HEADER TRANSFERASE 24-OCT-17 5YN6 TITLE CRYSTAL STRUCTURE OF MERS-COV NSP10/NSP16 COMPLEX BOUND TO SAM COMPND MOL_ID: 1; COMPND 2 MOLECULE: NSP16 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: NSP10 PROTEIN; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN BETACORONAVIRUS 2C EMC/2012; SOURCE 3 ORGANISM_TAXID: 1235996; SOURCE 4 GENE: ORF1AB; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HUMAN BETACORONAVIRUS 2C EMC/2012; SOURCE 12 ORGANISM_TAXID: 1235996; SOURCE 13 GENE: ORF1AB; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 15 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS COMPLEX, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.M.WEI,L.YANG,Z.H.KE,D.Y.GUO,C.P.FAN REVDAT 2 22-NOV-23 5YN6 1 REMARK REVDAT 1 05-DEC-18 5YN6 0 JRNL AUTH S.M.WEI,L.YANG,Z.H.KE,Q.Y.LIU,Y.CHE,Z.Z.YANG,D.Y.GUO,C.P.FAN JRNL TITL STRUCTURAL INSIGHTS INTO THE MOLECULAR MECHANISM OF MERS JRNL TITL 2 CORONAVIRUS RNA RIBOSE 2'-O-METHYLATION BY NSP16/NSP10 JRNL TITL 3 PROTEIN COMPLEX JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.65 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 79674 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.740 REMARK 3 FREE R VALUE TEST SET COUNT : 3773 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.6569 - 5.8354 0.93 2623 139 0.2107 0.1979 REMARK 3 2 5.8354 - 4.6333 1.00 2811 142 0.1704 0.1912 REMARK 3 3 4.6333 - 4.0481 1.00 2848 128 0.1472 0.2046 REMARK 3 4 4.0481 - 3.6781 1.00 2808 144 0.1656 0.1678 REMARK 3 5 3.6781 - 3.4146 1.00 2831 136 0.1700 0.2377 REMARK 3 6 3.4146 - 3.2134 1.00 2770 151 0.1759 0.1890 REMARK 3 7 3.2134 - 3.0525 1.00 2853 134 0.1909 0.2548 REMARK 3 8 3.0525 - 2.9196 1.00 2801 144 0.1829 0.1796 REMARK 3 9 2.9196 - 2.8072 1.00 2839 125 0.1866 0.1773 REMARK 3 10 2.8072 - 2.7104 1.00 2847 152 0.1971 0.2825 REMARK 3 11 2.7104 - 2.6256 1.00 2795 133 0.1962 0.2583 REMARK 3 12 2.6256 - 2.5506 1.00 2840 145 0.2003 0.2595 REMARK 3 13 2.5506 - 2.4835 1.00 2769 142 0.2056 0.2785 REMARK 3 14 2.4835 - 2.4229 1.00 2829 140 0.2188 0.2681 REMARK 3 15 2.4229 - 2.3678 1.00 2822 148 0.2175 0.2411 REMARK 3 16 2.3678 - 2.3174 1.00 2879 130 0.2136 0.2286 REMARK 3 17 2.3174 - 2.2711 1.00 2800 138 0.2268 0.2683 REMARK 3 18 2.2711 - 2.2282 1.00 2815 147 0.2223 0.2907 REMARK 3 19 2.2282 - 2.1884 1.00 2827 139 0.2395 0.3692 REMARK 3 20 2.1884 - 2.1513 1.00 2796 145 0.2397 0.2614 REMARK 3 21 2.1513 - 2.1166 1.00 2851 128 0.2524 0.2381 REMARK 3 22 2.1166 - 2.0840 1.00 2777 151 0.2599 0.2848 REMARK 3 23 2.0840 - 2.0534 1.00 2823 150 0.2679 0.2823 REMARK 3 24 2.0534 - 2.0245 1.00 2828 115 0.2924 0.5047 REMARK 3 25 2.0245 - 1.9971 1.00 2820 166 0.3055 0.3003 REMARK 3 26 1.9971 - 1.9712 1.00 2829 117 0.3096 0.3249 REMARK 3 27 1.9712 - 1.9465 0.98 2770 144 0.4503 0.4930 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.800 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.018 3137 REMARK 3 ANGLE : 1.292 4267 REMARK 3 CHIRALITY : 0.091 499 REMARK 3 PLANARITY : 0.009 543 REMARK 3 DIHEDRAL : 5.038 1863 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 70.0151 87.8646 157.5553 REMARK 3 T TENSOR REMARK 3 T11: 0.3765 T22: 0.2961 REMARK 3 T33: 0.3453 T12: -0.0200 REMARK 3 T13: -0.0785 T23: -0.0215 REMARK 3 L TENSOR REMARK 3 L11: 1.5938 L22: 1.9588 REMARK 3 L33: 0.8281 L12: 0.3636 REMARK 3 L13: -0.2090 L23: 0.3830 REMARK 3 S TENSOR REMARK 3 S11: 0.0432 S12: 0.0304 S13: -0.5005 REMARK 3 S21: 0.2094 S22: -0.0579 S23: -0.1425 REMARK 3 S31: 0.3906 S32: -0.1091 S33: 0.0200 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURE FACTOR FILE CONTAINS REMARK 3 FRIEDEL PAIRS IN I_PLUS/MINUS COLUMNS REMARK 4 REMARK 4 5YN6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-NOV-17. REMARK 100 THE DEPOSITION ID IS D_1300005576. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-MAY-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9778 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 83890 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 45.570 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 11.90 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : 0.06500 REMARK 200 FOR THE DATA SET : 20.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 11.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.73900 REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 3R24 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG 5000 ME, 5%TASCIMATE, PH7.0, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,-Y,-Z+1/2 REMARK 290 4555 -X+1/2,-Y,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 33.48100 REMARK 290 SMTRY2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.90200 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 33.48100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 59.90200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 31 REMARK 465 GLN A 32 REMARK 465 SER A 33 REMARK 465 ILE A 34 REMARK 465 THR A 136 REMARK 465 LYS A 137 REMARK 465 ASN A 138 REMARK 465 VAL A 139 REMARK 465 THR A 140 REMARK 465 GLY A 141 REMARK 465 VAL A 294 REMARK 465 LEU A 295 REMARK 465 VAL A 296 REMARK 465 ASN A 297 REMARK 465 THR A 298 REMARK 465 TYR A 299 REMARK 465 ARG A 300 REMARK 465 LYS A 301 REMARK 465 LEU A 302 REMARK 465 ARG A 303 REMARK 465 ALA B 1 REMARK 465 GLY B 2 REMARK 465 SER B 3 REMARK 465 ASN B 4 REMARK 465 THR B 5 REMARK 465 GLU B 6 REMARK 465 PHE B 7 REMARK 465 ALA B 8 REMARK 465 SER B 9 REMARK 465 ASN B 10 REMARK 465 ASP B 131 REMARK 465 SER B 132 REMARK 465 LEU B 133 REMARK 465 ARG B 134 REMARK 465 GLN B 135 REMARK 465 ALA B 136 REMARK 465 ALA B 137 REMARK 465 LEU B 138 REMARK 465 PRO B 139 REMARK 465 GLN B 140 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 24 CG CD NE CZ NH1 NH2 REMARK 470 TYR A 30 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 PRO A 35 CG CD REMARK 470 MET A 36 CG SD CE REMARK 470 ARG A 38 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 146 CG CD CE NZ REMARK 470 GLU A 179 CG CD OE1 OE2 REMARK 470 LYS A 249 CG CD CE NZ REMARK 470 LYS A 263 CG CD CE NZ REMARK 470 GLU A 264 CG CD OE1 OE2 REMARK 470 THR A 287 OG1 CG2 REMARK 470 PHE B 19 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS B 91 CG CD CE NZ REMARK 470 ARG B 105 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 565 O HOH A 577 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 503 O HOH A 525 2758 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 35 N - CA - CB ANGL. DEV. = 7.5 DEGREES REMARK 500 ASP A 220 CB - CG - OD1 ANGL. DEV. = 6.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 38 28.48 -151.58 REMARK 500 ALA A 147 -94.14 -99.19 REMARK 500 LEU A 148 -138.70 58.35 REMARK 500 ASN A 210 85.94 74.01 REMARK 500 ASN A 268 -165.63 -105.20 REMARK 500 ASP A 286 -169.57 -61.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 622 DISTANCE = 6.46 ANGSTROMS REMARK 525 HOH A 623 DISTANCE = 9.30 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 74 SG REMARK 620 2 CYS B 77 SG 117.8 REMARK 620 3 HIS B 83 NE2 114.4 91.2 REMARK 620 4 CYS B 90 SG 104.6 115.1 113.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 117 SG REMARK 620 2 CYS B 120 SG 105.5 REMARK 620 3 CYS B 128 SG 112.5 103.9 REMARK 620 4 CYS B 130 SG 112.5 115.6 106.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAM A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 202 DBREF 5YN6 A 1 303 UNP K0BWD0 K0BWD0_9BETC 6776 7078 DBREF 5YN6 B 1 140 UNP K4LC41 K4LC41_9BETC 4238 4377 SEQRES 1 A 303 ALA SER ALA ASP TRP LYS PRO GLY HIS ALA MET PRO SER SEQRES 2 A 303 LEU PHE LYS VAL GLN ASN VAL ASN LEU GLU ARG CYS GLU SEQRES 3 A 303 LEU ALA ASN TYR LYS GLN SER ILE PRO MET PRO ARG GLY SEQRES 4 A 303 VAL HIS MET ASN ILE ALA LYS TYR MET GLN LEU CYS GLN SEQRES 5 A 303 TYR LEU ASN THR CYS THR LEU ALA VAL PRO ALA ASN MET SEQRES 6 A 303 ARG VAL ILE HIS PHE GLY ALA GLY SER ASP LYS GLY ILE SEQRES 7 A 303 ALA PRO GLY THR SER VAL LEU ARG GLN TRP LEU PRO THR SEQRES 8 A 303 ASP ALA ILE ILE ILE ASP ASN ASP LEU ASN GLU PHE VAL SEQRES 9 A 303 SER ASP ALA ASP ILE THR LEU PHE GLY ASP CYS VAL THR SEQRES 10 A 303 VAL ARG VAL GLY GLN GLN VAL ASP LEU VAL ILE SER ASP SEQRES 11 A 303 MET TYR ASP PRO THR THR LYS ASN VAL THR GLY SER ASN SEQRES 12 A 303 GLU SER LYS ALA LEU PHE PHE THR TYR LEU CYS ASN LEU SEQRES 13 A 303 ILE ASN ASN ASN LEU ALA LEU GLY GLY SER VAL ALA ILE SEQRES 14 A 303 LYS ILE THR GLU HIS SER TRP SER VAL GLU LEU TYR GLU SEQRES 15 A 303 LEU MET GLY LYS PHE ALA TRP TRP THR VAL PHE CYS THR SEQRES 16 A 303 ASN ALA ASN ALA SER SER SER GLU GLY PHE LEU LEU GLY SEQRES 17 A 303 ILE ASN TYR LEU GLY THR ILE LYS GLU ASN ILE ASP GLY SEQRES 18 A 303 GLY ALA MET HIS ALA ASN TYR ILE PHE TRP ARG ASN SER SEQRES 19 A 303 THR PRO MET ASN LEU SER THR TYR SER LEU PHE ASP LEU SEQRES 20 A 303 SER LYS PHE GLN LEU LYS LEU LYS GLY THR PRO VAL LEU SEQRES 21 A 303 GLN LEU LYS GLU SER GLN ILE ASN GLU LEU VAL ILE SER SEQRES 22 A 303 LEU LEU SER GLN GLY LYS LEU LEU ILE ARG ASP ASN ASP SEQRES 23 A 303 THR LEU SER VAL SER THR ASP VAL LEU VAL ASN THR TYR SEQRES 24 A 303 ARG LYS LEU ARG SEQRES 1 B 140 ALA GLY SER ASN THR GLU PHE ALA SER ASN SER SER VAL SEQRES 2 B 140 LEU SER LEU VAL ASN PHE THR VAL ASP PRO GLN LYS ALA SEQRES 3 B 140 TYR LEU ASP PHE VAL ASN ALA GLY GLY ALA PRO LEU THR SEQRES 4 B 140 ASN CYS VAL LYS MET LEU THR PRO LYS THR GLY THR GLY SEQRES 5 B 140 ILE ALA ILE SER VAL LYS PRO GLU SER THR ALA ASP GLN SEQRES 6 B 140 GLU THR TYR GLY GLY ALA SER VAL CYS LEU TYR CYS ARG SEQRES 7 B 140 ALA HIS ILE GLU HIS PRO ASP VAL SER GLY VAL CYS LYS SEQRES 8 B 140 TYR LYS GLY LYS PHE VAL GLN ILE PRO ALA GLN CYS VAL SEQRES 9 B 140 ARG ASP PRO VAL GLY PHE CYS LEU SER ASN THR PRO CYS SEQRES 10 B 140 ASN VAL CYS GLN TYR TRP ILE GLY TYR GLY CYS ASN CYS SEQRES 11 B 140 ASP SER LEU ARG GLN ALA ALA LEU PRO GLN HET SAM A 401 27 HET ZN B 201 1 HET ZN B 202 1 HETNAM SAM S-ADENOSYLMETHIONINE HETNAM ZN ZINC ION FORMUL 3 SAM C15 H22 N6 O5 S FORMUL 4 ZN 2(ZN 2+) FORMUL 6 HOH *128(H2 O) HELIX 1 AA1 ALA A 1 LYS A 6 1 6 HELIX 2 AA2 PRO A 12 VAL A 17 1 6 HELIX 3 AA3 HIS A 41 ASN A 55 1 15 HELIX 4 AA4 ALA A 79 LEU A 89 1 11 HELIX 5 AA5 ASP A 114 VAL A 116 5 3 HELIX 6 AA6 LEU A 148 ASN A 160 1 13 HELIX 7 AA7 SER A 177 MET A 184 1 8 HELIX 8 AA8 ALA A 197 ALA A 199 5 3 HELIX 9 AA9 ASP A 220 THR A 235 1 16 HELIX 10 AB1 THR A 241 PHE A 245 5 5 HELIX 11 AB2 LYS A 263 ILE A 267 5 5 HELIX 12 AB3 ASN A 268 GLN A 277 1 10 HELIX 13 AB4 SER B 12 VAL B 17 1 6 HELIX 14 AB5 ASP B 22 ALA B 33 1 12 HELIX 15 AB6 ALA B 71 VAL B 73 5 3 HELIX 16 AB7 CYS B 74 ALA B 79 1 6 HELIX 17 AB8 GLN B 102 VAL B 104 5 3 HELIX 18 AB9 ASP B 106 SER B 113 1 8 SHEET 1 AA1 8 GLY A 8 ALA A 10 0 SHEET 2 AA1 8 PHE A 187 THR A 195 -1 O CYS A 194 N HIS A 9 SHEET 3 AA1 8 GLY A 204 TYR A 211 -1 O PHE A 205 N PHE A 193 SHEET 4 AA1 8 LEU A 161 ILE A 171 -1 N ILE A 171 O GLY A 204 SHEET 5 AA1 8 VAL A 124 SER A 129 1 N VAL A 124 O ALA A 162 SHEET 6 AA1 8 ARG A 66 PHE A 70 1 N ILE A 68 O ILE A 128 SHEET 7 AA1 8 ILE A 94 ASP A 99 1 O ILE A 96 N HIS A 69 SHEET 8 AA1 8 ILE A 109 PHE A 112 1 O LEU A 111 N ASP A 97 SHEET 1 AA2 2 VAL A 118 VAL A 120 0 SHEET 2 AA2 2 VAL A 290 THR A 292 -1 O SER A 291 N ARG A 119 SHEET 1 AA3 2 VAL A 259 LEU A 260 0 SHEET 2 AA3 2 LEU A 281 ILE A 282 1 O LEU A 281 N LEU A 260 SHEET 1 AA4 3 ILE B 55 SER B 56 0 SHEET 2 AA4 3 PHE B 96 PRO B 100 -1 O PHE B 96 N SER B 56 SHEET 3 AA4 3 GLN B 65 GLY B 69 -1 N GLU B 66 O ILE B 99 LINK SG CYS B 74 ZN ZN B 201 1555 1555 2.32 LINK SG CYS B 77 ZN ZN B 201 1555 1555 2.25 LINK NE2 HIS B 83 ZN ZN B 201 1555 1555 2.43 LINK SG CYS B 90 ZN ZN B 201 1555 1555 2.42 LINK SG CYS B 117 ZN ZN B 202 1555 1555 2.42 LINK SG CYS B 120 ZN ZN B 202 1555 1555 2.28 LINK SG CYS B 128 ZN ZN B 202 1555 1555 2.37 LINK SG CYS B 130 ZN ZN B 202 1555 1555 2.39 SITE 1 AC1 17 ASN A 43 TYR A 47 GLY A 71 GLY A 73 SITE 2 AC1 17 PRO A 80 GLY A 81 ASN A 98 ASP A 99 SITE 3 AC1 17 LEU A 100 ASN A 101 ASP A 114 CYS A 115 SITE 4 AC1 17 ASP A 130 MET A 131 TYR A 132 HOH A 502 SITE 5 AC1 17 HOH A 563 SITE 1 AC2 4 CYS B 74 CYS B 77 HIS B 83 CYS B 90 SITE 1 AC3 4 CYS B 117 CYS B 120 CYS B 128 CYS B 130 CRYST1 66.962 70.171 119.804 90.00 90.00 90.00 P 21 2 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014934 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014251 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008347 0.00000