HEADER VIRAL PROTEIN 16-OCT-17 5YKZ TITLE THE CRYSTAL STRUCTURE OF PENAEUS VANNAMEI NODAVIRUS P-DOMAIN (P21) COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAPSID PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 250-368; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PENAEUS VANNAMEI NODAVIRUS; SOURCE 3 ORGANISM_TAXID: 430911; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS VIRAL CAPSID PROTEIN, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR N.C.CHEN,M.YOSHIMURA,C.C.LIN,H.H.GUAN,P.CHUANKHAYAN,C.J.CHEN REVDAT 5 27-MAR-24 5YKZ 1 REMARK REVDAT 4 13-MAR-19 5YKZ 1 JRNL REVDAT 3 27-FEB-19 5YKZ 1 JRNL REVDAT 2 07-NOV-18 5YKZ 1 TITLE REVDAT 1 24-OCT-18 5YKZ 0 JRNL AUTH N.C.CHEN,M.YOSHIMURA,N.MIYAZAKI,H.H.GUAN,P.CHUANKHAYAN, JRNL AUTH 2 C.C.LIN,S.K.CHEN,P.J.LIN,Y.C.HUANG,K.IWASAKI,A.NAKAGAWA, JRNL AUTH 3 S.I.CHAN,C.J.CHEN JRNL TITL THE ATOMIC STRUCTURES OF SHRIMP NODAVIRUSES REVEAL NEW JRNL TITL 2 DIMERIC SPIKE STRUCTURES AND PARTICLE POLYMORPHISM. JRNL REF COMMUN BIOL V. 2 72 2019 JRNL REFN ESSN 2399-3642 JRNL PMID 30820467 JRNL DOI 10.1038/S42003-019-0311-Z REMARK 2 REMARK 2 RESOLUTION. 1.17 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.17 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 22.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.4 REMARK 3 NUMBER OF REFLECTIONS : 58534 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.152 REMARK 3 R VALUE (WORKING SET) : 0.151 REMARK 3 FREE R VALUE : 0.170 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 2910 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.17 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.20 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2989 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 65.42 REMARK 3 BIN R VALUE (WORKING SET) : 0.1890 REMARK 3 BIN FREE R VALUE SET COUNT : 142 REMARK 3 BIN FREE R VALUE : 0.2190 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1681 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 414 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.03000 REMARK 3 B22 (A**2) : -0.17000 REMARK 3 B33 (A**2) : 0.15000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.04000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.037 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.039 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.027 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.563 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.980 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.976 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1707 ; 0.027 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 1646 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2330 ; 2.117 ; 1.965 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3806 ; 0.896 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 224 ; 7.161 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 58 ;31.076 ;26.207 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 280 ; 9.692 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 2 ;10.703 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 301 ; 0.144 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1902 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 340 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 902 ; 1.344 ; 1.475 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 901 ; 1.302 ; 1.472 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1124 ; 1.799 ; 2.217 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1125 ; 1.804 ; 2.220 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 805 ; 2.943 ; 1.728 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 805 ; 2.943 ; 1.728 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1207 ; 4.240 ; 2.506 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2191 ; 6.264 ;15.213 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 1921 ; 5.803 ;13.254 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5YKZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-OCT-17. REMARK 100 THE DEPOSITION ID IS D_1300005466. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-MAY-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL15A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9790 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 65509 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.170 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07700 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.17 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.41000 REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30%(W/V) POLYETHYLENE GLYCOL 4,000, REMARK 280 100MM MES, PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 26.59600 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 1 REMARK 465 PRO A 2 REMARK 465 THR A 3 REMARK 465 SER A 4 REMARK 465 LEU A 5 REMARK 465 THR A 6 REMARK 465 SER A 119 REMARK 465 ASN B 1 REMARK 465 PRO B 2 REMARK 465 THR B 3 REMARK 465 SER B 4 REMARK 465 LEU B 5 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 363 O HOH A 399 2.07 REMARK 500 O HOH A 203 O HOH A 344 2.10 REMARK 500 O HOH B 264 O HOH B 320 2.10 REMARK 500 O HOH B 289 O HOH B 335 2.10 REMARK 500 O HOH A 373 O HOH A 396 2.11 REMARK 500 O HOH B 271 O HOH B 357 2.16 REMARK 500 O HOH A 397 O HOH B 365 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 26 CD GLU A 26 OE1 0.072 REMARK 500 GLU B 65 CG GLU B 65 CD -0.098 REMARK 500 ASN B 113 CG ASN B 113 ND2 -0.177 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 7 CB - CG - OD2 ANGL. DEV. = 6.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 78 82.29 -159.99 REMARK 500 VAL B 78 77.16 -160.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 400 DISTANCE = 5.86 ANGSTROMS REMARK 525 HOH B 413 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH B 414 DISTANCE = 6.05 ANGSTROMS DBREF 5YKZ A 1 119 UNP A5H7Q8 A5H7Q8_9VIRU 250 368 DBREF 5YKZ B 1 119 UNP A5H7Q8 A5H7Q8_9VIRU 250 368 SEQRES 1 A 119 ASN PRO THR SER LEU THR ASP VAL ARG VAL ASP LYS ALA SEQRES 2 A 119 VAL ASN PHE ILE LYS PRO GLU VAL SER GLY VAL ALA GLU SEQRES 3 A 119 ILE GLN THR VAL THR GLY LEU SER PRO SER THR SER TYR SEQRES 4 A 119 LEU LEU THR PRO ALA PHE LEU GLU GLN ASN PHE GLN SER SEQRES 5 A 119 GLU ALA GLY ILE TYR ILE LEU SER ALA THR PRO VAL GLU SEQRES 6 A 119 GLY GLU GLY THR ILE SER ILE ASN MET ASP PRO THR VAL SEQRES 7 A 119 THR THR VAL SER GLY PHE ILE LYS VAL LYS THR ASP THR SEQRES 8 A 119 PHE GLY THR PHE ASP LEU SER VAL VAL LEU THR THR ALA SEQRES 9 A 119 SER LYS LYS GLN THR THR GLY PHE ASN ILE ILE ALA ALA SEQRES 10 A 119 THR SER SEQRES 1 B 119 ASN PRO THR SER LEU THR ASP VAL ARG VAL ASP LYS ALA SEQRES 2 B 119 VAL ASN PHE ILE LYS PRO GLU VAL SER GLY VAL ALA GLU SEQRES 3 B 119 ILE GLN THR VAL THR GLY LEU SER PRO SER THR SER TYR SEQRES 4 B 119 LEU LEU THR PRO ALA PHE LEU GLU GLN ASN PHE GLN SER SEQRES 5 B 119 GLU ALA GLY ILE TYR ILE LEU SER ALA THR PRO VAL GLU SEQRES 6 B 119 GLY GLU GLY THR ILE SER ILE ASN MET ASP PRO THR VAL SEQRES 7 B 119 THR THR VAL SER GLY PHE ILE LYS VAL LYS THR ASP THR SEQRES 8 B 119 PHE GLY THR PHE ASP LEU SER VAL VAL LEU THR THR ALA SEQRES 9 B 119 SER LYS LYS GLN THR THR GLY PHE ASN ILE ILE ALA ALA SEQRES 10 B 119 THR SER FORMUL 3 HOH *414(H2 O) SHEET 1 AA1 5 VAL A 8 ASN A 15 0 SHEET 2 AA1 5 GLY A 111 ALA A 117 -1 O ILE A 114 N LYS A 12 SHEET 3 AA1 5 SER A 38 GLN A 48 -1 N LEU A 40 O ILE A 115 SHEET 4 AA1 5 ILE A 85 LYS A 88 -1 O VAL A 87 N TYR A 39 SHEET 5 AA1 5 GLU A 67 GLY A 68 -1 N GLU A 67 O LYS A 86 SHEET 1 AA2 8 VAL A 8 ASN A 15 0 SHEET 2 AA2 8 GLY A 111 ALA A 117 -1 O ILE A 114 N LYS A 12 SHEET 3 AA2 8 SER A 38 GLN A 48 -1 N LEU A 40 O ILE A 115 SHEET 4 AA2 8 THR B 79 SER B 82 -1 O THR B 79 N GLN A 48 SHEET 5 AA2 8 ILE B 70 ASN B 73 -1 N SER B 71 O SER B 82 SHEET 6 AA2 8 ILE B 58 PRO B 63 -1 N LEU B 59 O ILE B 72 SHEET 7 AA2 8 PHE B 95 LEU B 101 -1 O SER B 98 N THR B 62 SHEET 8 AA2 8 GLU B 26 VAL B 30 -1 N VAL B 30 O PHE B 95 SHEET 1 AA3 8 GLU A 26 VAL A 30 0 SHEET 2 AA3 8 PHE A 95 LEU A 101 -1 O VAL A 99 N GLU A 26 SHEET 3 AA3 8 ILE A 58 PRO A 63 -1 N THR A 62 O SER A 98 SHEET 4 AA3 8 ILE A 70 ASN A 73 -1 O ILE A 72 N LEU A 59 SHEET 5 AA3 8 THR A 79 SER A 82 -1 O THR A 80 N ASN A 73 SHEET 6 AA3 8 SER B 38 GLN B 48 -1 O GLN B 48 N THR A 79 SHEET 7 AA3 8 GLY B 111 THR B 118 -1 O ILE B 115 N LEU B 40 SHEET 8 AA3 8 ASP B 7 ASN B 15 -1 N LYS B 12 O ILE B 114 SHEET 1 AA4 8 GLU A 26 VAL A 30 0 SHEET 2 AA4 8 PHE A 95 LEU A 101 -1 O VAL A 99 N GLU A 26 SHEET 3 AA4 8 ILE A 58 PRO A 63 -1 N THR A 62 O SER A 98 SHEET 4 AA4 8 ILE A 70 ASN A 73 -1 O ILE A 72 N LEU A 59 SHEET 5 AA4 8 THR A 79 SER A 82 -1 O THR A 80 N ASN A 73 SHEET 6 AA4 8 SER B 38 GLN B 48 -1 O GLN B 48 N THR A 79 SHEET 7 AA4 8 ILE B 85 LYS B 88 -1 O VAL B 87 N TYR B 39 SHEET 8 AA4 8 GLY B 66 GLU B 67 -1 N GLU B 67 O LYS B 86 CRYST1 42.600 53.192 46.072 90.00 109.38 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023474 0.000000 0.008258 0.00000 SCALE2 0.000000 0.018800 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023009 0.00000