data_5YKZ # _entry.id 5YKZ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5YKZ pdb_00005ykz 10.2210/pdb5ykz/pdb WWPDB D_1300005466 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2018-10-24 2 'Structure model' 1 1 2018-11-07 3 'Structure model' 1 2 2019-02-27 4 'Structure model' 1 3 2019-03-13 5 'Structure model' 1 4 2024-03-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Structure summary' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Database references' 7 5 'Structure model' 'Data collection' 8 5 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' struct 2 3 'Structure model' citation 3 3 'Structure model' citation_author 4 4 'Structure model' citation 5 4 'Structure model' citation_author 6 5 'Structure model' chem_comp_atom 7 5 'Structure model' chem_comp_bond 8 5 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_struct.title' 2 3 'Structure model' '_citation.country' 3 3 'Structure model' '_citation.journal_abbrev' 4 3 'Structure model' '_citation.journal_id_CSD' 5 3 'Structure model' '_citation.journal_id_ISSN' 6 3 'Structure model' '_citation.journal_volume' 7 3 'Structure model' '_citation.pdbx_database_id_DOI' 8 3 'Structure model' '_citation.title' 9 3 'Structure model' '_citation.year' 10 4 'Structure model' '_citation.page_first' 11 4 'Structure model' '_citation.page_last' 12 4 'Structure model' '_citation.pdbx_database_id_PubMed' 13 4 'Structure model' '_citation.title' 14 4 'Structure model' '_citation_author.identifier_ORCID' 15 5 'Structure model' '_database_2.pdbx_DOI' 16 5 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5YKZ _pdbx_database_status.recvd_initial_deposition_date 2017-10-16 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Chen, N.C.' 1 ? 'Yoshimura, M.' 2 ? 'Lin, C.C.' 3 ? 'Guan, H.H.' 4 ? 'Chuankhayan, P.' 5 ? 'Chen, C.J.' 6 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Commun Biol' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2399-3642 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 2 _citation.language ? _citation.page_first 72 _citation.page_last 72 _citation.title 'The atomic structures of shrimp nodaviruses reveal new dimeric spike structures and particle polymorphism.' _citation.year 2019 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s42003-019-0311-z _citation.pdbx_database_id_PubMed 30820467 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Chen, N.C.' 1 ? primary 'Yoshimura, M.' 2 0000-0002-7466-2192 primary 'Miyazaki, N.' 3 ? primary 'Guan, H.H.' 4 ? primary 'Chuankhayan, P.' 5 ? primary 'Lin, C.C.' 6 ? primary 'Chen, S.K.' 7 ? primary 'Lin, P.J.' 8 ? primary 'Huang, Y.C.' 9 ? primary 'Iwasaki, K.' 10 ? primary 'Nakagawa, A.' 11 0000-0002-1700-7861 primary 'Chan, S.I.' 12 ? primary 'Chen, C.J.' 13 0000-0002-5157-4288 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Capsid protein' 12558.083 2 ? ? 'UNP residues 250-368' ? 2 water nat water 18.015 414 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;NPTSLTDVRVDKAVNFIKPEVSGVAEIQTVTGLSPSTSYLLTPAFLEQNFQSEAGIYILSATPVEGEGTISINMDPTVTT VSGFIKVKTDTFGTFDLSVVLTTASKKQTTGFNIIAATS ; _entity_poly.pdbx_seq_one_letter_code_can ;NPTSLTDVRVDKAVNFIKPEVSGVAEIQTVTGLSPSTSYLLTPAFLEQNFQSEAGIYILSATPVEGEGTISINMDPTVTT VSGFIKVKTDTFGTFDLSVVLTTASKKQTTGFNIIAATS ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ASN n 1 2 PRO n 1 3 THR n 1 4 SER n 1 5 LEU n 1 6 THR n 1 7 ASP n 1 8 VAL n 1 9 ARG n 1 10 VAL n 1 11 ASP n 1 12 LYS n 1 13 ALA n 1 14 VAL n 1 15 ASN n 1 16 PHE n 1 17 ILE n 1 18 LYS n 1 19 PRO n 1 20 GLU n 1 21 VAL n 1 22 SER n 1 23 GLY n 1 24 VAL n 1 25 ALA n 1 26 GLU n 1 27 ILE n 1 28 GLN n 1 29 THR n 1 30 VAL n 1 31 THR n 1 32 GLY n 1 33 LEU n 1 34 SER n 1 35 PRO n 1 36 SER n 1 37 THR n 1 38 SER n 1 39 TYR n 1 40 LEU n 1 41 LEU n 1 42 THR n 1 43 PRO n 1 44 ALA n 1 45 PHE n 1 46 LEU n 1 47 GLU n 1 48 GLN n 1 49 ASN n 1 50 PHE n 1 51 GLN n 1 52 SER n 1 53 GLU n 1 54 ALA n 1 55 GLY n 1 56 ILE n 1 57 TYR n 1 58 ILE n 1 59 LEU n 1 60 SER n 1 61 ALA n 1 62 THR n 1 63 PRO n 1 64 VAL n 1 65 GLU n 1 66 GLY n 1 67 GLU n 1 68 GLY n 1 69 THR n 1 70 ILE n 1 71 SER n 1 72 ILE n 1 73 ASN n 1 74 MET n 1 75 ASP n 1 76 PRO n 1 77 THR n 1 78 VAL n 1 79 THR n 1 80 THR n 1 81 VAL n 1 82 SER n 1 83 GLY n 1 84 PHE n 1 85 ILE n 1 86 LYS n 1 87 VAL n 1 88 LYS n 1 89 THR n 1 90 ASP n 1 91 THR n 1 92 PHE n 1 93 GLY n 1 94 THR n 1 95 PHE n 1 96 ASP n 1 97 LEU n 1 98 SER n 1 99 VAL n 1 100 VAL n 1 101 LEU n 1 102 THR n 1 103 THR n 1 104 ALA n 1 105 SER n 1 106 LYS n 1 107 LYS n 1 108 GLN n 1 109 THR n 1 110 THR n 1 111 GLY n 1 112 PHE n 1 113 ASN n 1 114 ILE n 1 115 ILE n 1 116 ALA n 1 117 ALA n 1 118 THR n 1 119 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 119 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Penaeus vannamei nodavirus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 430911 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ASN 1 1 ? ? ? A . n A 1 2 PRO 2 2 ? ? ? A . n A 1 3 THR 3 3 ? ? ? A . n A 1 4 SER 4 4 ? ? ? A . n A 1 5 LEU 5 5 ? ? ? A . n A 1 6 THR 6 6 ? ? ? A . n A 1 7 ASP 7 7 7 ASP ASP A . n A 1 8 VAL 8 8 8 VAL VAL A . n A 1 9 ARG 9 9 9 ARG ARG A . n A 1 10 VAL 10 10 10 VAL VAL A . n A 1 11 ASP 11 11 11 ASP ASP A . n A 1 12 LYS 12 12 12 LYS LYS A . n A 1 13 ALA 13 13 13 ALA ALA A . n A 1 14 VAL 14 14 14 VAL VAL A . n A 1 15 ASN 15 15 15 ASN ASN A . n A 1 16 PHE 16 16 16 PHE PHE A . n A 1 17 ILE 17 17 17 ILE ILE A . n A 1 18 LYS 18 18 18 LYS LYS A . n A 1 19 PRO 19 19 19 PRO PRO A . n A 1 20 GLU 20 20 20 GLU GLU A . n A 1 21 VAL 21 21 21 VAL VAL A . n A 1 22 SER 22 22 22 SER SER A . n A 1 23 GLY 23 23 23 GLY GLY A . n A 1 24 VAL 24 24 24 VAL VAL A . n A 1 25 ALA 25 25 25 ALA ALA A . n A 1 26 GLU 26 26 26 GLU GLU A . n A 1 27 ILE 27 27 27 ILE ILE A . n A 1 28 GLN 28 28 28 GLN GLN A . n A 1 29 THR 29 29 29 THR THR A . n A 1 30 VAL 30 30 30 VAL VAL A . n A 1 31 THR 31 31 31 THR THR A . n A 1 32 GLY 32 32 32 GLY GLY A . n A 1 33 LEU 33 33 33 LEU LEU A . n A 1 34 SER 34 34 34 SER SER A . n A 1 35 PRO 35 35 35 PRO PRO A . n A 1 36 SER 36 36 36 SER SER A . n A 1 37 THR 37 37 37 THR THR A . n A 1 38 SER 38 38 38 SER SER A . n A 1 39 TYR 39 39 39 TYR TYR A . n A 1 40 LEU 40 40 40 LEU LEU A . n A 1 41 LEU 41 41 41 LEU LEU A . n A 1 42 THR 42 42 42 THR THR A . n A 1 43 PRO 43 43 43 PRO PRO A . n A 1 44 ALA 44 44 44 ALA ALA A . n A 1 45 PHE 45 45 45 PHE PHE A . n A 1 46 LEU 46 46 46 LEU LEU A . n A 1 47 GLU 47 47 47 GLU GLU A . n A 1 48 GLN 48 48 48 GLN GLN A . n A 1 49 ASN 49 49 49 ASN ASN A . n A 1 50 PHE 50 50 50 PHE PHE A . n A 1 51 GLN 51 51 51 GLN GLN A . n A 1 52 SER 52 52 52 SER SER A . n A 1 53 GLU 53 53 53 GLU GLU A . n A 1 54 ALA 54 54 54 ALA ALA A . n A 1 55 GLY 55 55 55 GLY GLY A . n A 1 56 ILE 56 56 56 ILE ILE A . n A 1 57 TYR 57 57 57 TYR TYR A . n A 1 58 ILE 58 58 58 ILE ILE A . n A 1 59 LEU 59 59 59 LEU LEU A . n A 1 60 SER 60 60 60 SER SER A . n A 1 61 ALA 61 61 61 ALA ALA A . n A 1 62 THR 62 62 62 THR THR A . n A 1 63 PRO 63 63 63 PRO PRO A . n A 1 64 VAL 64 64 64 VAL VAL A . n A 1 65 GLU 65 65 65 GLU GLU A . n A 1 66 GLY 66 66 66 GLY GLY A . n A 1 67 GLU 67 67 67 GLU GLU A . n A 1 68 GLY 68 68 68 GLY GLY A . n A 1 69 THR 69 69 69 THR THR A . n A 1 70 ILE 70 70 70 ILE ILE A . n A 1 71 SER 71 71 71 SER SER A . n A 1 72 ILE 72 72 72 ILE ILE A . n A 1 73 ASN 73 73 73 ASN ASN A . n A 1 74 MET 74 74 74 MET MET A . n A 1 75 ASP 75 75 75 ASP ASP A . n A 1 76 PRO 76 76 76 PRO PRO A . n A 1 77 THR 77 77 77 THR THR A . n A 1 78 VAL 78 78 78 VAL VAL A . n A 1 79 THR 79 79 79 THR THR A . n A 1 80 THR 80 80 80 THR THR A . n A 1 81 VAL 81 81 81 VAL VAL A . n A 1 82 SER 82 82 82 SER SER A . n A 1 83 GLY 83 83 83 GLY GLY A . n A 1 84 PHE 84 84 84 PHE PHE A . n A 1 85 ILE 85 85 85 ILE ILE A . n A 1 86 LYS 86 86 86 LYS LYS A . n A 1 87 VAL 87 87 87 VAL VAL A . n A 1 88 LYS 88 88 88 LYS LYS A . n A 1 89 THR 89 89 89 THR THR A . n A 1 90 ASP 90 90 90 ASP ASP A . n A 1 91 THR 91 91 91 THR THR A . n A 1 92 PHE 92 92 92 PHE PHE A . n A 1 93 GLY 93 93 93 GLY GLY A . n A 1 94 THR 94 94 94 THR THR A . n A 1 95 PHE 95 95 95 PHE PHE A . n A 1 96 ASP 96 96 96 ASP ASP A . n A 1 97 LEU 97 97 97 LEU LEU A . n A 1 98 SER 98 98 98 SER SER A . n A 1 99 VAL 99 99 99 VAL VAL A . n A 1 100 VAL 100 100 100 VAL VAL A . n A 1 101 LEU 101 101 101 LEU LEU A . n A 1 102 THR 102 102 102 THR THR A . n A 1 103 THR 103 103 103 THR THR A . n A 1 104 ALA 104 104 104 ALA ALA A . n A 1 105 SER 105 105 105 SER SER A . n A 1 106 LYS 106 106 106 LYS LYS A . n A 1 107 LYS 107 107 107 LYS LYS A . n A 1 108 GLN 108 108 108 GLN GLN A . n A 1 109 THR 109 109 109 THR THR A . n A 1 110 THR 110 110 110 THR THR A . n A 1 111 GLY 111 111 111 GLY GLY A . n A 1 112 PHE 112 112 112 PHE PHE A . n A 1 113 ASN 113 113 113 ASN ASN A . n A 1 114 ILE 114 114 114 ILE ILE A . n A 1 115 ILE 115 115 115 ILE ILE A . n A 1 116 ALA 116 116 116 ALA ALA A . n A 1 117 ALA 117 117 117 ALA ALA A . n A 1 118 THR 118 118 118 THR THR A . n A 1 119 SER 119 119 ? ? ? A . n B 1 1 ASN 1 1 ? ? ? B . n B 1 2 PRO 2 2 ? ? ? B . n B 1 3 THR 3 3 ? ? ? B . n B 1 4 SER 4 4 ? ? ? B . n B 1 5 LEU 5 5 ? ? ? B . n B 1 6 THR 6 6 6 THR THR B . n B 1 7 ASP 7 7 7 ASP ASP B . n B 1 8 VAL 8 8 8 VAL VAL B . n B 1 9 ARG 9 9 9 ARG ARG B . n B 1 10 VAL 10 10 10 VAL VAL B . n B 1 11 ASP 11 11 11 ASP ASP B . n B 1 12 LYS 12 12 12 LYS LYS B . n B 1 13 ALA 13 13 13 ALA ALA B . n B 1 14 VAL 14 14 14 VAL VAL B . n B 1 15 ASN 15 15 15 ASN ASN B . n B 1 16 PHE 16 16 16 PHE PHE B . n B 1 17 ILE 17 17 17 ILE ILE B . n B 1 18 LYS 18 18 18 LYS LYS B . n B 1 19 PRO 19 19 19 PRO PRO B . n B 1 20 GLU 20 20 20 GLU GLU B . n B 1 21 VAL 21 21 21 VAL VAL B . n B 1 22 SER 22 22 22 SER SER B . n B 1 23 GLY 23 23 23 GLY GLY B . n B 1 24 VAL 24 24 24 VAL VAL B . n B 1 25 ALA 25 25 25 ALA ALA B . n B 1 26 GLU 26 26 26 GLU GLU B . n B 1 27 ILE 27 27 27 ILE ILE B . n B 1 28 GLN 28 28 28 GLN GLN B . n B 1 29 THR 29 29 29 THR THR B . n B 1 30 VAL 30 30 30 VAL VAL B . n B 1 31 THR 31 31 31 THR THR B . n B 1 32 GLY 32 32 32 GLY GLY B . n B 1 33 LEU 33 33 33 LEU LEU B . n B 1 34 SER 34 34 34 SER SER B . n B 1 35 PRO 35 35 35 PRO PRO B . n B 1 36 SER 36 36 36 SER SER B . n B 1 37 THR 37 37 37 THR THR B . n B 1 38 SER 38 38 38 SER SER B . n B 1 39 TYR 39 39 39 TYR TYR B . n B 1 40 LEU 40 40 40 LEU LEU B . n B 1 41 LEU 41 41 41 LEU LEU B . n B 1 42 THR 42 42 42 THR THR B . n B 1 43 PRO 43 43 43 PRO PRO B . n B 1 44 ALA 44 44 44 ALA ALA B . n B 1 45 PHE 45 45 45 PHE PHE B . n B 1 46 LEU 46 46 46 LEU LEU B . n B 1 47 GLU 47 47 47 GLU GLU B . n B 1 48 GLN 48 48 48 GLN GLN B . n B 1 49 ASN 49 49 49 ASN ASN B . n B 1 50 PHE 50 50 50 PHE PHE B . n B 1 51 GLN 51 51 51 GLN GLN B . n B 1 52 SER 52 52 52 SER SER B . n B 1 53 GLU 53 53 53 GLU GLU B . n B 1 54 ALA 54 54 54 ALA ALA B . n B 1 55 GLY 55 55 55 GLY GLY B . n B 1 56 ILE 56 56 56 ILE ILE B . n B 1 57 TYR 57 57 57 TYR TYR B . n B 1 58 ILE 58 58 58 ILE ILE B . n B 1 59 LEU 59 59 59 LEU LEU B . n B 1 60 SER 60 60 60 SER SER B . n B 1 61 ALA 61 61 61 ALA ALA B . n B 1 62 THR 62 62 62 THR THR B . n B 1 63 PRO 63 63 63 PRO PRO B . n B 1 64 VAL 64 64 64 VAL VAL B . n B 1 65 GLU 65 65 65 GLU GLU B . n B 1 66 GLY 66 66 66 GLY GLY B . n B 1 67 GLU 67 67 67 GLU GLU B . n B 1 68 GLY 68 68 68 GLY GLY B . n B 1 69 THR 69 69 69 THR THR B . n B 1 70 ILE 70 70 70 ILE ILE B . n B 1 71 SER 71 71 71 SER SER B . n B 1 72 ILE 72 72 72 ILE ILE B . n B 1 73 ASN 73 73 73 ASN ASN B . n B 1 74 MET 74 74 74 MET MET B . n B 1 75 ASP 75 75 75 ASP ASP B . n B 1 76 PRO 76 76 76 PRO PRO B . n B 1 77 THR 77 77 77 THR THR B . n B 1 78 VAL 78 78 78 VAL VAL B . n B 1 79 THR 79 79 79 THR THR B . n B 1 80 THR 80 80 80 THR THR B . n B 1 81 VAL 81 81 81 VAL VAL B . n B 1 82 SER 82 82 82 SER SER B . n B 1 83 GLY 83 83 83 GLY GLY B . n B 1 84 PHE 84 84 84 PHE PHE B . n B 1 85 ILE 85 85 85 ILE ILE B . n B 1 86 LYS 86 86 86 LYS LYS B . n B 1 87 VAL 87 87 87 VAL VAL B . n B 1 88 LYS 88 88 88 LYS LYS B . n B 1 89 THR 89 89 89 THR THR B . n B 1 90 ASP 90 90 90 ASP ASP B . n B 1 91 THR 91 91 91 THR THR B . n B 1 92 PHE 92 92 92 PHE PHE B . n B 1 93 GLY 93 93 93 GLY GLY B . n B 1 94 THR 94 94 94 THR THR B . n B 1 95 PHE 95 95 95 PHE PHE B . n B 1 96 ASP 96 96 96 ASP ASP B . n B 1 97 LEU 97 97 97 LEU LEU B . n B 1 98 SER 98 98 98 SER SER B . n B 1 99 VAL 99 99 99 VAL VAL B . n B 1 100 VAL 100 100 100 VAL VAL B . n B 1 101 LEU 101 101 101 LEU LEU B . n B 1 102 THR 102 102 102 THR THR B . n B 1 103 THR 103 103 103 THR THR B . n B 1 104 ALA 104 104 104 ALA ALA B . n B 1 105 SER 105 105 105 SER SER B . n B 1 106 LYS 106 106 106 LYS LYS B . n B 1 107 LYS 107 107 107 LYS LYS B . n B 1 108 GLN 108 108 108 GLN GLN B . n B 1 109 THR 109 109 109 THR THR B . n B 1 110 THR 110 110 110 THR THR B . n B 1 111 GLY 111 111 111 GLY GLY B . n B 1 112 PHE 112 112 112 PHE PHE B . n B 1 113 ASN 113 113 113 ASN ASN B . n B 1 114 ILE 114 114 114 ILE ILE B . n B 1 115 ILE 115 115 115 ILE ILE B . n B 1 116 ALA 116 116 116 ALA ALA B . n B 1 117 ALA 117 117 117 ALA ALA B . n B 1 118 THR 118 118 118 THR THR B . n B 1 119 SER 119 119 119 SER SER B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HOH 1 201 388 HOH HOH A . C 2 HOH 2 202 306 HOH HOH A . C 2 HOH 3 203 398 HOH HOH A . C 2 HOH 4 204 155 HOH HOH A . C 2 HOH 5 205 236 HOH HOH A . C 2 HOH 6 206 162 HOH HOH A . C 2 HOH 7 207 117 HOH HOH A . C 2 HOH 8 208 141 HOH HOH A . C 2 HOH 9 209 106 HOH HOH A . C 2 HOH 10 210 15 HOH HOH A . C 2 HOH 11 211 153 HOH HOH A . C 2 HOH 12 212 172 HOH HOH A . C 2 HOH 13 213 163 HOH HOH A . C 2 HOH 14 214 277 HOH HOH A . C 2 HOH 15 215 75 HOH HOH A . C 2 HOH 16 216 36 HOH HOH A . C 2 HOH 17 217 182 HOH HOH A . C 2 HOH 18 218 33 HOH HOH A . C 2 HOH 19 219 59 HOH HOH A . C 2 HOH 20 220 28 HOH HOH A . C 2 HOH 21 221 145 HOH HOH A . C 2 HOH 22 222 60 HOH HOH A . C 2 HOH 23 223 25 HOH HOH A . C 2 HOH 24 224 29 HOH HOH A . C 2 HOH 25 225 27 HOH HOH A . C 2 HOH 26 226 250 HOH HOH A . C 2 HOH 27 227 70 HOH HOH A . C 2 HOH 28 228 20 HOH HOH A . C 2 HOH 29 229 64 HOH HOH A . C 2 HOH 30 230 400 HOH HOH A . C 2 HOH 31 231 273 HOH HOH A . C 2 HOH 32 232 57 HOH HOH A . C 2 HOH 33 233 336 HOH HOH A . C 2 HOH 34 234 296 HOH HOH A . C 2 HOH 35 235 238 HOH HOH A . C 2 HOH 36 236 4 HOH HOH A . C 2 HOH 37 237 180 HOH HOH A . C 2 HOH 38 238 382 HOH HOH A . C 2 HOH 39 239 366 HOH HOH A . C 2 HOH 40 240 409 HOH HOH A . C 2 HOH 41 241 210 HOH HOH A . C 2 HOH 42 242 116 HOH HOH A . C 2 HOH 43 243 108 HOH HOH A . C 2 HOH 44 244 45 HOH HOH A . C 2 HOH 45 245 123 HOH HOH A . C 2 HOH 46 246 19 HOH HOH A . C 2 HOH 47 247 5 HOH HOH A . C 2 HOH 48 248 394 HOH HOH A . C 2 HOH 49 249 124 HOH HOH A . C 2 HOH 50 250 41 HOH HOH A . C 2 HOH 51 251 327 HOH HOH A . C 2 HOH 52 252 136 HOH HOH A . C 2 HOH 53 253 32 HOH HOH A . C 2 HOH 54 254 72 HOH HOH A . C 2 HOH 55 255 194 HOH HOH A . C 2 HOH 56 256 355 HOH HOH A . C 2 HOH 57 257 122 HOH HOH A . C 2 HOH 58 258 14 HOH HOH A . C 2 HOH 59 259 35 HOH HOH A . C 2 HOH 60 260 254 HOH HOH A . C 2 HOH 61 261 151 HOH HOH A . C 2 HOH 62 262 157 HOH HOH A . C 2 HOH 63 263 48 HOH HOH A . C 2 HOH 64 264 341 HOH HOH A . C 2 HOH 65 265 89 HOH HOH A . C 2 HOH 66 266 234 HOH HOH A . C 2 HOH 67 267 186 HOH HOH A . C 2 HOH 68 268 109 HOH HOH A . C 2 HOH 69 269 262 HOH HOH A . C 2 HOH 70 270 99 HOH HOH A . C 2 HOH 71 271 13 HOH HOH A . C 2 HOH 72 272 396 HOH HOH A . C 2 HOH 73 273 253 HOH HOH A . C 2 HOH 74 274 39 HOH HOH A . C 2 HOH 75 275 9 HOH HOH A . C 2 HOH 76 276 191 HOH HOH A . C 2 HOH 77 277 87 HOH HOH A . C 2 HOH 78 278 368 HOH HOH A . C 2 HOH 79 279 352 HOH HOH A . C 2 HOH 80 280 126 HOH HOH A . C 2 HOH 81 281 12 HOH HOH A . C 2 HOH 82 282 1 HOH HOH A . C 2 HOH 83 283 229 HOH HOH A . C 2 HOH 84 284 173 HOH HOH A . C 2 HOH 85 285 100 HOH HOH A . C 2 HOH 86 286 174 HOH HOH A . C 2 HOH 87 287 66 HOH HOH A . C 2 HOH 88 288 16 HOH HOH A . C 2 HOH 89 289 160 HOH HOH A . C 2 HOH 90 290 198 HOH HOH A . C 2 HOH 91 291 177 HOH HOH A . C 2 HOH 92 292 192 HOH HOH A . C 2 HOH 93 293 258 HOH HOH A . C 2 HOH 94 294 2 HOH HOH A . C 2 HOH 95 295 18 HOH HOH A . C 2 HOH 96 296 403 HOH HOH A . C 2 HOH 97 297 184 HOH HOH A . C 2 HOH 98 298 95 HOH HOH A . C 2 HOH 99 299 144 HOH HOH A . C 2 HOH 100 300 152 HOH HOH A . C 2 HOH 101 301 128 HOH HOH A . C 2 HOH 102 302 54 HOH HOH A . C 2 HOH 103 303 313 HOH HOH A . C 2 HOH 104 304 289 HOH HOH A . C 2 HOH 105 305 302 HOH HOH A . C 2 HOH 106 306 154 HOH HOH A . C 2 HOH 107 307 300 HOH HOH A . C 2 HOH 108 308 224 HOH HOH A . C 2 HOH 109 309 65 HOH HOH A . C 2 HOH 110 310 93 HOH HOH A . C 2 HOH 111 311 92 HOH HOH A . C 2 HOH 112 312 270 HOH HOH A . C 2 HOH 113 313 288 HOH HOH A . C 2 HOH 114 314 104 HOH HOH A . C 2 HOH 115 315 354 HOH HOH A . C 2 HOH 116 316 237 HOH HOH A . C 2 HOH 117 317 121 HOH HOH A . C 2 HOH 118 318 176 HOH HOH A . C 2 HOH 119 319 216 HOH HOH A . C 2 HOH 120 320 79 HOH HOH A . C 2 HOH 121 321 413 HOH HOH A . C 2 HOH 122 322 142 HOH HOH A . C 2 HOH 123 323 147 HOH HOH A . C 2 HOH 124 324 111 HOH HOH A . C 2 HOH 125 325 68 HOH HOH A . C 2 HOH 126 326 307 HOH HOH A . C 2 HOH 127 327 402 HOH HOH A . C 2 HOH 128 328 246 HOH HOH A . C 2 HOH 129 329 30 HOH HOH A . C 2 HOH 130 330 269 HOH HOH A . C 2 HOH 131 331 395 HOH HOH A . C 2 HOH 132 332 208 HOH HOH A . C 2 HOH 133 333 314 HOH HOH A . C 2 HOH 134 334 167 HOH HOH A . C 2 HOH 135 335 195 HOH HOH A . C 2 HOH 136 336 181 HOH HOH A . C 2 HOH 137 337 240 HOH HOH A . C 2 HOH 138 338 189 HOH HOH A . C 2 HOH 139 339 178 HOH HOH A . C 2 HOH 140 340 363 HOH HOH A . C 2 HOH 141 341 286 HOH HOH A . C 2 HOH 142 342 361 HOH HOH A . C 2 HOH 143 343 204 HOH HOH A . C 2 HOH 144 344 387 HOH HOH A . C 2 HOH 145 345 83 HOH HOH A . C 2 HOH 146 346 231 HOH HOH A . C 2 HOH 147 347 131 HOH HOH A . C 2 HOH 148 348 290 HOH HOH A . C 2 HOH 149 349 411 HOH HOH A . C 2 HOH 150 350 375 HOH HOH A . C 2 HOH 151 351 214 HOH HOH A . C 2 HOH 152 352 377 HOH HOH A . C 2 HOH 153 353 82 HOH HOH A . C 2 HOH 154 354 235 HOH HOH A . C 2 HOH 155 355 309 HOH HOH A . C 2 HOH 156 356 312 HOH HOH A . C 2 HOH 157 357 318 HOH HOH A . C 2 HOH 158 358 406 HOH HOH A . C 2 HOH 159 359 303 HOH HOH A . C 2 HOH 160 360 349 HOH HOH A . C 2 HOH 161 361 343 HOH HOH A . C 2 HOH 162 362 408 HOH HOH A . C 2 HOH 163 363 291 HOH HOH A . C 2 HOH 164 364 130 HOH HOH A . C 2 HOH 165 365 263 HOH HOH A . C 2 HOH 166 366 338 HOH HOH A . C 2 HOH 167 367 350 HOH HOH A . C 2 HOH 168 368 275 HOH HOH A . C 2 HOH 169 369 335 HOH HOH A . C 2 HOH 170 370 261 HOH HOH A . C 2 HOH 171 371 324 HOH HOH A . C 2 HOH 172 372 225 HOH HOH A . C 2 HOH 173 373 359 HOH HOH A . C 2 HOH 174 374 390 HOH HOH A . C 2 HOH 175 375 267 HOH HOH A . C 2 HOH 176 376 200 HOH HOH A . C 2 HOH 177 377 132 HOH HOH A . C 2 HOH 178 378 212 HOH HOH A . C 2 HOH 179 379 365 HOH HOH A . C 2 HOH 180 380 185 HOH HOH A . C 2 HOH 181 381 135 HOH HOH A . C 2 HOH 182 382 294 HOH HOH A . C 2 HOH 183 383 367 HOH HOH A . C 2 HOH 184 384 370 HOH HOH A . C 2 HOH 185 385 405 HOH HOH A . C 2 HOH 186 386 119 HOH HOH A . C 2 HOH 187 387 197 HOH HOH A . C 2 HOH 188 388 219 HOH HOH A . C 2 HOH 189 389 376 HOH HOH A . C 2 HOH 190 390 412 HOH HOH A . C 2 HOH 191 391 381 HOH HOH A . C 2 HOH 192 392 310 HOH HOH A . C 2 HOH 193 393 249 HOH HOH A . C 2 HOH 194 394 407 HOH HOH A . C 2 HOH 195 395 393 HOH HOH A . C 2 HOH 196 396 399 HOH HOH A . C 2 HOH 197 397 205 HOH HOH A . C 2 HOH 198 398 346 HOH HOH A . C 2 HOH 199 399 207 HOH HOH A . C 2 HOH 200 400 391 HOH HOH A . D 2 HOH 1 201 259 HOH HOH B . D 2 HOH 2 202 76 HOH HOH B . D 2 HOH 3 203 344 HOH HOH B . D 2 HOH 4 204 223 HOH HOH B . D 2 HOH 5 205 373 HOH HOH B . D 2 HOH 6 206 333 HOH HOH B . D 2 HOH 7 207 125 HOH HOH B . D 2 HOH 8 208 239 HOH HOH B . D 2 HOH 9 209 251 HOH HOH B . D 2 HOH 10 210 10 HOH HOH B . D 2 HOH 11 211 213 HOH HOH B . D 2 HOH 12 212 58 HOH HOH B . D 2 HOH 13 213 196 HOH HOH B . D 2 HOH 14 214 17 HOH HOH B . D 2 HOH 15 215 241 HOH HOH B . D 2 HOH 16 216 242 HOH HOH B . D 2 HOH 17 217 168 HOH HOH B . D 2 HOH 18 218 315 HOH HOH B . D 2 HOH 19 219 107 HOH HOH B . D 2 HOH 20 220 247 HOH HOH B . D 2 HOH 21 221 285 HOH HOH B . D 2 HOH 22 222 31 HOH HOH B . D 2 HOH 23 223 265 HOH HOH B . D 2 HOH 24 224 118 HOH HOH B . D 2 HOH 25 225 50 HOH HOH B . D 2 HOH 26 226 78 HOH HOH B . D 2 HOH 27 227 94 HOH HOH B . D 2 HOH 28 228 53 HOH HOH B . D 2 HOH 29 229 46 HOH HOH B . D 2 HOH 30 230 146 HOH HOH B . D 2 HOH 31 231 378 HOH HOH B . D 2 HOH 32 232 52 HOH HOH B . D 2 HOH 33 233 133 HOH HOH B . D 2 HOH 34 234 71 HOH HOH B . D 2 HOH 35 235 23 HOH HOH B . D 2 HOH 36 236 42 HOH HOH B . D 2 HOH 37 237 166 HOH HOH B . D 2 HOH 38 238 102 HOH HOH B . D 2 HOH 39 239 77 HOH HOH B . D 2 HOH 40 240 85 HOH HOH B . D 2 HOH 41 241 143 HOH HOH B . D 2 HOH 42 242 110 HOH HOH B . D 2 HOH 43 243 360 HOH HOH B . D 2 HOH 44 244 114 HOH HOH B . D 2 HOH 45 245 88 HOH HOH B . D 2 HOH 46 246 67 HOH HOH B . D 2 HOH 47 247 278 HOH HOH B . D 2 HOH 48 248 179 HOH HOH B . D 2 HOH 49 249 38 HOH HOH B . D 2 HOH 50 250 127 HOH HOH B . D 2 HOH 51 251 11 HOH HOH B . D 2 HOH 52 252 284 HOH HOH B . D 2 HOH 53 253 103 HOH HOH B . D 2 HOH 54 254 281 HOH HOH B . D 2 HOH 55 255 201 HOH HOH B . D 2 HOH 56 256 44 HOH HOH B . D 2 HOH 57 257 51 HOH HOH B . D 2 HOH 58 258 34 HOH HOH B . D 2 HOH 59 259 159 HOH HOH B . D 2 HOH 60 260 158 HOH HOH B . D 2 HOH 61 261 203 HOH HOH B . D 2 HOH 62 262 345 HOH HOH B . D 2 HOH 63 263 81 HOH HOH B . D 2 HOH 64 264 321 HOH HOH B . D 2 HOH 65 265 22 HOH HOH B . D 2 HOH 66 266 73 HOH HOH B . D 2 HOH 67 267 129 HOH HOH B . D 2 HOH 68 268 74 HOH HOH B . D 2 HOH 69 269 337 HOH HOH B . D 2 HOH 70 270 24 HOH HOH B . D 2 HOH 71 271 339 HOH HOH B . D 2 HOH 72 272 272 HOH HOH B . D 2 HOH 73 273 138 HOH HOH B . D 2 HOH 74 274 280 HOH HOH B . D 2 HOH 75 275 188 HOH HOH B . D 2 HOH 76 276 170 HOH HOH B . D 2 HOH 77 277 202 HOH HOH B . D 2 HOH 78 278 120 HOH HOH B . D 2 HOH 79 279 86 HOH HOH B . D 2 HOH 80 280 37 HOH HOH B . D 2 HOH 81 281 3 HOH HOH B . D 2 HOH 82 282 6 HOH HOH B . D 2 HOH 83 283 211 HOH HOH B . D 2 HOH 84 284 97 HOH HOH B . D 2 HOH 85 285 8 HOH HOH B . D 2 HOH 86 286 43 HOH HOH B . D 2 HOH 87 287 244 HOH HOH B . D 2 HOH 88 288 183 HOH HOH B . D 2 HOH 89 289 392 HOH HOH B . D 2 HOH 90 290 98 HOH HOH B . D 2 HOH 91 291 175 HOH HOH B . D 2 HOH 92 292 47 HOH HOH B . D 2 HOH 93 293 56 HOH HOH B . D 2 HOH 94 294 137 HOH HOH B . D 2 HOH 95 295 320 HOH HOH B . D 2 HOH 96 296 161 HOH HOH B . D 2 HOH 97 297 169 HOH HOH B . D 2 HOH 98 298 356 HOH HOH B . D 2 HOH 99 299 357 HOH HOH B . D 2 HOH 100 300 148 HOH HOH B . D 2 HOH 101 301 91 HOH HOH B . D 2 HOH 102 302 61 HOH HOH B . D 2 HOH 103 303 187 HOH HOH B . D 2 HOH 104 304 374 HOH HOH B . D 2 HOH 105 305 371 HOH HOH B . D 2 HOH 106 306 282 HOH HOH B . D 2 HOH 107 307 287 HOH HOH B . D 2 HOH 108 308 40 HOH HOH B . D 2 HOH 109 309 55 HOH HOH B . D 2 HOH 110 310 301 HOH HOH B . D 2 HOH 111 311 112 HOH HOH B . D 2 HOH 112 312 316 HOH HOH B . D 2 HOH 113 313 386 HOH HOH B . D 2 HOH 114 314 101 HOH HOH B . D 2 HOH 115 315 164 HOH HOH B . D 2 HOH 116 316 80 HOH HOH B . D 2 HOH 117 317 334 HOH HOH B . D 2 HOH 118 318 322 HOH HOH B . D 2 HOH 119 319 165 HOH HOH B . D 2 HOH 120 320 276 HOH HOH B . D 2 HOH 121 321 255 HOH HOH B . D 2 HOH 122 322 105 HOH HOH B . D 2 HOH 123 323 150 HOH HOH B . D 2 HOH 124 324 209 HOH HOH B . D 2 HOH 125 325 69 HOH HOH B . D 2 HOH 126 326 140 HOH HOH B . D 2 HOH 127 327 26 HOH HOH B . D 2 HOH 128 328 63 HOH HOH B . D 2 HOH 129 329 62 HOH HOH B . D 2 HOH 130 330 364 HOH HOH B . D 2 HOH 131 331 139 HOH HOH B . D 2 HOH 132 332 328 HOH HOH B . D 2 HOH 133 333 84 HOH HOH B . D 2 HOH 134 334 266 HOH HOH B . D 2 HOH 135 335 220 HOH HOH B . D 2 HOH 136 336 90 HOH HOH B . D 2 HOH 137 337 362 HOH HOH B . D 2 HOH 138 338 199 HOH HOH B . D 2 HOH 139 339 49 HOH HOH B . D 2 HOH 140 340 305 HOH HOH B . D 2 HOH 141 341 292 HOH HOH B . D 2 HOH 142 342 206 HOH HOH B . D 2 HOH 143 343 293 HOH HOH B . D 2 HOH 144 344 351 HOH HOH B . D 2 HOH 145 345 260 HOH HOH B . D 2 HOH 146 346 7 HOH HOH B . D 2 HOH 147 347 248 HOH HOH B . D 2 HOH 148 348 21 HOH HOH B . D 2 HOH 149 349 215 HOH HOH B . D 2 HOH 150 350 379 HOH HOH B . D 2 HOH 151 351 340 HOH HOH B . D 2 HOH 152 352 156 HOH HOH B . D 2 HOH 153 353 217 HOH HOH B . D 2 HOH 154 354 171 HOH HOH B . D 2 HOH 155 355 353 HOH HOH B . D 2 HOH 156 356 271 HOH HOH B . D 2 HOH 157 357 384 HOH HOH B . D 2 HOH 158 358 414 HOH HOH B . D 2 HOH 159 359 264 HOH HOH B . D 2 HOH 160 360 347 HOH HOH B . D 2 HOH 161 361 221 HOH HOH B . D 2 HOH 162 362 228 HOH HOH B . D 2 HOH 163 363 397 HOH HOH B . D 2 HOH 164 364 230 HOH HOH B . D 2 HOH 165 365 233 HOH HOH B . D 2 HOH 166 366 243 HOH HOH B . D 2 HOH 167 367 323 HOH HOH B . D 2 HOH 168 368 389 HOH HOH B . D 2 HOH 169 369 348 HOH HOH B . D 2 HOH 170 370 134 HOH HOH B . D 2 HOH 171 371 257 HOH HOH B . D 2 HOH 172 372 274 HOH HOH B . D 2 HOH 173 373 227 HOH HOH B . D 2 HOH 174 374 329 HOH HOH B . D 2 HOH 175 375 326 HOH HOH B . D 2 HOH 176 376 311 HOH HOH B . D 2 HOH 177 377 222 HOH HOH B . D 2 HOH 178 378 113 HOH HOH B . D 2 HOH 179 379 308 HOH HOH B . D 2 HOH 180 380 283 HOH HOH B . D 2 HOH 181 381 319 HOH HOH B . D 2 HOH 182 382 342 HOH HOH B . D 2 HOH 183 383 232 HOH HOH B . D 2 HOH 184 384 297 HOH HOH B . D 2 HOH 185 385 226 HOH HOH B . D 2 HOH 186 386 304 HOH HOH B . D 2 HOH 187 387 190 HOH HOH B . D 2 HOH 188 388 115 HOH HOH B . D 2 HOH 189 389 317 HOH HOH B . D 2 HOH 190 390 385 HOH HOH B . D 2 HOH 191 391 295 HOH HOH B . D 2 HOH 192 392 298 HOH HOH B . D 2 HOH 193 393 193 HOH HOH B . D 2 HOH 194 394 149 HOH HOH B . D 2 HOH 195 395 330 HOH HOH B . D 2 HOH 196 396 410 HOH HOH B . D 2 HOH 197 397 252 HOH HOH B . D 2 HOH 198 398 218 HOH HOH B . D 2 HOH 199 399 96 HOH HOH B . D 2 HOH 200 400 299 HOH HOH B . D 2 HOH 201 401 331 HOH HOH B . D 2 HOH 202 402 372 HOH HOH B . D 2 HOH 203 403 404 HOH HOH B . D 2 HOH 204 404 256 HOH HOH B . D 2 HOH 205 405 358 HOH HOH B . D 2 HOH 206 406 383 HOH HOH B . D 2 HOH 207 407 332 HOH HOH B . D 2 HOH 208 408 245 HOH HOH B . D 2 HOH 209 409 380 HOH HOH B . D 2 HOH 210 410 401 HOH HOH B . D 2 HOH 211 411 325 HOH HOH B . D 2 HOH 212 412 268 HOH HOH B . D 2 HOH 213 413 369 HOH HOH B . D 2 HOH 214 414 279 HOH HOH B . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.7.0032 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 4 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 109.38 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 5YKZ _cell.details ? _cell.formula_units_Z ? _cell.length_a 42.600 _cell.length_a_esd ? _cell.length_b 53.192 _cell.length_b_esd ? _cell.length_c 46.072 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5YKZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5YKZ _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.06 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 40.29 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '30%(w/v) Polyethylene glycol 4,000, 100mM MES, pH 6.5' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'RAYONIX MX300HE' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2015-05-23 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9790 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'NSRRC BEAMLINE BL15A1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9790 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL15A1 _diffrn_source.pdbx_synchrotron_site NSRRC # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5YKZ _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.17 _reflns.d_resolution_low 30 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 65509 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.1 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 4.6 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value 0.077 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 17.9 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.088 _reflns.pdbx_Rpim_I_all 0.041 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.17 _reflns_shell.d_res_low 1.21 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all 92.4 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 4.3 _reflns_shell.pdbx_Rsym_value 0.410 _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all 0.467 _reflns_shell.pdbx_Rpim_I_all 0.220 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.859 _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] -0.03 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.04 _refine.aniso_B[2][2] -0.17 _refine.aniso_B[2][3] -0.00 _refine.aniso_B[3][3] 0.15 _refine.B_iso_max ? _refine.B_iso_mean 17.767 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.980 _refine.correlation_coeff_Fo_to_Fc_free 0.976 _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5YKZ _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.17 _refine.ls_d_res_low 22.50 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 58534 _refine.ls_number_reflns_R_free 2910 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 94.42 _refine.ls_percent_reflns_R_free 4.7 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.15159 _refine.ls_R_factor_R_free 0.16984 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.15069 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.037 _refine.pdbx_overall_ESU_R_Free 0.039 _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 0.563 _refine.overall_SU_ML 0.027 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id 1 _refine_hist.pdbx_number_atoms_protein 1681 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 414 _refine_hist.number_atoms_total 2095 _refine_hist.d_res_high 1.17 _refine_hist.d_res_low 22.50 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.027 0.020 1707 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.001 0.020 1646 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 2.117 1.965 2330 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 0.896 3.000 3806 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? 7.161 5.000 224 ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? 31.076 26.207 58 ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? 9.692 15.000 280 ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? 10.703 15.000 2 ? r_dihedral_angle_4_deg ? ? 'X-RAY DIFFRACTION' ? 0.144 0.200 301 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.010 0.021 1902 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.001 0.020 340 ? r_gen_planes_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? 1.344 1.475 902 ? r_mcbond_it ? ? 'X-RAY DIFFRACTION' ? 1.302 1.472 901 ? r_mcbond_other ? ? 'X-RAY DIFFRACTION' ? 1.799 2.217 1124 ? r_mcangle_it ? ? 'X-RAY DIFFRACTION' ? 1.804 2.220 1125 ? r_mcangle_other ? ? 'X-RAY DIFFRACTION' ? 2.943 1.728 805 ? r_scbond_it ? ? 'X-RAY DIFFRACTION' ? 2.943 1.728 805 ? r_scbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_scangle_it ? ? 'X-RAY DIFFRACTION' ? 4.240 2.506 1207 ? r_scangle_other ? ? 'X-RAY DIFFRACTION' ? 6.264 15.213 2191 ? r_long_range_B_refined ? ? 'X-RAY DIFFRACTION' ? 5.803 13.254 1921 ? r_long_range_B_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_rigid_bond_restr ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_sphericity_free ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_sphericity_bonded ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 1.172 _refine_ls_shell.d_res_low 1.203 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 142 _refine_ls_shell.number_reflns_R_work 2989 _refine_ls_shell.percent_reflns_obs 65.42 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.219 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.189 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 5YKZ _struct.title 'The crystal structure of Penaeus vannamei nodavirus P-domain (P21)' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5YKZ _struct_keywords.text 'viral capsid protein, VIRAL PROTEIN' _struct_keywords.pdbx_keywords 'VIRAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A5H7Q8_9VIRU _struct_ref.pdbx_db_accession A5H7Q8 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;NPTSLTDVRVDKAVNFIKPEVSGVAEIQTVTGLSPSTSYLLTPAFLEQNFQSEAGIYILSATPVEGEGTISINMDPTVTT VSGFIKVKTDTFGTFDLSVVLTTASKKQTTGFNIIAATS ; _struct_ref.pdbx_align_begin 250 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5YKZ A 1 ? 119 ? A5H7Q8 250 ? 368 ? 1 119 2 1 5YKZ B 1 ? 119 ? A5H7Q8 250 ? 368 ? 1 119 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2390 ? 1 MORE -13 ? 1 'SSA (A^2)' 9950 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 5 ? AA2 ? 8 ? AA3 ? 8 ? AA4 ? 8 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA2 4 5 ? anti-parallel AA2 5 6 ? anti-parallel AA2 6 7 ? anti-parallel AA2 7 8 ? anti-parallel AA3 1 2 ? anti-parallel AA3 2 3 ? anti-parallel AA3 3 4 ? anti-parallel AA3 4 5 ? anti-parallel AA3 5 6 ? anti-parallel AA3 6 7 ? anti-parallel AA3 7 8 ? anti-parallel AA4 1 2 ? anti-parallel AA4 2 3 ? anti-parallel AA4 3 4 ? anti-parallel AA4 4 5 ? anti-parallel AA4 5 6 ? anti-parallel AA4 6 7 ? anti-parallel AA4 7 8 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 VAL A 8 ? ASN A 15 ? VAL A 8 ASN A 15 AA1 2 GLY A 111 ? ALA A 117 ? GLY A 111 ALA A 117 AA1 3 SER A 38 ? GLN A 48 ? SER A 38 GLN A 48 AA1 4 ILE A 85 ? LYS A 88 ? ILE A 85 LYS A 88 AA1 5 GLU A 67 ? GLY A 68 ? GLU A 67 GLY A 68 AA2 1 VAL A 8 ? ASN A 15 ? VAL A 8 ASN A 15 AA2 2 GLY A 111 ? ALA A 117 ? GLY A 111 ALA A 117 AA2 3 SER A 38 ? GLN A 48 ? SER A 38 GLN A 48 AA2 4 THR B 79 ? SER B 82 ? THR B 79 SER B 82 AA2 5 ILE B 70 ? ASN B 73 ? ILE B 70 ASN B 73 AA2 6 ILE B 58 ? PRO B 63 ? ILE B 58 PRO B 63 AA2 7 PHE B 95 ? LEU B 101 ? PHE B 95 LEU B 101 AA2 8 GLU B 26 ? VAL B 30 ? GLU B 26 VAL B 30 AA3 1 GLU A 26 ? VAL A 30 ? GLU A 26 VAL A 30 AA3 2 PHE A 95 ? LEU A 101 ? PHE A 95 LEU A 101 AA3 3 ILE A 58 ? PRO A 63 ? ILE A 58 PRO A 63 AA3 4 ILE A 70 ? ASN A 73 ? ILE A 70 ASN A 73 AA3 5 THR A 79 ? SER A 82 ? THR A 79 SER A 82 AA3 6 SER B 38 ? GLN B 48 ? SER B 38 GLN B 48 AA3 7 GLY B 111 ? THR B 118 ? GLY B 111 THR B 118 AA3 8 ASP B 7 ? ASN B 15 ? ASP B 7 ASN B 15 AA4 1 GLU A 26 ? VAL A 30 ? GLU A 26 VAL A 30 AA4 2 PHE A 95 ? LEU A 101 ? PHE A 95 LEU A 101 AA4 3 ILE A 58 ? PRO A 63 ? ILE A 58 PRO A 63 AA4 4 ILE A 70 ? ASN A 73 ? ILE A 70 ASN A 73 AA4 5 THR A 79 ? SER A 82 ? THR A 79 SER A 82 AA4 6 SER B 38 ? GLN B 48 ? SER B 38 GLN B 48 AA4 7 ILE B 85 ? LYS B 88 ? ILE B 85 LYS B 88 AA4 8 GLY B 66 ? GLU B 67 ? GLY B 66 GLU B 67 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N LYS A 12 ? N LYS A 12 O ILE A 114 ? O ILE A 114 AA1 2 3 O ILE A 115 ? O ILE A 115 N LEU A 40 ? N LEU A 40 AA1 3 4 N TYR A 39 ? N TYR A 39 O VAL A 87 ? O VAL A 87 AA1 4 5 O LYS A 86 ? O LYS A 86 N GLU A 67 ? N GLU A 67 AA2 1 2 N LYS A 12 ? N LYS A 12 O ILE A 114 ? O ILE A 114 AA2 2 3 O ILE A 115 ? O ILE A 115 N LEU A 40 ? N LEU A 40 AA2 3 4 N GLN A 48 ? N GLN A 48 O THR B 79 ? O THR B 79 AA2 4 5 O SER B 82 ? O SER B 82 N SER B 71 ? N SER B 71 AA2 5 6 O ILE B 72 ? O ILE B 72 N LEU B 59 ? N LEU B 59 AA2 6 7 N THR B 62 ? N THR B 62 O SER B 98 ? O SER B 98 AA2 7 8 O PHE B 95 ? O PHE B 95 N VAL B 30 ? N VAL B 30 AA3 1 2 N GLU A 26 ? N GLU A 26 O VAL A 99 ? O VAL A 99 AA3 2 3 O SER A 98 ? O SER A 98 N THR A 62 ? N THR A 62 AA3 3 4 N LEU A 59 ? N LEU A 59 O ILE A 72 ? O ILE A 72 AA3 4 5 N ASN A 73 ? N ASN A 73 O THR A 80 ? O THR A 80 AA3 5 6 N THR A 79 ? N THR A 79 O GLN B 48 ? O GLN B 48 AA3 6 7 N LEU B 40 ? N LEU B 40 O ILE B 115 ? O ILE B 115 AA3 7 8 O ILE B 114 ? O ILE B 114 N LYS B 12 ? N LYS B 12 AA4 1 2 N GLU A 26 ? N GLU A 26 O VAL A 99 ? O VAL A 99 AA4 2 3 O SER A 98 ? O SER A 98 N THR A 62 ? N THR A 62 AA4 3 4 N LEU A 59 ? N LEU A 59 O ILE A 72 ? O ILE A 72 AA4 4 5 N ASN A 73 ? N ASN A 73 O THR A 80 ? O THR A 80 AA4 5 6 N THR A 79 ? N THR A 79 O GLN B 48 ? O GLN B 48 AA4 6 7 N TYR B 39 ? N TYR B 39 O VAL B 87 ? O VAL B 87 AA4 7 8 O LYS B 86 ? O LYS B 86 N GLU B 67 ? N GLU B 67 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 363 ? ? O A HOH 399 ? ? 2.07 2 1 O A HOH 203 ? ? O A HOH 344 ? ? 2.10 3 1 O B HOH 264 ? ? O B HOH 320 ? ? 2.10 4 1 O B HOH 289 ? ? O B HOH 335 ? ? 2.10 5 1 O A HOH 373 ? ? O A HOH 396 ? ? 2.11 6 1 O B HOH 271 ? ? O B HOH 357 ? ? 2.16 7 1 O A HOH 397 ? ? O B HOH 365 ? ? 2.19 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 CD A GLU 26 ? ? OE1 A GLU 26 ? ? 1.324 1.252 0.072 0.011 N 2 1 CG B GLU 65 ? ? CD B GLU 65 ? ? 1.417 1.515 -0.098 0.015 N 3 1 CG B ASN 113 ? ? ND2 B ASN 113 ? ? 1.147 1.324 -0.177 0.025 N # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CB _pdbx_validate_rmsd_angle.auth_asym_id_1 B _pdbx_validate_rmsd_angle.auth_comp_id_1 ASP _pdbx_validate_rmsd_angle.auth_seq_id_1 7 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CG _pdbx_validate_rmsd_angle.auth_asym_id_2 B _pdbx_validate_rmsd_angle.auth_comp_id_2 ASP _pdbx_validate_rmsd_angle.auth_seq_id_2 7 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 OD2 _pdbx_validate_rmsd_angle.auth_asym_id_3 B _pdbx_validate_rmsd_angle.auth_comp_id_3 ASP _pdbx_validate_rmsd_angle.auth_seq_id_3 7 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 124.58 _pdbx_validate_rmsd_angle.angle_target_value 118.30 _pdbx_validate_rmsd_angle.angle_deviation 6.28 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.90 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 VAL A 78 ? ? -159.99 82.29 2 1 VAL B 78 ? ? -160.85 77.16 # loop_ _pdbx_distant_solvent_atoms.id _pdbx_distant_solvent_atoms.PDB_model_num _pdbx_distant_solvent_atoms.auth_atom_id _pdbx_distant_solvent_atoms.label_alt_id _pdbx_distant_solvent_atoms.auth_asym_id _pdbx_distant_solvent_atoms.auth_comp_id _pdbx_distant_solvent_atoms.auth_seq_id _pdbx_distant_solvent_atoms.PDB_ins_code _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance _pdbx_distant_solvent_atoms.neighbor_ligand_distance 1 1 O ? A HOH 400 ? 5.86 . 2 1 O ? B HOH 413 ? 5.84 . 3 1 O ? B HOH 414 ? 6.05 . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ASN 1 ? A ASN 1 2 1 Y 1 A PRO 2 ? A PRO 2 3 1 Y 1 A THR 3 ? A THR 3 4 1 Y 1 A SER 4 ? A SER 4 5 1 Y 1 A LEU 5 ? A LEU 5 6 1 Y 1 A THR 6 ? A THR 6 7 1 Y 1 A SER 119 ? A SER 119 8 1 Y 1 B ASN 1 ? B ASN 1 9 1 Y 1 B PRO 2 ? B PRO 2 10 1 Y 1 B THR 3 ? B THR 3 11 1 Y 1 B SER 4 ? B SER 4 12 1 Y 1 B LEU 5 ? B LEU 5 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 GLN N N N N 74 GLN CA C N S 75 GLN C C N N 76 GLN O O N N 77 GLN CB C N N 78 GLN CG C N N 79 GLN CD C N N 80 GLN OE1 O N N 81 GLN NE2 N N N 82 GLN OXT O N N 83 GLN H H N N 84 GLN H2 H N N 85 GLN HA H N N 86 GLN HB2 H N N 87 GLN HB3 H N N 88 GLN HG2 H N N 89 GLN HG3 H N N 90 GLN HE21 H N N 91 GLN HE22 H N N 92 GLN HXT H N N 93 GLU N N N N 94 GLU CA C N S 95 GLU C C N N 96 GLU O O N N 97 GLU CB C N N 98 GLU CG C N N 99 GLU CD C N N 100 GLU OE1 O N N 101 GLU OE2 O N N 102 GLU OXT O N N 103 GLU H H N N 104 GLU H2 H N N 105 GLU HA H N N 106 GLU HB2 H N N 107 GLU HB3 H N N 108 GLU HG2 H N N 109 GLU HG3 H N N 110 GLU HE2 H N N 111 GLU HXT H N N 112 GLY N N N N 113 GLY CA C N N 114 GLY C C N N 115 GLY O O N N 116 GLY OXT O N N 117 GLY H H N N 118 GLY H2 H N N 119 GLY HA2 H N N 120 GLY HA3 H N N 121 GLY HXT H N N 122 HOH O O N N 123 HOH H1 H N N 124 HOH H2 H N N 125 ILE N N N N 126 ILE CA C N S 127 ILE C C N N 128 ILE O O N N 129 ILE CB C N S 130 ILE CG1 C N N 131 ILE CG2 C N N 132 ILE CD1 C N N 133 ILE OXT O N N 134 ILE H H N N 135 ILE H2 H N N 136 ILE HA H N N 137 ILE HB H N N 138 ILE HG12 H N N 139 ILE HG13 H N N 140 ILE HG21 H N N 141 ILE HG22 H N N 142 ILE HG23 H N N 143 ILE HD11 H N N 144 ILE HD12 H N N 145 ILE HD13 H N N 146 ILE HXT H N N 147 LEU N N N N 148 LEU CA C N S 149 LEU C C N N 150 LEU O O N N 151 LEU CB C N N 152 LEU CG C N N 153 LEU CD1 C N N 154 LEU CD2 C N N 155 LEU OXT O N N 156 LEU H H N N 157 LEU H2 H N N 158 LEU HA H N N 159 LEU HB2 H N N 160 LEU HB3 H N N 161 LEU HG H N N 162 LEU HD11 H N N 163 LEU HD12 H N N 164 LEU HD13 H N N 165 LEU HD21 H N N 166 LEU HD22 H N N 167 LEU HD23 H N N 168 LEU HXT H N N 169 LYS N N N N 170 LYS CA C N S 171 LYS C C N N 172 LYS O O N N 173 LYS CB C N N 174 LYS CG C N N 175 LYS CD C N N 176 LYS CE C N N 177 LYS NZ N N N 178 LYS OXT O N N 179 LYS H H N N 180 LYS H2 H N N 181 LYS HA H N N 182 LYS HB2 H N N 183 LYS HB3 H N N 184 LYS HG2 H N N 185 LYS HG3 H N N 186 LYS HD2 H N N 187 LYS HD3 H N N 188 LYS HE2 H N N 189 LYS HE3 H N N 190 LYS HZ1 H N N 191 LYS HZ2 H N N 192 LYS HZ3 H N N 193 LYS HXT H N N 194 MET N N N N 195 MET CA C N S 196 MET C C N N 197 MET O O N N 198 MET CB C N N 199 MET CG C N N 200 MET SD S N N 201 MET CE C N N 202 MET OXT O N N 203 MET H H N N 204 MET H2 H N N 205 MET HA H N N 206 MET HB2 H N N 207 MET HB3 H N N 208 MET HG2 H N N 209 MET HG3 H N N 210 MET HE1 H N N 211 MET HE2 H N N 212 MET HE3 H N N 213 MET HXT H N N 214 PHE N N N N 215 PHE CA C N S 216 PHE C C N N 217 PHE O O N N 218 PHE CB C N N 219 PHE CG C Y N 220 PHE CD1 C Y N 221 PHE CD2 C Y N 222 PHE CE1 C Y N 223 PHE CE2 C Y N 224 PHE CZ C Y N 225 PHE OXT O N N 226 PHE H H N N 227 PHE H2 H N N 228 PHE HA H N N 229 PHE HB2 H N N 230 PHE HB3 H N N 231 PHE HD1 H N N 232 PHE HD2 H N N 233 PHE HE1 H N N 234 PHE HE2 H N N 235 PHE HZ H N N 236 PHE HXT H N N 237 PRO N N N N 238 PRO CA C N S 239 PRO C C N N 240 PRO O O N N 241 PRO CB C N N 242 PRO CG C N N 243 PRO CD C N N 244 PRO OXT O N N 245 PRO H H N N 246 PRO HA H N N 247 PRO HB2 H N N 248 PRO HB3 H N N 249 PRO HG2 H N N 250 PRO HG3 H N N 251 PRO HD2 H N N 252 PRO HD3 H N N 253 PRO HXT H N N 254 SER N N N N 255 SER CA C N S 256 SER C C N N 257 SER O O N N 258 SER CB C N N 259 SER OG O N N 260 SER OXT O N N 261 SER H H N N 262 SER H2 H N N 263 SER HA H N N 264 SER HB2 H N N 265 SER HB3 H N N 266 SER HG H N N 267 SER HXT H N N 268 THR N N N N 269 THR CA C N S 270 THR C C N N 271 THR O O N N 272 THR CB C N R 273 THR OG1 O N N 274 THR CG2 C N N 275 THR OXT O N N 276 THR H H N N 277 THR H2 H N N 278 THR HA H N N 279 THR HB H N N 280 THR HG1 H N N 281 THR HG21 H N N 282 THR HG22 H N N 283 THR HG23 H N N 284 THR HXT H N N 285 TYR N N N N 286 TYR CA C N S 287 TYR C C N N 288 TYR O O N N 289 TYR CB C N N 290 TYR CG C Y N 291 TYR CD1 C Y N 292 TYR CD2 C Y N 293 TYR CE1 C Y N 294 TYR CE2 C Y N 295 TYR CZ C Y N 296 TYR OH O N N 297 TYR OXT O N N 298 TYR H H N N 299 TYR H2 H N N 300 TYR HA H N N 301 TYR HB2 H N N 302 TYR HB3 H N N 303 TYR HD1 H N N 304 TYR HD2 H N N 305 TYR HE1 H N N 306 TYR HE2 H N N 307 TYR HH H N N 308 TYR HXT H N N 309 VAL N N N N 310 VAL CA C N S 311 VAL C C N N 312 VAL O O N N 313 VAL CB C N N 314 VAL CG1 C N N 315 VAL CG2 C N N 316 VAL OXT O N N 317 VAL H H N N 318 VAL H2 H N N 319 VAL HA H N N 320 VAL HB H N N 321 VAL HG11 H N N 322 VAL HG12 H N N 323 VAL HG13 H N N 324 VAL HG21 H N N 325 VAL HG22 H N N 326 VAL HG23 H N N 327 VAL HXT H N N 328 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 GLN N CA sing N N 70 GLN N H sing N N 71 GLN N H2 sing N N 72 GLN CA C sing N N 73 GLN CA CB sing N N 74 GLN CA HA sing N N 75 GLN C O doub N N 76 GLN C OXT sing N N 77 GLN CB CG sing N N 78 GLN CB HB2 sing N N 79 GLN CB HB3 sing N N 80 GLN CG CD sing N N 81 GLN CG HG2 sing N N 82 GLN CG HG3 sing N N 83 GLN CD OE1 doub N N 84 GLN CD NE2 sing N N 85 GLN NE2 HE21 sing N N 86 GLN NE2 HE22 sing N N 87 GLN OXT HXT sing N N 88 GLU N CA sing N N 89 GLU N H sing N N 90 GLU N H2 sing N N 91 GLU CA C sing N N 92 GLU CA CB sing N N 93 GLU CA HA sing N N 94 GLU C O doub N N 95 GLU C OXT sing N N 96 GLU CB CG sing N N 97 GLU CB HB2 sing N N 98 GLU CB HB3 sing N N 99 GLU CG CD sing N N 100 GLU CG HG2 sing N N 101 GLU CG HG3 sing N N 102 GLU CD OE1 doub N N 103 GLU CD OE2 sing N N 104 GLU OE2 HE2 sing N N 105 GLU OXT HXT sing N N 106 GLY N CA sing N N 107 GLY N H sing N N 108 GLY N H2 sing N N 109 GLY CA C sing N N 110 GLY CA HA2 sing N N 111 GLY CA HA3 sing N N 112 GLY C O doub N N 113 GLY C OXT sing N N 114 GLY OXT HXT sing N N 115 HOH O H1 sing N N 116 HOH O H2 sing N N 117 ILE N CA sing N N 118 ILE N H sing N N 119 ILE N H2 sing N N 120 ILE CA C sing N N 121 ILE CA CB sing N N 122 ILE CA HA sing N N 123 ILE C O doub N N 124 ILE C OXT sing N N 125 ILE CB CG1 sing N N 126 ILE CB CG2 sing N N 127 ILE CB HB sing N N 128 ILE CG1 CD1 sing N N 129 ILE CG1 HG12 sing N N 130 ILE CG1 HG13 sing N N 131 ILE CG2 HG21 sing N N 132 ILE CG2 HG22 sing N N 133 ILE CG2 HG23 sing N N 134 ILE CD1 HD11 sing N N 135 ILE CD1 HD12 sing N N 136 ILE CD1 HD13 sing N N 137 ILE OXT HXT sing N N 138 LEU N CA sing N N 139 LEU N H sing N N 140 LEU N H2 sing N N 141 LEU CA C sing N N 142 LEU CA CB sing N N 143 LEU CA HA sing N N 144 LEU C O doub N N 145 LEU C OXT sing N N 146 LEU CB CG sing N N 147 LEU CB HB2 sing N N 148 LEU CB HB3 sing N N 149 LEU CG CD1 sing N N 150 LEU CG CD2 sing N N 151 LEU CG HG sing N N 152 LEU CD1 HD11 sing N N 153 LEU CD1 HD12 sing N N 154 LEU CD1 HD13 sing N N 155 LEU CD2 HD21 sing N N 156 LEU CD2 HD22 sing N N 157 LEU CD2 HD23 sing N N 158 LEU OXT HXT sing N N 159 LYS N CA sing N N 160 LYS N H sing N N 161 LYS N H2 sing N N 162 LYS CA C sing N N 163 LYS CA CB sing N N 164 LYS CA HA sing N N 165 LYS C O doub N N 166 LYS C OXT sing N N 167 LYS CB CG sing N N 168 LYS CB HB2 sing N N 169 LYS CB HB3 sing N N 170 LYS CG CD sing N N 171 LYS CG HG2 sing N N 172 LYS CG HG3 sing N N 173 LYS CD CE sing N N 174 LYS CD HD2 sing N N 175 LYS CD HD3 sing N N 176 LYS CE NZ sing N N 177 LYS CE HE2 sing N N 178 LYS CE HE3 sing N N 179 LYS NZ HZ1 sing N N 180 LYS NZ HZ2 sing N N 181 LYS NZ HZ3 sing N N 182 LYS OXT HXT sing N N 183 MET N CA sing N N 184 MET N H sing N N 185 MET N H2 sing N N 186 MET CA C sing N N 187 MET CA CB sing N N 188 MET CA HA sing N N 189 MET C O doub N N 190 MET C OXT sing N N 191 MET CB CG sing N N 192 MET CB HB2 sing N N 193 MET CB HB3 sing N N 194 MET CG SD sing N N 195 MET CG HG2 sing N N 196 MET CG HG3 sing N N 197 MET SD CE sing N N 198 MET CE HE1 sing N N 199 MET CE HE2 sing N N 200 MET CE HE3 sing N N 201 MET OXT HXT sing N N 202 PHE N CA sing N N 203 PHE N H sing N N 204 PHE N H2 sing N N 205 PHE CA C sing N N 206 PHE CA CB sing N N 207 PHE CA HA sing N N 208 PHE C O doub N N 209 PHE C OXT sing N N 210 PHE CB CG sing N N 211 PHE CB HB2 sing N N 212 PHE CB HB3 sing N N 213 PHE CG CD1 doub Y N 214 PHE CG CD2 sing Y N 215 PHE CD1 CE1 sing Y N 216 PHE CD1 HD1 sing N N 217 PHE CD2 CE2 doub Y N 218 PHE CD2 HD2 sing N N 219 PHE CE1 CZ doub Y N 220 PHE CE1 HE1 sing N N 221 PHE CE2 CZ sing Y N 222 PHE CE2 HE2 sing N N 223 PHE CZ HZ sing N N 224 PHE OXT HXT sing N N 225 PRO N CA sing N N 226 PRO N CD sing N N 227 PRO N H sing N N 228 PRO CA C sing N N 229 PRO CA CB sing N N 230 PRO CA HA sing N N 231 PRO C O doub N N 232 PRO C OXT sing N N 233 PRO CB CG sing N N 234 PRO CB HB2 sing N N 235 PRO CB HB3 sing N N 236 PRO CG CD sing N N 237 PRO CG HG2 sing N N 238 PRO CG HG3 sing N N 239 PRO CD HD2 sing N N 240 PRO CD HD3 sing N N 241 PRO OXT HXT sing N N 242 SER N CA sing N N 243 SER N H sing N N 244 SER N H2 sing N N 245 SER CA C sing N N 246 SER CA CB sing N N 247 SER CA HA sing N N 248 SER C O doub N N 249 SER C OXT sing N N 250 SER CB OG sing N N 251 SER CB HB2 sing N N 252 SER CB HB3 sing N N 253 SER OG HG sing N N 254 SER OXT HXT sing N N 255 THR N CA sing N N 256 THR N H sing N N 257 THR N H2 sing N N 258 THR CA C sing N N 259 THR CA CB sing N N 260 THR CA HA sing N N 261 THR C O doub N N 262 THR C OXT sing N N 263 THR CB OG1 sing N N 264 THR CB CG2 sing N N 265 THR CB HB sing N N 266 THR OG1 HG1 sing N N 267 THR CG2 HG21 sing N N 268 THR CG2 HG22 sing N N 269 THR CG2 HG23 sing N N 270 THR OXT HXT sing N N 271 TYR N CA sing N N 272 TYR N H sing N N 273 TYR N H2 sing N N 274 TYR CA C sing N N 275 TYR CA CB sing N N 276 TYR CA HA sing N N 277 TYR C O doub N N 278 TYR C OXT sing N N 279 TYR CB CG sing N N 280 TYR CB HB2 sing N N 281 TYR CB HB3 sing N N 282 TYR CG CD1 doub Y N 283 TYR CG CD2 sing Y N 284 TYR CD1 CE1 sing Y N 285 TYR CD1 HD1 sing N N 286 TYR CD2 CE2 doub Y N 287 TYR CD2 HD2 sing N N 288 TYR CE1 CZ doub Y N 289 TYR CE1 HE1 sing N N 290 TYR CE2 CZ sing Y N 291 TYR CE2 HE2 sing N N 292 TYR CZ OH sing N N 293 TYR OH HH sing N N 294 TYR OXT HXT sing N N 295 VAL N CA sing N N 296 VAL N H sing N N 297 VAL N H2 sing N N 298 VAL CA C sing N N 299 VAL CA CB sing N N 300 VAL CA HA sing N N 301 VAL C O doub N N 302 VAL C OXT sing N N 303 VAL CB CG1 sing N N 304 VAL CB CG2 sing N N 305 VAL CB HB sing N N 306 VAL CG1 HG11 sing N N 307 VAL CG1 HG12 sing N N 308 VAL CG1 HG13 sing N N 309 VAL CG2 HG21 sing N N 310 VAL CG2 HG22 sing N N 311 VAL CG2 HG23 sing N N 312 VAL OXT HXT sing N N 313 # _pdbx_audit_support.funding_organization 'Ministry of Science and Technology' _pdbx_audit_support.country Taiwan _pdbx_audit_support.grant_number 105-2311-B-213-001-MY3 _pdbx_audit_support.ordinal 1 # _atom_sites.entry_id 5YKZ _atom_sites.fract_transf_matrix[1][1] 0.023474 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.008258 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018800 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.023009 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_