HEADER SIGNALING PROTEIN, HYDROLASE 22-OCT-17 5YMX TITLE MYXOCOCCUS XANTHUS MGLA IN GDP BOUND CONFORMATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: MUTUAL GLIDING-MOTILITY PROTEIN MGLA; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.6.5.2; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYXOCOCCUS XANTHUS (STRAIN DK 1622); SOURCE 3 ORGANISM_TAXID: 246197; SOURCE 4 STRAIN: DK 1622; SOURCE 5 GENE: MGLA, MXAN_1925; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PHIS17 KEYWDS SMALL RAS-LIKE GTPASE, CYTOSOLIC, MYXOCOCCUS MOTILITY PROTEIN, KEYWDS 2 SPATIAL OSCILLATION, SIGNALING PROTEIN, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.BARANWAL,P.GAYATHRI REVDAT 3 22-NOV-23 5YMX 1 REMARK REVDAT 2 16-OCT-19 5YMX 1 JRNL REVDAT 1 24-OCT-18 5YMX 0 JRNL AUTH J.BARANWAL,S.LHOSPICE,M.KANADE,S.CHAKRABORTY,P.R.GADE, JRNL AUTH 2 S.HARNE,J.HERROU,T.MIGNOT,P.GAYATHRI JRNL TITL ALLOSTERIC REGULATION OF A PROKARYOTIC SMALL RAS-LIKE GTPASE JRNL TITL 2 CONTRIBUTES TO CELL POLARITY OSCILLATIONS IN BACTERIAL JRNL TITL 3 MOTILITY. JRNL REF PLOS BIOL. V. 17 00459 2019 JRNL REFN ESSN 1545-7885 JRNL PMID 31560685 JRNL DOI 10.1371/JOURNAL.PBIO.3000459 REMARK 2 REMARK 2 RESOLUTION. 1.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.92 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 91051 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.152 REMARK 3 R VALUE (WORKING SET) : 0.151 REMARK 3 FREE R VALUE : 0.179 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 4587 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.9305 - 4.1907 0.92 2866 151 0.1722 0.1923 REMARK 3 2 4.1907 - 3.3278 0.99 2963 168 0.1335 0.1478 REMARK 3 3 3.3278 - 2.9076 1.00 2948 155 0.1508 0.1636 REMARK 3 4 2.9076 - 2.6420 1.00 2938 158 0.1583 0.1855 REMARK 3 5 2.6420 - 2.4527 1.00 2928 150 0.1554 0.1925 REMARK 3 6 2.4527 - 2.3082 1.00 2911 157 0.1471 0.1609 REMARK 3 7 2.3082 - 2.1926 1.00 2901 143 0.1459 0.1714 REMARK 3 8 2.1926 - 2.0972 1.00 2907 161 0.1424 0.1743 REMARK 3 9 2.0972 - 2.0165 1.00 2876 159 0.1462 0.1877 REMARK 3 10 2.0165 - 1.9469 1.00 2893 160 0.1377 0.1690 REMARK 3 11 1.9469 - 1.8860 1.00 2889 137 0.1491 0.2042 REMARK 3 12 1.8860 - 1.8321 1.00 2893 164 0.1346 0.1739 REMARK 3 13 1.8321 - 1.7839 1.00 2875 153 0.1289 0.1812 REMARK 3 14 1.7839 - 1.7404 1.00 2868 160 0.1269 0.1680 REMARK 3 15 1.7404 - 1.7008 1.00 2884 153 0.1290 0.1904 REMARK 3 16 1.7008 - 1.6646 1.00 2884 144 0.1366 0.1699 REMARK 3 17 1.6646 - 1.6314 1.00 2864 154 0.1297 0.1716 REMARK 3 18 1.6314 - 1.6006 1.00 2852 140 0.1311 0.1934 REMARK 3 19 1.6006 - 1.5720 1.00 2892 152 0.1207 0.1424 REMARK 3 20 1.5720 - 1.5453 1.00 2885 127 0.1258 0.1631 REMARK 3 21 1.5453 - 1.5204 1.00 2854 173 0.1496 0.1950 REMARK 3 22 1.5204 - 1.4970 1.00 2837 159 0.1668 0.1810 REMARK 3 23 1.4970 - 1.4750 1.00 2847 161 0.1567 0.1905 REMARK 3 24 1.4750 - 1.4542 1.00 2872 140 0.1796 0.1975 REMARK 3 25 1.4542 - 1.4346 1.00 2859 157 0.1791 0.2232 REMARK 3 26 1.4346 - 1.4160 1.00 2847 157 0.1769 0.2251 REMARK 3 27 1.4160 - 1.3983 1.00 2840 144 0.1828 0.2216 REMARK 3 28 1.3983 - 1.3814 1.00 2906 143 0.2029 0.2467 REMARK 3 29 1.3814 - 1.3653 1.00 2837 162 0.2572 0.3201 REMARK 3 30 1.3653 - 1.3500 1.00 2848 145 0.2561 0.3120 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.950 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 3388 REMARK 3 ANGLE : 0.878 4614 REMARK 3 CHIRALITY : 0.076 519 REMARK 3 PLANARITY : 0.004 581 REMARK 3 DIHEDRAL : 15.383 1267 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5YMX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-OCT-17. REMARK 100 THE DEPOSITION ID IS D_1300005555. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-JUL-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 - 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : BENT COLLIMATING MIRROR AND REMARK 200 TORROID REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 91269 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.350 REMARK 200 RESOLUTION RANGE LOW (A) : 32.030 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.05500 REMARK 200 R SYM (I) : 0.06000 REMARK 200 FOR THE DATA SET : 14.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : 0.73400 REMARK 200 R SYM FOR SHELL (I) : 0.79100 REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3T12 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% 2-METHYL 2,4-PENTANE DIOL (MPD), REMARK 280 10% PEG 4000, 100MM IMIDAZOLE, PH 8.0, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.67000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.71000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.30500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 44.71000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.67000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.30500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 340 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10720 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET B 1 REMARK 465 SER B 63 REMARK 465 LEU B 64 REMARK 465 GLY B 65 REMARK 465 GLU B 66 REMARK 465 ILE B 67 REMARK 465 ARG B 68 REMARK 465 GLY B 69 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 94 CG CD CE NZ REMARK 470 ARG B 9 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 71 CG CD CE NZ REMARK 470 LYS B 156 CG CD CE NZ REMARK 470 HIS B 160 CG ND1 CD2 CE1 NE2 REMARK 470 ASN B 162 CG OD1 ND2 REMARK 470 LYS B 185 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 530 O HOH A 582 2.01 REMARK 500 O HOH A 527 O HOH A 623 2.04 REMARK 500 O3' GDP A 301 O HOH A 401 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 49 -164.96 -102.24 REMARK 500 THR A 51 -80.60 -131.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 649 DISTANCE = 5.89 ANGSTROMS REMARK 525 HOH A 650 DISTANCE = 5.92 ANGSTROMS REMARK 525 HOH A 651 DISTANCE = 6.60 ANGSTROMS REMARK 525 HOH A 652 DISTANCE = 6.87 ANGSTROMS REMARK 525 HOH A 653 DISTANCE = 6.97 ANGSTROMS REMARK 525 HOH A 654 DISTANCE = 7.23 ANGSTROMS REMARK 525 HOH A 655 DISTANCE = 7.28 ANGSTROMS REMARK 525 HOH A 656 DISTANCE = 7.96 ANGSTROMS REMARK 525 HOH A 657 DISTANCE = 7.98 ANGSTROMS REMARK 525 HOH A 658 DISTANCE = 8.20 ANGSTROMS REMARK 525 HOH A 659 DISTANCE = 8.27 ANGSTROMS REMARK 525 HOH A 660 DISTANCE = 8.45 ANGSTROMS REMARK 525 HOH A 661 DISTANCE = 9.38 ANGSTROMS REMARK 525 HOH B 561 DISTANCE = 6.07 ANGSTROMS REMARK 525 HOH B 562 DISTANCE = 7.66 ANGSTROMS REMARK 525 HOH B 563 DISTANCE = 10.39 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GDP A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IMD A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GDP B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IMD B 302 DBREF 5YMX A 1 195 UNP Q1DB04 MGLA_MYXXD 1 195 DBREF 5YMX B 1 195 UNP Q1DB04 MGLA_MYXXD 1 195 SEQADV 5YMX GLY A 196 UNP Q1DB04 EXPRESSION TAG SEQADV 5YMX SER A 197 UNP Q1DB04 EXPRESSION TAG SEQADV 5YMX HIS A 198 UNP Q1DB04 EXPRESSION TAG SEQADV 5YMX HIS A 199 UNP Q1DB04 EXPRESSION TAG SEQADV 5YMX HIS A 200 UNP Q1DB04 EXPRESSION TAG SEQADV 5YMX HIS A 201 UNP Q1DB04 EXPRESSION TAG SEQADV 5YMX HIS A 202 UNP Q1DB04 EXPRESSION TAG SEQADV 5YMX HIS A 203 UNP Q1DB04 EXPRESSION TAG SEQADV 5YMX GLY B 196 UNP Q1DB04 EXPRESSION TAG SEQADV 5YMX SER B 197 UNP Q1DB04 EXPRESSION TAG SEQADV 5YMX HIS B 198 UNP Q1DB04 EXPRESSION TAG SEQADV 5YMX HIS B 199 UNP Q1DB04 EXPRESSION TAG SEQADV 5YMX HIS B 200 UNP Q1DB04 EXPRESSION TAG SEQADV 5YMX HIS B 201 UNP Q1DB04 EXPRESSION TAG SEQADV 5YMX HIS B 202 UNP Q1DB04 EXPRESSION TAG SEQADV 5YMX HIS B 203 UNP Q1DB04 EXPRESSION TAG SEQRES 1 A 203 MET SER PHE ILE ASN TYR SER SER ARG GLU ILE ASN CYS SEQRES 2 A 203 LYS ILE VAL TYR TYR GLY PRO GLY LEU CYS GLY LYS THR SEQRES 3 A 203 THR ASN LEU GLN TYR ILE TYR ASN LYS THR ALA ALA GLU SEQRES 4 A 203 THR LYS GLY LYS LEU ILE SER LEU SER THR GLU THR ASP SEQRES 5 A 203 ARG THR LEU PHE PHE ASP PHE LEU PRO LEU SER LEU GLY SEQRES 6 A 203 GLU ILE ARG GLY PHE LYS THR ARG PHE HIS LEU TYR THR SEQRES 7 A 203 VAL PRO GLY GLN VAL PHE TYR ASP ALA SER ARG LYS LEU SEQRES 8 A 203 ILE LEU LYS GLY VAL ASP GLY VAL VAL PHE VAL ALA ASP SEQRES 9 A 203 SER GLN ILE GLU ARG MET GLU ALA ASN MET GLU SER LEU SEQRES 10 A 203 GLU ASN LEU ARG ILE ASN LEU ALA GLU GLN GLY TYR ASP SEQRES 11 A 203 LEU ASN LYS ILE PRO TYR VAL ILE GLN TYR ASN LYS ARG SEQRES 12 A 203 ASP LEU PRO ASN ALA VAL THR VAL GLU GLU MET ARG LYS SEQRES 13 A 203 ALA LEU ASN HIS ARG ASN ILE PRO GLU TYR GLN ALA VAL SEQRES 14 A 203 ALA PRO THR GLY VAL GLY VAL PHE ASP THR LEU LYS ALA SEQRES 15 A 203 VAL ALA LYS LEU VAL LEU THR GLU LEU LYS LYS GLY GLY SEQRES 16 A 203 GLY SER HIS HIS HIS HIS HIS HIS SEQRES 1 B 203 MET SER PHE ILE ASN TYR SER SER ARG GLU ILE ASN CYS SEQRES 2 B 203 LYS ILE VAL TYR TYR GLY PRO GLY LEU CYS GLY LYS THR SEQRES 3 B 203 THR ASN LEU GLN TYR ILE TYR ASN LYS THR ALA ALA GLU SEQRES 4 B 203 THR LYS GLY LYS LEU ILE SER LEU SER THR GLU THR ASP SEQRES 5 B 203 ARG THR LEU PHE PHE ASP PHE LEU PRO LEU SER LEU GLY SEQRES 6 B 203 GLU ILE ARG GLY PHE LYS THR ARG PHE HIS LEU TYR THR SEQRES 7 B 203 VAL PRO GLY GLN VAL PHE TYR ASP ALA SER ARG LYS LEU SEQRES 8 B 203 ILE LEU LYS GLY VAL ASP GLY VAL VAL PHE VAL ALA ASP SEQRES 9 B 203 SER GLN ILE GLU ARG MET GLU ALA ASN MET GLU SER LEU SEQRES 10 B 203 GLU ASN LEU ARG ILE ASN LEU ALA GLU GLN GLY TYR ASP SEQRES 11 B 203 LEU ASN LYS ILE PRO TYR VAL ILE GLN TYR ASN LYS ARG SEQRES 12 B 203 ASP LEU PRO ASN ALA VAL THR VAL GLU GLU MET ARG LYS SEQRES 13 B 203 ALA LEU ASN HIS ARG ASN ILE PRO GLU TYR GLN ALA VAL SEQRES 14 B 203 ALA PRO THR GLY VAL GLY VAL PHE ASP THR LEU LYS ALA SEQRES 15 B 203 VAL ALA LYS LEU VAL LEU THR GLU LEU LYS LYS GLY GLY SEQRES 16 B 203 GLY SER HIS HIS HIS HIS HIS HIS HET GDP A 301 28 HET IMD A 302 10 HET EDO A 303 10 HET MPD A 304 22 HET GDP B 301 28 HET IMD B 302 10 HET EDO B 303 10 HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM IMD IMIDAZOLE HETNAM EDO 1,2-ETHANEDIOL HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 GDP 2(C10 H15 N5 O11 P2) FORMUL 4 IMD 2(C3 H5 N2 1+) FORMUL 5 EDO 2(C2 H6 O2) FORMUL 6 MPD C6 H14 O2 FORMUL 10 HOH *424(H2 O) HELIX 1 AA1 GLY A 24 LYS A 35 1 12 HELIX 2 AA2 THR A 36 LYS A 41 5 6 HELIX 3 AA3 TYR A 85 LEU A 93 1 9 HELIX 4 AA4 GLN A 106 GLU A 108 5 3 HELIX 5 AA5 ARG A 109 GLN A 127 1 19 HELIX 6 AA6 ASP A 130 ILE A 134 5 5 HELIX 7 AA7 THR A 150 ASN A 159 1 10 HELIX 8 AA8 VAL A 169 GLY A 173 5 5 HELIX 9 AA9 GLY A 175 GLY A 194 1 20 HELIX 10 AB1 GLY B 24 THR B 36 1 13 HELIX 11 AB2 ALA B 37 LYS B 41 5 5 HELIX 12 AB3 ASP B 86 LEU B 93 1 8 HELIX 13 AB4 GLN B 106 GLU B 108 5 3 HELIX 14 AB5 ARG B 109 GLN B 127 1 19 HELIX 15 AB6 THR B 150 ASN B 159 1 10 HELIX 16 AB7 VAL B 169 GLY B 173 5 5 HELIX 17 AB8 GLY B 175 GLY B 194 1 20 SHEET 1 AA1 5 PHE A 3 ASN A 5 0 SHEET 2 AA1 5 GLU A 10 TYR A 18 -1 O GLU A 10 N ASN A 5 SHEET 3 AA1 5 LYS A 71 THR A 78 1 O LYS A 71 N ILE A 11 SHEET 4 AA1 5 ARG A 53 PHE A 59 -1 N LEU A 55 O THR A 78 SHEET 5 AA1 5 ILE A 45 SER A 48 -1 N ILE A 45 O PHE A 56 SHEET 1 AA2 5 PHE A 3 ASN A 5 0 SHEET 2 AA2 5 GLU A 10 TYR A 18 -1 O GLU A 10 N ASN A 5 SHEET 3 AA2 5 GLY A 98 ASP A 104 1 O VAL A 102 N TYR A 18 SHEET 4 AA2 5 TYR A 136 ASN A 141 1 O GLN A 139 N ALA A 103 SHEET 5 AA2 5 GLU A 165 GLN A 167 1 O TYR A 166 N TYR A 140 SHEET 1 AA3 5 PHE B 3 ASN B 5 0 SHEET 2 AA3 5 GLU B 10 TYR B 18 -1 O ASN B 12 N PHE B 3 SHEET 3 AA3 5 LYS B 71 THR B 78 1 O HIS B 75 N ILE B 15 SHEET 4 AA3 5 ARG B 53 PHE B 59 -1 N PHE B 57 O LEU B 76 SHEET 5 AA3 5 ILE B 45 SER B 48 -1 N ILE B 45 O PHE B 56 SHEET 1 AA4 5 PHE B 3 ASN B 5 0 SHEET 2 AA4 5 GLU B 10 TYR B 18 -1 O ASN B 12 N PHE B 3 SHEET 3 AA4 5 GLY B 98 ASP B 104 1 O VAL B 102 N TYR B 18 SHEET 4 AA4 5 TYR B 136 ASN B 141 1 O GLN B 139 N ALA B 103 SHEET 5 AA4 5 GLU B 165 GLN B 167 1 O TYR B 166 N TYR B 140 SITE 1 AC1 20 LEU A 22 CYS A 23 GLY A 24 LYS A 25 SITE 2 AC1 20 THR A 26 THR A 27 PRO A 80 GLY A 81 SITE 3 AC1 20 ASN A 141 LYS A 142 ASP A 144 LEU A 145 SITE 4 AC1 20 VAL A 169 ALA A 170 PRO A 171 HOH A 401 SITE 5 AC1 20 HOH A 434 HOH A 459 LYS B 192 HOH B 557 SITE 1 AC2 2 HIS A 75 HOH A 415 SITE 1 AC3 1 HOH A 486 SITE 1 AC4 4 PRO A 61 SER A 63 LEU A 180 HIS A 202 SITE 1 AC5 19 LEU B 22 CYS B 23 GLY B 24 LYS B 25 SITE 2 AC5 19 THR B 26 THR B 27 GLY B 81 ASN B 141 SITE 3 AC5 19 LYS B 142 ASP B 144 LEU B 145 VAL B 169 SITE 4 AC5 19 ALA B 170 PRO B 171 HOH B 403 HOH B 412 SITE 5 AC5 19 HOH B 417 HOH B 448 HOH B 544 SITE 1 AC6 5 PHE B 3 ASN B 12 LYS B 14 HIS B 75 SITE 2 AC6 5 HOH B 433 CRYST1 67.340 68.610 89.420 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014850 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014575 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011183 0.00000