HEADER HYDROLASE 24-OCT-17 5YND TITLE CRYSTAL STRUCTURE OF PULLULANASE FROM KLEBSIELLA PNEUMONIAE COMPLEX AT TITLE 2 1 MM GAMMA-CYCLODEXTRIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: DUF3372 DOMAIN-CONTAINING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PULA PROTEIN,PULLULANASE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLEBSIELLA PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 573; SOURCE 4 ATCC: 9621 KEYWDS HYDROLASE, ALPHA-AMYLASE, PULLULANASE, KLEBSIELLA PNEUMONIAE, KEYWDS 2 CRYSTAL, GAMMA-CYCLODEXTRIN, CO-CRYSTALLIZATION EXPDTA X-RAY DIFFRACTION AUTHOR N.SAKA,H.IWAMOTO,N.TAKAHASHI,K.MIZUTANI,B.MIKAMI REVDAT 4 22-NOV-23 5YND 1 HETSYN LINK REVDAT 3 29-JUL-20 5YND 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE ATOM REVDAT 2 14-NOV-18 5YND 1 JRNL REVDAT 1 24-OCT-18 5YND 0 JRNL AUTH N.SAKA,H.IWAMOTO,D.MALLE,N.TAKAHASHI,K.MIZUTANI,B.MIKAMI JRNL TITL ELUCIDATION OF THE MECHANISM OF INTERACTION BETWEEN JRNL TITL 2 KLEBSIELLA PNEUMONIAE PULLULANASE AND CYCLODEXTRIN JRNL REF ACTA CRYSTALLOGR D STRUCT V. 74 1115 2018 JRNL REF 2 BIOL JRNL REFN ISSN 2059-7983 JRNL PMID 30387770 JRNL DOI 10.1107/S2059798318014523 REMARK 2 REMARK 2 RESOLUTION. 2.23 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.23 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.39 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 59280 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 2991 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.3953 - 6.1390 0.97 2936 133 0.1633 0.1939 REMARK 3 2 6.1390 - 4.8747 0.99 2749 167 0.1651 0.1901 REMARK 3 3 4.8747 - 4.2590 0.99 2748 133 0.1417 0.1653 REMARK 3 4 4.2590 - 3.8699 1.00 2705 155 0.1616 0.2300 REMARK 3 5 3.8699 - 3.5926 1.00 2719 127 0.1793 0.2342 REMARK 3 6 3.5926 - 3.3809 1.00 2701 147 0.1894 0.2215 REMARK 3 7 3.3809 - 3.2116 1.00 2654 163 0.2016 0.2432 REMARK 3 8 3.2116 - 3.0719 1.00 2673 150 0.2134 0.2897 REMARK 3 9 3.0719 - 2.9536 1.00 2673 141 0.2084 0.2588 REMARK 3 10 2.9536 - 2.8517 1.00 2677 138 0.2109 0.2392 REMARK 3 11 2.8517 - 2.7626 1.00 2663 141 0.2094 0.3302 REMARK 3 12 2.7626 - 2.6836 1.00 2635 136 0.2182 0.3035 REMARK 3 13 2.6836 - 2.6130 1.00 2635 153 0.2263 0.3330 REMARK 3 14 2.6130 - 2.5492 1.00 2670 145 0.2380 0.2587 REMARK 3 15 2.5492 - 2.4913 1.00 2665 142 0.2363 0.3202 REMARK 3 16 2.4913 - 2.4383 1.00 2631 146 0.2372 0.3142 REMARK 3 17 2.4383 - 2.3895 1.00 2640 133 0.2396 0.2935 REMARK 3 18 2.3895 - 2.3444 1.00 2652 134 0.2379 0.3126 REMARK 3 19 2.3444 - 2.3025 1.00 2637 142 0.2514 0.3423 REMARK 3 20 2.3025 - 2.2635 1.00 2630 142 0.2525 0.3353 REMARK 3 21 2.2635 - 2.2270 0.99 2596 123 0.2391 0.3142 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.740 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 8503 REMARK 3 ANGLE : 0.865 11588 REMARK 3 CHIRALITY : 0.052 1301 REMARK 3 PLANARITY : 0.005 1524 REMARK 3 DIHEDRAL : 17.904 5081 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5YND COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-OCT-17. REMARK 100 THE DEPOSITION ID IS D_1300005584. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-JUL-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL26B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59330 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.227 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : 0.08397 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.8600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.23 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.31 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 5.80 REMARK 200 R MERGE FOR SHELL (I) : 0.51350 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.770 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2FGZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M MAGNESIUM SULFATE, 20%(W/V) REMARK 280 PEG3350, PH 6.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 149.18950 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 44.38650 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 44.38650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 223.78425 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 44.38650 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 44.38650 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 74.59475 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 44.38650 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 44.38650 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 223.78425 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 44.38650 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 44.38650 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 74.59475 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 149.18950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 90 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 37070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -18 REMARK 465 LEU A -17 REMARK 465 ARG A -16 REMARK 465 TYR A -15 REMARK 465 THR A -14 REMARK 465 CYS A -13 REMARK 465 HIS A -12 REMARK 465 ALA A -11 REMARK 465 LEU A -10 REMARK 465 PHE A -9 REMARK 465 LEU A -8 REMARK 465 GLY A -7 REMARK 465 SER A -6 REMARK 465 LEU A -5 REMARK 465 VAL A -4 REMARK 465 LEU A -3 REMARK 465 LEU A -2 REMARK 465 SER A -1 REMARK 465 GLY A 0 REMARK 465 CYS A 1 REMARK 465 ASP A 2 REMARK 465 ASN A 3 REMARK 465 SER A 4 REMARK 465 SER A 5 REMARK 465 SER A 6 REMARK 465 SER A 7 REMARK 465 SER A 8 REMARK 465 THR A 9 REMARK 465 SER A 10 REMARK 465 GLY A 11 REMARK 465 SER A 12 REMARK 465 PRO A 13 REMARK 465 GLY A 14 REMARK 465 SER A 15 REMARK 465 PRO A 16 REMARK 465 GLY A 17 REMARK 465 ASN A 18 REMARK 465 PRO A 19 REMARK 465 GLY A 20 REMARK 465 ASN A 21 REMARK 465 PRO A 22 REMARK 465 GLY A 23 REMARK 465 THR A 24 REMARK 465 PRO A 25 REMARK 465 GLY A 26 REMARK 465 THR A 27 REMARK 465 PRO A 28 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO A 478 CD PRO A 478 N -0.249 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 30 -74.24 -53.71 REMARK 500 GLN A 31 -169.66 -78.41 REMARK 500 ASP A 32 151.59 78.01 REMARK 500 SER A 66 -128.00 68.75 REMARK 500 SER A 67 -120.22 56.82 REMARK 500 ASN A 82 -141.75 -122.35 REMARK 500 ALA A 93 33.45 -91.50 REMARK 500 ASP A 106 -152.62 -136.62 REMARK 500 LEU A 176 -162.14 62.37 REMARK 500 ALA A 177 61.52 -159.94 REMARK 500 ASP A 211 -158.38 -86.60 REMARK 500 SER A 273 -86.05 -75.61 REMARK 500 THR A 302 -169.59 -123.10 REMARK 500 LYS A 327 36.88 71.00 REMARK 500 GLN A 415 25.98 -143.67 REMARK 500 PRO A 478 111.96 -38.68 REMARK 500 VAL A 619 -63.69 -107.38 REMARK 500 CYS A 643 -35.12 140.51 REMARK 500 CYS A 644 -115.91 -134.52 REMARK 500 TRP A 708 -32.19 -152.54 REMARK 500 TRP A 708 -97.07 -97.55 REMARK 500 ASP A 709 -99.98 -97.93 REMARK 500 SER A 710 -79.04 74.43 REMARK 500 ASN A 835 173.36 73.64 REMARK 500 SER A 922 0.68 -66.48 REMARK 500 ALA A 998 -54.29 71.57 REMARK 500 SER A1001 89.46 -68.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1103 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 148 OD2 REMARK 620 2 HOH A1203 O 73.2 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1102 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 481 OD1 REMARK 620 2 LEU A 482 O 90.9 REMARK 620 3 GLU A 487 OE2 89.3 176.9 REMARK 620 4 GLU A 568 OE2 88.6 98.0 85.1 REMARK 620 5 HOH A1230 O 170.0 80.4 99.6 87.8 REMARK 620 6 HOH A1350 O 89.8 90.8 86.1 171.0 95.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1101 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 550 O REMARK 620 2 ASP A 553 OD1 86.3 REMARK 620 3 TYR A 555 O 177.9 91.8 REMARK 620 4 ASP A 893 OD1 86.9 144.7 95.1 REMARK 620 5 HOH A1242 O 88.3 72.8 90.4 141.6 REMARK 620 6 HOH A1369 O 93.9 73.9 86.3 72.1 146.4 REMARK 620 7 HOH A1444 O 98.1 138.0 82.8 77.2 65.7 146.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1104 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 994 OD2 REMARK 620 2 SER A1001 OG 80.2 REMARK 620 3 ASP A1003 O 66.1 60.5 REMARK 620 4 VAL A1006 O 75.9 129.2 68.9 REMARK 620 5 GLN A1070 OE1 128.8 82.5 63.4 78.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1105 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A1211 O REMARK 620 2 HOH A1215 O 136.9 REMARK 620 3 HOH A1338 O 83.6 65.9 REMARK 620 4 HOH A1484 O 73.5 66.2 64.6 REMARK 620 N 1 2 3 DBREF 5YND A -18 1083 UNP W9BQ28 W9BQ28_KLEPN 1 1102 SEQADV 5YND LEU A 680 UNP W9BQ28 GLY 699 CONFLICT SEQRES 1 A 1102 MET LEU ARG TYR THR CYS HIS ALA LEU PHE LEU GLY SER SEQRES 2 A 1102 LEU VAL LEU LEU SER GLY CYS ASP ASN SER SER SER SER SEQRES 3 A 1102 SER THR SER GLY SER PRO GLY SER PRO GLY ASN PRO GLY SEQRES 4 A 1102 ASN PRO GLY THR PRO GLY THR PRO ASP PRO GLN ASP VAL SEQRES 5 A 1102 VAL VAL ARG LEU PRO ASP VAL ALA VAL PRO GLY GLU ALA SEQRES 6 A 1102 VAL GLN ALA SER ALA ARG GLN ALA VAL ILE HIS LEU VAL SEQRES 7 A 1102 ASP ILE ALA GLY ILE THR SER SER THR PRO ALA ASP TYR SEQRES 8 A 1102 ALA THR LYS ASN LEU TYR LEU TRP ASN ASN GLU THR CYS SEQRES 9 A 1102 ASP ALA LEU SER ALA PRO VAL ALA ASP TRP ASN ASP VAL SEQRES 10 A 1102 SER THR THR PRO THR GLY SER ASP LYS TYR GLY PRO TYR SEQRES 11 A 1102 TRP VAL ILE PRO LEU THR LYS GLU SER GLY CYS ILE ASN SEQRES 12 A 1102 VAL ILE VAL ARG ASP GLY THR ASN LYS LEU ILE ASP SER SEQRES 13 A 1102 ASP LEU ARG VAL SER PHE SER ASP PHE THR ASP ARG THR SEQRES 14 A 1102 VAL SER VAL ILE ALA GLY ASN SER ALA VAL TYR ASP SER SEQRES 15 A 1102 ARG ALA ASP ALA PHE ARG ALA ALA PHE GLY VAL ALA LEU SEQRES 16 A 1102 ALA ASP ALA HIS TRP VAL ASP LYS THR THR LEU LEU TRP SEQRES 17 A 1102 PRO GLY GLY GLU ASN LYS PRO ILE VAL ARG LEU TYR TYR SEQRES 18 A 1102 SER HIS SER SER LYS VAL ALA ALA ASP SER ASN GLY GLU SEQRES 19 A 1102 PHE SER ASP LYS TYR VAL LYS LEU THR PRO THR THR VAL SEQRES 20 A 1102 ASN GLN GLN VAL SER MET ARG PHE PRO HIS LEU ALA SER SEQRES 21 A 1102 TYR PRO ALA PHE LYS LEU PRO ASP ASP VAL ASN VAL ASP SEQRES 22 A 1102 GLU LEU LEU GLN GLY GLU THR VAL ALA ILE ALA ALA GLU SEQRES 23 A 1102 SER ASP GLY ILE LEU SER SER ALA THR GLN VAL GLN THR SEQRES 24 A 1102 ALA GLY VAL LEU ASP ASP THR TYR ALA ALA ALA ALA GLU SEQRES 25 A 1102 ALA LEU SER TYR GLY ALA GLN LEU THR ASP SER GLY VAL SEQRES 26 A 1102 THR PHE ARG VAL TRP ALA PRO THR ALA GLN GLN VAL GLU SEQRES 27 A 1102 LEU VAL ILE TYR SER ALA ASP LYS LYS VAL ILE ALA SER SEQRES 28 A 1102 HIS PRO MET THR ARG ASP SER ALA SER GLY ALA TRP SER SEQRES 29 A 1102 TRP GLN GLY GLY SER ASP LEU LYS GLY ALA PHE TYR ARG SEQRES 30 A 1102 TYR ALA MET THR VAL TYR HIS PRO GLN SER ARG LYS VAL SEQRES 31 A 1102 GLU GLN TYR GLU VAL THR ASP PRO TYR ALA HIS SER LEU SEQRES 32 A 1102 SER THR ASN SER GLU TYR SER GLN VAL VAL ASP LEU ASN SEQRES 33 A 1102 ASP SER ALA LEU LYS PRO GLU GLY TRP ASP GLY LEU THR SEQRES 34 A 1102 MET PRO HIS ALA GLN LYS THR LYS ALA ASP LEU ALA LYS SEQRES 35 A 1102 MET THR ILE HIS GLU SER HIS ILE ARG ASP LEU SER ALA SEQRES 36 A 1102 TRP ASP GLN THR VAL PRO ALA GLU LEU ARG GLY LYS TYR SEQRES 37 A 1102 LEU ALA LEU THR ALA GLN GLU SER ASN MET VAL GLN HIS SEQRES 38 A 1102 LEU LYS GLN LEU SER ALA SER GLY VAL THR HIS ILE GLU SEQRES 39 A 1102 LEU LEU PRO VAL PHE ASP LEU ALA THR VAL ASN GLU PHE SEQRES 40 A 1102 SER ASP LYS VAL ALA ASP ILE GLN GLN PRO PHE SER ARG SEQRES 41 A 1102 LEU CYS GLU VAL ASN SER ALA VAL LYS SER SER GLU PHE SEQRES 42 A 1102 ALA GLY TYR CYS ASP SER GLY SER THR VAL GLU GLU VAL SEQRES 43 A 1102 LEU THR GLN LEU LYS GLN ASN ASP SER LYS ASP ASN PRO SEQRES 44 A 1102 GLN VAL GLN ALA LEU ASN THR LEU VAL ALA GLN THR ASP SEQRES 45 A 1102 SER TYR ASN TRP GLY TYR ASP PRO PHE HIS TYR THR VAL SEQRES 46 A 1102 PRO GLU GLY SER TYR ALA THR ASP PRO GLU GLY THR ALA SEQRES 47 A 1102 ARG ILE LYS GLU PHE ARG THR MET ILE GLN ALA ILE LYS SEQRES 48 A 1102 GLN ASP LEU GLY MET ASN VAL ILE MET ASP VAL VAL TYR SEQRES 49 A 1102 ASN HIS THR ASN ALA ALA GLY PRO THR ASP ARG THR SER SEQRES 50 A 1102 VAL LEU ASP LYS ILE VAL PRO TRP TYR TYR GLN ARG LEU SEQRES 51 A 1102 ASN GLU THR THR GLY SER VAL GLU SER ALA THR CYS CYS SEQRES 52 A 1102 SER ASP SER ALA PRO GLU HIS ARG MET PHE ALA LYS LEU SEQRES 53 A 1102 ILE ALA ASP SER LEU ALA VAL TRP THR THR ASP TYR LYS SEQRES 54 A 1102 ILE ASP GLY PHE ARG PHE ASP LEU MET LEU TYR HIS PRO SEQRES 55 A 1102 LYS ALA GLN ILE LEU SER ALA TRP GLU ARG ILE LYS ALA SEQRES 56 A 1102 LEU ASN PRO ASP ILE TYR PHE PHE GLY GLU GLY TRP ASP SEQRES 57 A 1102 SER ASN GLN SER ASP ARG PHE GLU ILE ALA SER GLN ILE SEQRES 58 A 1102 ASN LEU LYS GLY THR GLY ILE GLY THR PHE SER ASP ARG SEQRES 59 A 1102 LEU ARG ASP ALA VAL ARG GLY GLY GLY PRO PHE ASP SER SEQRES 60 A 1102 GLY ASP ALA LEU ARG GLN ASN GLN GLY VAL GLY SER GLY SEQRES 61 A 1102 ALA GLY VAL LEU PRO ASN GLU LEU THR THR LEU SER ASP SEQRES 62 A 1102 ASP GLN ALA ARG HIS LEU ALA ASP LEU THR ARG LEU GLY SEQRES 63 A 1102 MET ALA GLY ASN LEU ALA ASP PHE VAL LEU ILE ASP LYS SEQRES 64 A 1102 ASP GLY ALA VAL LYS ARG GLY SER GLU ILE ASP TYR ASN SEQRES 65 A 1102 GLY ALA PRO GLY GLY TYR ALA ALA ASP PRO THR GLU VAL SEQRES 66 A 1102 VAL ASN TYR VAL SER LYS HIS ASP ASN GLN THR LEU TRP SEQRES 67 A 1102 ASP MET ILE SER TYR LYS ALA ALA GLN GLU ALA ASP LEU SEQRES 68 A 1102 ASP THR ARG VAL ARG MET GLN ALA VAL SER LEU ALA THR SEQRES 69 A 1102 VAL MET LEU GLY GLN GLY ILE ALA PHE ASP GLN GLN GLY SEQRES 70 A 1102 SER GLU LEU LEU ARG SER LYS SER PHE THR ARG ASP SER SEQRES 71 A 1102 TYR ASP SER GLY ASP TRP PHE ASN ARG VAL ASP TYR SER SEQRES 72 A 1102 LEU GLN ASP ASN ASN TYR ASN VAL GLY MET PRO ARG SER SEQRES 73 A 1102 SER ASP ASP GLY SER ASN TYR ASP ILE ILE ALA ARG VAL SEQRES 74 A 1102 LYS ASP ALA VAL ALA THR PRO GLY GLU THR GLU LEU LYS SEQRES 75 A 1102 GLN MET THR ALA PHE TYR GLN GLU LEU THR ALA LEU ARG SEQRES 76 A 1102 LYS SER SER PRO LEU PHE THR LEU GLY ASP GLY ALA THR SEQRES 77 A 1102 VAL MET LYS ARG VAL ASP PHE ARG ASN THR GLY ALA ASP SEQRES 78 A 1102 GLN GLN THR GLY LEU LEU VAL MET THR ILE ASP ASP GLY SEQRES 79 A 1102 MET GLN ALA GLY ALA SER LEU ASP SER ARG VAL ASP GLY SEQRES 80 A 1102 ILE VAL VAL ALA ILE ASN ALA ALA PRO GLU SER ARG THR SEQRES 81 A 1102 LEU GLN ASP PHE ALA GLY THR SER LEU GLN LEU SER ALA SEQRES 82 A 1102 ILE GLN GLN ALA ALA GLY ASP ARG SER LEU ALA SER GLY SEQRES 83 A 1102 VAL GLN VAL ALA ALA ASP GLY SER VAL THR LEU PRO ALA SEQRES 84 A 1102 TRP SER VAL ALA VAL LEU GLU LEU PRO GLN GLY GLU SER SEQRES 85 A 1102 GLN GLY ALA GLY LEU PRO VAL SER SER LYS HET GLC B 1 12 HET GLC B 2 11 HET GLC B 3 11 HET GLC B 4 11 HET CA A1101 1 HET CA A1102 1 HET CA A1103 1 HET CA A1104 1 HET CA A1105 1 HET PEG A1106 7 HET PEG A1107 7 HET GOL A1108 6 HET GOL A1109 6 HET GOL A1110 6 HET GOL A1111 6 HET GOL A1112 6 HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM CA CALCIUM ION HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM GOL GLYCEROL HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GLC 4(C6 H12 O6) FORMUL 3 CA 5(CA 2+) FORMUL 8 PEG 2(C4 H10 O3) FORMUL 10 GOL 5(C3 H8 O3) FORMUL 15 HOH *290(H2 O) HELIX 1 AA1 ASP A 60 THR A 65 1 6 HELIX 2 AA2 SER A 163 GLY A 173 1 11 HELIX 3 AA3 ASN A 229 PHE A 236 1 8 HELIX 4 AA4 PRO A 237 ALA A 240 5 4 HELIX 5 AA5 ASN A 252 LEU A 257 1 6 HELIX 6 AA6 THR A 280 ALA A 294 1 15 HELIX 7 AA7 GLY A 349 LYS A 353 5 5 HELIX 8 AA8 SER A 385 GLU A 389 5 5 HELIX 9 AA9 ASP A 398 LYS A 402 5 5 HELIX 10 AB1 GLY A 405 LEU A 409 5 5 HELIX 11 AB2 THR A 417 LYS A 423 1 7 HELIX 12 AB3 HIS A 430 ALA A 436 1 7 HELIX 13 AB4 PRO A 442 ARG A 446 5 5 HELIX 14 AB5 LYS A 448 ALA A 454 5 7 HELIX 15 AB6 SER A 457 SER A 469 1 13 HELIX 16 AB7 PHE A 488 VAL A 492 5 5 HELIX 17 AB8 PRO A 498 ASN A 506 1 9 HELIX 18 AB9 ASN A 506 SER A 511 1 6 HELIX 19 AC1 PHE A 514 SER A 520 5 7 HELIX 20 AC2 THR A 523 LYS A 532 1 10 HELIX 21 AC3 PRO A 540 ASP A 553 1 14 HELIX 22 AC4 THR A 578 ASP A 594 1 17 HELIX 23 AC5 VAL A 619 VAL A 624 1 6 HELIX 24 AC6 HIS A 651 LYS A 670 1 20 HELIX 25 AC7 LEU A 678 HIS A 682 5 5 HELIX 26 AC8 PRO A 683 ASN A 698 1 16 HELIX 27 AC9 SER A 733 GLY A 742 1 10 HELIX 28 AD1 ASP A 750 ASN A 755 1 6 HELIX 29 AD2 GLY A 757 GLY A 761 5 5 HELIX 30 AD3 SER A 773 ALA A 789 1 17 HELIX 31 AD4 ASP A 822 THR A 824 5 3 HELIX 32 AD5 THR A 837 ALA A 846 1 10 HELIX 33 AD6 ASP A 851 LEU A 868 1 18 HELIX 34 AD7 GLY A 878 LEU A 882 5 5 HELIX 35 AD8 SER A 894 ARG A 900 1 7 HELIX 36 AD9 ARG A 916 GLY A 921 1 6 HELIX 37 AE1 ASN A 923 ASP A 932 1 10 HELIX 38 AE2 GLY A 938 LYS A 957 1 20 HELIX 39 AE3 SER A 959 LEU A 964 5 6 HELIX 40 AE4 ASP A 966 ARG A 973 1 8 HELIX 41 AE5 SER A 1033 GLY A 1040 1 8 HELIX 42 AE6 ASP A 1041 SER A 1043 5 3 SHEET 1 AA1 4 GLY A 104 ASP A 106 0 SHEET 2 AA1 4 GLY A 109 PRO A 115 -1 O TYR A 111 N GLY A 104 SHEET 3 AA1 4 GLN A 53 LEU A 58 -1 N ALA A 54 O ILE A 114 SHEET 4 AA1 4 THR A 150 VAL A 153 1 O VAL A 151 N HIS A 57 SHEET 1 AA2 3 LYS A 75 TRP A 80 0 SHEET 2 AA2 3 CYS A 122 ASP A 129 -1 O ILE A 126 N TYR A 78 SHEET 3 AA2 3 ASN A 132 LYS A 133 -1 O ASN A 132 N ASP A 129 SHEET 1 AA3 3 LYS A 75 TRP A 80 0 SHEET 2 AA3 3 CYS A 122 ASP A 129 -1 O ILE A 126 N TYR A 78 SHEET 3 AA3 3 LEU A 139 SER A 142 -1 O LEU A 139 N VAL A 125 SHEET 1 AA4 8 LYS A 219 LYS A 222 0 SHEET 2 AA4 8 ILE A 197 SER A 203 -1 N LEU A 200 O VAL A 221 SHEET 3 AA4 8 GLU A 260 ALA A 266 -1 O ILE A 264 N ARG A 199 SHEET 4 AA4 8 LEU A 272 GLN A 279 -1 O SER A 273 N ALA A 265 SHEET 5 AA4 8 ALA A 179 TRP A 181 1 N ALA A 179 O GLN A 279 SHEET 6 AA4 8 THR A 186 LEU A 188 -1 O LEU A 188 N HIS A 180 SHEET 7 AA4 8 ALA A 244 LYS A 246 -1 O PHE A 245 N LEU A 187 SHEET 8 AA4 8 THR A 224 THR A 226 -1 N THR A 224 O LYS A 246 SHEET 1 AA5 4 GLY A 298 LEU A 301 0 SHEET 2 AA5 4 VAL A 306 TRP A 311 -1 O THR A 307 N GLN A 300 SHEET 3 AA5 4 ALA A 343 GLY A 348 -1 O TRP A 346 N PHE A 308 SHEET 4 AA5 4 THR A 336 ARG A 337 -1 N THR A 336 O SER A 345 SHEET 1 AA6 4 VAL A 329 PRO A 334 0 SHEET 2 AA6 4 GLN A 317 TYR A 323 -1 N LEU A 320 O HIS A 333 SHEET 3 AA6 4 PHE A 356 HIS A 365 -1 O ALA A 360 N GLU A 319 SHEET 4 AA6 4 LYS A 370 VAL A 376 -1 O GLU A 372 N VAL A 363 SHEET 1 AA7 4 VAL A 329 PRO A 334 0 SHEET 2 AA7 4 GLN A 317 TYR A 323 -1 N LEU A 320 O HIS A 333 SHEET 3 AA7 4 PHE A 356 HIS A 365 -1 O ALA A 360 N GLU A 319 SHEET 4 AA7 4 SER A 391 GLN A 392 -1 O SER A 391 N TYR A 357 SHEET 1 AA8 9 THR A 425 SER A 429 0 SHEET 2 AA8 9 HIS A 473 LEU A 476 1 O GLU A 475 N SER A 429 SHEET 3 AA8 9 ASN A 598 VAL A 603 1 O ILE A 600 N ILE A 474 SHEET 4 AA8 9 GLY A 673 PHE A 676 1 O ARG A 675 N VAL A 603 SHEET 5 AA8 9 TYR A 702 GLY A 705 1 O PHE A 704 N PHE A 676 SHEET 6 AA8 9 GLY A 730 PHE A 732 1 O GLY A 730 N PHE A 703 SHEET 7 AA8 9 VAL A 826 ASN A 828 1 O VAL A 827 N THR A 731 SHEET 8 AA8 9 ILE A 872 GLN A 876 1 O ILE A 872 N ASN A 828 SHEET 9 AA8 9 THR A 425 SER A 429 1 N ILE A 426 O ALA A 873 SHEET 1 AA9 2 PHE A 480 LEU A 482 0 SHEET 2 AA9 2 PRO A 561 PRO A 567 -1 O PHE A 562 N ASP A 481 SHEET 1 AB1 2 HIS A 607 THR A 608 0 SHEET 2 AB1 2 SER A 645 ASP A 646 -1 O SER A 645 N THR A 608 SHEET 1 AB2 2 VAL A 796 ILE A 798 0 SHEET 2 AB2 2 VAL A 804 ARG A 806 -1 O LYS A 805 N LEU A 797 SHEET 1 AB3 2 ASP A 811 TYR A 812 0 SHEET 2 AB3 2 ALA A 815 PRO A 816 -1 O ALA A 815 N TYR A 812 SHEET 1 AB4 5 VAL A 974 ARG A 977 0 SHEET 2 AB4 5 LEU A 987 ASP A 993 -1 O THR A 991 N ASP A 975 SHEET 3 AB4 5 VAL A1006 ASN A1014 -1 O ILE A1013 N LEU A 988 SHEET 4 AB4 5 SER A1062 PRO A1069 -1 O LEU A1066 N VAL A1010 SHEET 5 AB4 5 GLN A1031 LEU A1032 -1 N GLN A1031 O GLU A1067 SHEET 1 AB5 3 ARG A1020 LEU A1022 0 SHEET 2 AB5 3 VAL A1056 LEU A1058 -1 O LEU A1058 N ARG A1020 SHEET 3 AB5 3 GLN A1049 VAL A1050 -1 N GLN A1049 O THR A1057 SSBOND 1 CYS A 85 CYS A 122 1555 1555 2.04 SSBOND 2 CYS A 503 CYS A 518 1555 1555 2.05 SSBOND 3 CYS A 643 CYS A 644 1555 1555 2.06 LINK O4 GLC B 1 C1 GLC B 2 1555 1555 1.46 LINK O4 GLC B 2 C1 GLC B 3 1555 1555 1.45 LINK O4 GLC B 3 C1 GLC B 4 1555 1555 1.45 LINK OD2 ASP A 148 CA CA A1103 1555 1555 2.36 LINK OD1 ASP A 481 CA CA A1102 1555 1555 2.35 LINK O LEU A 482 CA CA A1102 1555 1555 2.23 LINK OE2 GLU A 487 CA CA A1102 1555 1555 2.29 LINK O ALA A 550 CA CA A1101 1555 1555 2.48 LINK OD1 ASP A 553 CA CA A1101 1555 1555 2.42 LINK O TYR A 555 CA CA A1101 1555 1555 2.33 LINK OE2 GLU A 568 CA CA A1102 1555 1555 2.40 LINK OD1 ASP A 893 CA CA A1101 1555 1555 2.33 LINK OD2 ASP A 994 CA CA A1104 1555 1555 2.34 LINK OG SER A1001 CA CA A1104 1555 1555 2.55 LINK O ASP A1003 CA CA A1104 1555 1555 2.59 LINK O VAL A1006 CA CA A1104 1555 1555 2.48 LINK OE1 GLN A1070 CA CA A1104 1555 1555 2.69 LINK CA CA A1101 O HOH A1242 1555 1555 2.48 LINK CA CA A1101 O HOH A1369 1555 1555 2.48 LINK CA CA A1101 O HOH A1444 1555 1555 2.57 LINK CA CA A1102 O HOH A1230 1555 1555 2.24 LINK CA CA A1102 O HOH A1350 1555 1555 2.32 LINK CA CA A1103 O HOH A1203 1555 1555 2.41 LINK CA CA A1105 O HOH A1211 1555 1555 2.25 LINK CA CA A1105 O HOH A1215 1555 1555 2.41 LINK CA CA A1105 O HOH A1338 1555 1555 2.46 LINK CA CA A1105 O HOH A1484 1555 1555 2.22 CRYST1 88.773 88.773 298.379 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011265 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011265 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003351 0.00000