR HG22 H N N 336 THR HG23 H N N 337 THR HXT H N N 338 TRP N N N N 339 TRP CA C N S 340 TRP C C N N 341 TRP O O N N 342 TRP CB C N N 343 TRP CG C Y N 344 TRP CD1 C Y N 345 TRP CD2 C Y N 346 TRP NE1 N Y N 347 TRP CE2 C Y N 348 TRP CE3 C Y N 349 TRP CZ2 C Y N 350 TRP CZ3 C Y N 351 TRP CH2 C Y N 352 TRP OXT O N N 353 TRP H H N N 354 TRP H2 H N N 355 TRP HA H N N 356 TRP HB2 H N N 357 TRP HB3 H N N 358 TRP HD1 H N N 359 TRP HE1 H N N 360 TRP HE3 H N N 361 TRP HZ2 H N N 362 TRP HZ3 H N N 363 TRP HH2 H N N 364 TRP HXT H N N 365 TYR N N N N 366 TYR CA C N S 367 TYR C C N N 368 TYR O O N N 369 TYR CB C N N 370 TYR CG C Y N 371 TYR CD1 C Y N 372 TYR CD2 C Y N 373 TYR CE1 C Y N 374 TYR CE2 C Y N 375 TYR CZ C Y N 376 TYR OH O N N 377 TYR OXT O N N 378 TYR H H N N 379 TYR H2 H N N 380 TYR HA H N N 381 TYR HB2 H N N 382 TYR HB3 H N N 383 TYR HD1 H N N 384 TYR HD2 H N N 385 TYR HE1 H N N 386 TYR HE2 H N N 387 TYR HH H N N 388 TYR HXT H N N 389 VAL N N N N 390 VAL CA C N S 391 VAL C C N N 392 VAL O O N N 393 VAL CB C N N 394 VAL CG1 C N N 395 VAL CG2 C N N 396 VAL OXT O N N 397 VAL H H N N 398 VAL H2 H N N 399 VAL HA H N N 400 VAL HB H N N 401 VAL HG11 H N N 402 VAL HG12 H N N 403 VAL HG13 H N N 404 VAL HG21 H N N 405 VAL HG22 H N N 406 VAL HG23 H N N 407 VAL HXT H N N 408 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 EPE N1 C2 sing N N 83 EPE N1 C6 sing N N 84 EPE N1 C9 sing N N 85 EPE C2 C3 sing N N 86 EPE C2 H21 sing N N 87 EPE C2 H22 sing N N 88 EPE C3 N4 sing N N 89 EPE C3 H31 sing N N 90 EPE C3 H32 sing N N 91 EPE N4 C5 sing N N 92 EPE N4 C7 sing N N 93 EPE C5 C6 sing N N 94 EPE C5 H51 sing N N 95 EPE C5 H52 sing N N 96 EPE C6 H61 sing N N 97 EPE C6 H62 sing N N 98 EPE C7 C8 sing N N 99 EPE C7 H71 sing N N 100 EPE C7 H72 sing N N 101 EPE C8 O8 sing N N 102 EPE C8 H81 sing N N 103 EPE C8 H82 sing N N 104 EPE O8 HO8 sing N N 105 EPE C9 C10 sing N N 106 EPE C9 H91 sing N N 107 EPE C9 H92 sing N N 108 EPE C10 S sing N N 109 EPE C10 H101 sing N N 110 EPE C10 H102 sing N N 111 EPE S O1S doub N N 112 EPE S O2S doub N N 113 EPE S O3S sing N N 114 EPE O3S HOS3 sing N N 115 GLN N CA sing N N 116 GLN N H sing N N 117 GLN N H2 sing N N 118 GLN CA C sing N N 119 GLN CA CB sing N N 120 GLN CA HA sing N N 121 GLN C O doub N N 122 GLN C OXT sing N N 123 GLN CB CG sing N N 124 GLN CB HB2 sing N N 125 GLN CB HB3 sing N N 126 GLN CG CD sing N N 127 GLN CG HG2 sing N N 128 GLN CG HG3 sing N N 129 GLN CD OE1 doub N N 130 GLN CD NE2 sing N N 131 GLN NE2 HE21 sing N N 132 GLN NE2 HE22 sing N N 133 GLN OXT HXT sing N N 134 GLU N CA sing N N 135 GLU N H sing N N 136 GLU N H2 sing N N 137 GLU CA C sing N N 138 GLU CA CB sing N N 139 GLU CA HA sing N N 140 GLU C O doub N N 141 GLU C OXT sing N N 142 GLU CB CG sing N N 143 GLU CB HB2 sing N N 144 GLU CB HB3 sing N N 145 GLU CG CD sing N N 146 GLU CG HG2 sing N N 147 GLU CG HG3 sing N N 148 GLU CD OE1 doub N N 149 GLU CD OE2 sing N N 150 GLU OE2 HE2 sing N N 151 GLU OXT HXT sing N N 152 GLY N CA sing N N 153 GLY N H sing N N 154 GLY N H2 sing N N 155 GLY CA C sing N N 156 GLY CA HA2 sing N N 157 GLY CA HA3 sing N N 158 GLY C O doub N N 159 GLY C OXT sing N N 160 GLY OXT HXT sing N N 161 HOH O H1 sing N N 162 HOH O H2 sing N N 163 ILE N CA sing N N 164 ILE N H sing N N 165 ILE N H2 sing N N 166 ILE CA C sing N N 167 ILE CA CB sing N N 168 ILE CA HA sing N N 169 ILE C O doub N N 170 ILE C OXT sing N N 171 ILE CB CG1 sing N N 172 ILE CB CG2 sing N N 173 ILE CB HB sing N N 174 ILE CG1 CD1 sing N N 175 ILE CG1 HG12 sing N N 176 ILE CG1 HG13 sing N N 177 ILE CG2 HG21 sing N N 178 ILE CG2 HG22 sing N N 179 ILE CG2 HG23 sing N N 180 ILE CD1 HD11 sing N N 181 ILE CD1 HD12 sing N N 182 ILE CD1 HD13 sing N N 183 ILE OXT HXT sing N N 184 LEU N CA sing N N 185 LEU N H sing N N 186 LEU N H2 sing N N 187 LEU CA C sing N N 188 LEU CA CB sing N N 189 LEU CA HA sing N N 190 LEU C O doub N N 191 LEU C OXT sing N N 192 LEU CB CG sing N N 193 LEU CB HB2 sing N N 194 LEU CB HB3 sing N N 195 LEU CG CD1 sing N N 196 LEU CG CD2 sing N N 197 LEU CG HG sing N N 198 LEU CD1 HD11 sing N N 199 LEU CD1 HD12 sing N N 200 LEU CD1 HD13 sing N N 201 LEU CD2 HD21 sing N N 202 LEU CD2 HD22 sing N N 203 LEU CD2 HD23 sing N N 204 LEU OXT HXT sing N N 205 LYS N CA sing N N 206 LYS N H sing N N 207 LYS N H2 sing N N 208 LYS CA C sing N N 209 LYS CA CB sing N N 210 LYS CA HA sing N N 211 LYS C O doub N N 212 LYS C OXT sing N N 213 LYS CB CG sing N N 214 LYS CB HB2 sing N N 215 LYS CB HB3 sing N N 216 LYS CG CD sing N N 217 LYS CG HG2 sing N N 218 LYS CG HG3 sing N N 219 LYS CD CE sing N N 220 LYS CD HD2 sing N N 221 LYS CD HD3 sing N N 222 LYS CE NZ sing N N 223 LYS CE HE2 sing N N 224 LYS CE HE3 sing N N 225 LYS NZ HZ1 sing N N 226 LYS NZ HZ2 sing N N 227 LYS NZ HZ3 sing N N 228 LYS OXT HXT sing N N 229 MSE N CA sing N N 230 MSE N H sing N N 231 MSE N H2 sing N N 232 MSE CA C sing N N 233 MSE CA CB sing N N 234 MSE CA HA sing N N 235 MSE C O doub N N 236 MSE C OXT sing N N 237 MSE OXT HXT sing N N 238 MSE CB CG sing N N 239 MSE CB HB2 sing N N 240 MSE CB HB3 sing N N 241 MSE CG SE sing N N 242 MSE CG HG2 sing N N 243 MSE CG HG3 sing N N 244 MSE SE CE sing N N 245 MSE CE HE1 sing N N 246 MSE CE HE2 sing N N 247 MSE CE HE3 sing N N 248 PHE N CA sing N N 249 PHE N H sing N N 250 PHE N H2 sing N N 251 PHE CA C sing N N 252 PHE CA CB sing N N 253 PHE CA HA sing N N 254 PHE C O doub N N 255 PHE C OXT sing N N 256 PHE CB CG sing N N 257 PHE CB HB2 sing N N 258 PHE CB HB3 sing N N 259 PHE CG CD1 doub Y N 260 PHE CG CD2 sing Y N 261 PHE CD1 CE1 sing Y N 262 PHE CD1 HD1 sing N N 263 PHE CD2 CE2 doub Y N 264 PHE CD2 HD2 sing N N 265 PHE CE1 CZ doub Y N 266 PHE CE1 HE1 sing N N 267 PHE CE2 CZ sing Y N 268 PHE CE2 HE2 sing N N 269 PHE CZ HZ sing N N 270 PHE OXT HXT sing N N 271 PRO N CA sing N N 272 PRO N CD sing N N 273 PRO N H sing N N 274 PRO CA C sing N N 275 PRO CA CB sing N N 276 PRO CA HA sing N N 277 PRO C O doub N N 278 PRO C OXT sing N N 279 PRO CB CG sing N N 280 PRO CB HB2 sing N N 281 PRO CB HB3 sing N N 282 PRO CG CD sing N N 283 PRO CG HG2 sing N N 284 PRO CG HG3 sing N N 285 PRO CD HD2 sing N N 286 PRO CD HD3 sing N N 287 PRO OXT HXT sing N N 288 SER N CA sing N N 289 SER N H sing N N 290 SER N H2 sing N N 291 SER CA C sing N N 292 SER CA CB sing N N 293 SER CA HA sing N N 294 SER C O doub N N 295 SER C OXT sing N N 296 SER CB OG sing N N 297 SER CB HB2 sing N N 298 SER CB HB3 sing N N 299 SER OG HG sing N N 300 SER OXT HXT sing N N 301 SO4 S O1 doub N N 302 SO4 S O2 doub N N 303 SO4 S O3 sing N N 304 SO4 S O4 sing N N 305 THR N CA sing N N 306 THR N H sing N N 307 THR N H2 sing N N 308 THR CA C sing N N 309 THR CA CB sing N N 310 THR CA HA sing N N 311 THR C O doub N N 312 THR C OXT sing N N 313 THR CB OG1 sing N N 314 THR CB CG2 sing N N 315 THR CB HB sing N N 316 THR OG1 HG1 sing N N 317 THR CG2 HG21 sing N N 318 THR CG2 HG22 sing N N 319 THR CG2 HG23 sing N N 320 THR OXT HXT sing N N 321 TRP N CA sing N N 322 TRP N H sing N N 323 TRP N H2 sing N N 324 TRP CA C sing N N 325 TRP CA CB sing N N 326 TRP CA HA sing N N 327 TRP C O doub N N 328 TRP C OXT sing N N 329 TRP CB CG sing N N 330 TRP CB HB2 sing N N 331 TRP CB HB3 sing N N 332 TRP CG CD1 doub Y N 333 TRP CG CD2 sing Y N 334 TRP CD1 NE1 sing Y N 335 TRP CD1 HD1 sing N N 336 TRP CD2 CE2 doub Y N 337 TRP CD2 CE3 sing Y N 338 TRP NE1 CE2 sing Y N 339 TRP NE1 HE1 sing N N 340 TRP CE2 CZ2 sing Y N 341 TRP CE3 CZ3 doub Y N 342 TRP CE3 HE3 sing N N 343 TRP CZ2 CH2 doub Y N 344 TRP CZ2 HZ2 sing N N 345 TRP CZ3 CH2 sing Y N 346 TRP CZ3 HZ3 sing N N 347 TRP CH2 HH2 sing N N 348 TRP OXT HXT sing N N 349 TYR N CA sing N N 350 TYR N H sing N N 351 TYR N H2 sing N N 352 TYR CA C sing N N 353 TYR CA CB sing N N 354 TYR CA HA sing N N 355 TYR C O doub N N 356 TYR C OXT sing N N 357 TYR CB CG sing N N 358 TYR CB HB2 sing N N 359 TYR CB HB3 sing N N 360 TYR CG CD1 doub Y N 361 TYR CG CD2 sing Y N 362 TYR CD1 CE1 sing Y N 363 TYR CD1 HD1 sing N N 364 TYR CD2 CE2 doub Y N 365 TYR CD2 HD2 sing N N 366 TYR CE1 CZ doub Y N 367 TYR CE1 HE1 sing N N 368 TYR CE2 CZ sing Y N 369 TYR CE2 HE2 sing N N 370 TYR CZ OH sing N N 371 TYR OH HH sing N N 372 TYR OXT HXT sing N N 373 VAL N CA sing N N 374 VAL N H sing N N 375 VAL N H2 sing N N 376 VAL CA C sing N N 377 VAL CA CB sing N N 378 VAL CA HA sing N N 379 VAL C O doub N N 380 VAL C OXT sing N N 381 VAL CB CG1 sing N N 382 VAL CB CG2 sing N N 383 VAL CB HB sing N N 384 VAL CG1 HG11 sing N N 385 VAL CG1 HG12 sing N N 386 VAL CG1 HG13 sing N N 387 VAL CG2 HG21 sing N N 388 VAL CG2 HG22 sing N N 389 VAL CG2 HG23 sing N N 390 VAL OXT HXT sing N N 391 # _pdbx_audit_support.funding_organization 'Ministry of Science and Technology' _pdbx_audit_support.country Taiwan _pdbx_audit_support.grant_number 105-2311-B-213-001-MY3 _pdbx_audit_support.ordinal 1 # _atom_sites.entry_id 5YKX _atom_sites.fract_transf_matrix[1][1] 0.007453 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.007453 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007453 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CD N O S SE # loop_