HEADER TRANSFERASE 24-OCT-17 5YNM TITLE CRYSTAL STRUCTURE OF MERS-COV NSP16/NSP10 COMPLEX BOUND TO SAM AND TITLE 2 M7GPPPA COMPND MOL_ID: 1; COMPND 2 MOLECULE: NSP16 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: NSP10 PROTEIN; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN BETACORONAVIRUS 2C EMC/2012; SOURCE 3 ORGANISM_TAXID: 1235996; SOURCE 4 GENE: ORF1AB; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HUMAN BETACORONAVIRUS 2C EMC/2012; SOURCE 12 ORGANISM_TAXID: 1235996; SOURCE 13 GENE: ORF1AB; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 15 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS INHIBITOR, COFACTOR, COMPLEX, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.M.WEI,L.YANG,Z.H.KE,D.Y.GUO,C.P.FAN REVDAT 2 22-NOV-23 5YNM 1 REMARK REVDAT 1 05-DEC-18 5YNM 0 JRNL AUTH S.M.WEI,L.YANG,Z.H.KE,Q.Y.LIU,Z.Z.YANG,Y.CHEN,D.Y.GUO, JRNL AUTH 2 C.P.FAN JRNL TITL STRUCTURAL INSIGHTS INTO THE MOLECULAR MECHANISM OF MERS JRNL TITL 2 CORONAVIRUS RNA RIBOSE 2'-O-METHYLATION BY NSP16/NSP10 JRNL TITL 3 PROTEIN COMPLEX JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.68 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.68 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.76 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 125786 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.010 REMARK 3 FREE R VALUE TEST SET COUNT : 3788 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.7687 - 5.0257 0.90 4077 125 0.1904 0.1954 REMARK 3 2 5.0257 - 3.9909 0.98 4474 141 0.1353 0.1405 REMARK 3 3 3.9909 - 3.4870 1.00 4530 146 0.1443 0.1238 REMARK 3 4 3.4870 - 3.1684 1.00 4532 148 0.1608 0.1771 REMARK 3 5 3.1684 - 2.9414 1.00 4522 142 0.1668 0.2160 REMARK 3 6 2.9414 - 2.7681 1.00 4571 139 0.1719 0.2216 REMARK 3 7 2.7681 - 2.6295 1.00 4521 142 0.1780 0.2169 REMARK 3 8 2.6295 - 2.5151 1.00 4561 131 0.1728 0.2016 REMARK 3 9 2.5151 - 2.4183 1.00 4553 139 0.1821 0.2148 REMARK 3 10 2.4183 - 2.3348 1.00 4520 146 0.1819 0.2257 REMARK 3 11 2.3348 - 2.2618 1.00 4541 127 0.1791 0.2080 REMARK 3 12 2.2618 - 2.1972 1.00 4587 156 0.1742 0.2249 REMARK 3 13 2.1972 - 2.1394 1.00 4565 125 0.1753 0.2051 REMARK 3 14 2.1394 - 2.0872 1.00 4534 137 0.1733 0.2405 REMARK 3 15 2.0872 - 2.0397 1.00 4544 148 0.1782 0.1451 REMARK 3 16 2.0397 - 1.9963 1.00 4539 154 0.1797 0.2503 REMARK 3 17 1.9963 - 1.9564 1.00 4544 142 0.2038 0.2203 REMARK 3 18 1.9564 - 1.9195 1.00 4534 136 0.2356 0.2328 REMARK 3 19 1.9195 - 1.8852 1.00 4508 151 0.2442 0.3015 REMARK 3 20 1.8852 - 1.8532 1.00 4592 134 0.2607 0.3043 REMARK 3 21 1.8532 - 1.8234 1.00 4518 145 0.2843 0.3244 REMARK 3 22 1.8234 - 1.7953 1.00 4540 133 0.2924 0.3601 REMARK 3 23 1.7953 - 1.7689 1.00 4560 148 0.3070 0.3170 REMARK 3 24 1.7689 - 1.7440 1.00 4532 131 0.3245 0.3505 REMARK 3 25 1.7440 - 1.7204 1.00 4557 142 0.3492 0.3211 REMARK 3 26 1.7204 - 1.6981 1.00 4530 131 0.3690 0.3593 REMARK 3 27 1.6981 - 1.6769 0.96 4412 149 0.4437 0.4785 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.060 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.016 3283 REMARK 3 ANGLE : 1.364 4470 REMARK 3 CHIRALITY : 0.098 518 REMARK 3 PLANARITY : 0.009 558 REMARK 3 DIHEDRAL : 8.095 1987 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 71.2223 87.6925 157.0696 REMARK 3 T TENSOR REMARK 3 T11: 0.2421 T22: 0.2050 REMARK 3 T33: 0.2319 T12: -0.0047 REMARK 3 T13: -0.0498 T23: -0.0207 REMARK 3 L TENSOR REMARK 3 L11: 1.3563 L22: 1.7590 REMARK 3 L33: 0.6425 L12: 0.2040 REMARK 3 L13: -0.4069 L23: 0.0866 REMARK 3 S TENSOR REMARK 3 S11: -0.0414 S12: 0.0357 S13: -0.3443 REMARK 3 S21: 0.0376 S22: 0.0095 S23: -0.1215 REMARK 3 S31: 0.2374 S32: -0.0389 S33: 0.0207 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURE FACTOR FILE CONTAINS REMARK 3 FRIEDEL PAIRS IN I_PLUS/MINUS COLUMNS REMARK 4 REMARK 4 5YNM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-NOV-17. REMARK 100 THE DEPOSITION ID IS D_1300005597. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-MAY-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9778 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 131556 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.680 REMARK 200 RESOLUTION RANGE LOW (A) : 45.610 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 11.80 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : 0.05800 REMARK 200 FOR THE DATA SET : 22.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.68 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 11.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.93800 REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 3R24 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG 5000 ME, 5% TASCIMATE, PH7.0, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,-Y,-Z+1/2 REMARK 290 4555 -X+1/2,-Y,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 33.85650 REMARK 290 SMTRY2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 60.06550 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 33.85650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 60.06550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 140 REMARK 465 THR A 287 REMARK 465 LEU A 288 REMARK 465 VAL A 294 REMARK 465 LEU A 295 REMARK 465 VAL A 296 REMARK 465 ASN A 297 REMARK 465 THR A 298 REMARK 465 TYR A 299 REMARK 465 ARG A 300 REMARK 465 LYS A 301 REMARK 465 LEU A 302 REMARK 465 ARG A 303 REMARK 465 ALA B 1 REMARK 465 GLY B 2 REMARK 465 SER B 3 REMARK 465 ASN B 4 REMARK 465 THR B 5 REMARK 465 GLU B 6 REMARK 465 PHE B 7 REMARK 465 ALA B 8 REMARK 465 SER B 9 REMARK 465 ASN B 10 REMARK 465 ASP B 131 REMARK 465 SER B 132 REMARK 465 LEU B 133 REMARK 465 ARG B 134 REMARK 465 GLN B 135 REMARK 465 ALA B 136 REMARK 465 ALA B 137 REMARK 465 LEU B 138 REMARK 465 PRO B 139 REMARK 465 GLN B 140 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 24 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 31 CG CD CE NZ REMARK 470 ARG A 38 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 263 CG CD CE NZ REMARK 470 GLU A 264 CG CD OE1 OE2 REMARK 470 ASP A 286 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 685 O HOH A 695 1.94 REMARK 500 O HOH A 623 O HOH A 649 1.96 REMARK 500 O HOH A 595 O HOH A 671 2.00 REMARK 500 O HOH A 649 O HOH A 690 2.02 REMARK 500 O HOH A 664 O HOH A 695 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 31 -1.20 66.23 REMARK 500 PRO A 37 -23.07 -35.41 REMARK 500 ARG A 38 -165.92 -164.06 REMARK 500 ALA A 147 -87.16 -89.28 REMARK 500 LEU A 148 -138.17 53.22 REMARK 500 ASN A 210 92.52 68.17 REMARK 500 ASN A 268 -165.80 -109.84 REMARK 500 ASP B 106 73.69 -150.57 REMARK 500 TYR B 126 50.75 -142.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 706 DISTANCE = 6.37 ANGSTROMS REMARK 525 HOH A 707 DISTANCE = 6.41 ANGSTROMS REMARK 525 HOH A 708 DISTANCE = 10.98 ANGSTROMS REMARK 525 HOH B 348 DISTANCE = 6.21 ANGSTROMS REMARK 525 HOH B 349 DISTANCE = 8.60 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 74 SG REMARK 620 2 CYS B 77 SG 114.6 REMARK 620 3 HIS B 83 NE2 106.5 111.6 REMARK 620 4 CYS B 90 SG 107.1 114.7 101.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 117 SG REMARK 620 2 CYS B 120 SG 106.9 REMARK 620 3 CYS B 128 SG 101.3 107.6 REMARK 620 4 CYS B 130 SG 113.0 115.7 111.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAM A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GTA A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 202 DBREF 5YNM A 1 303 UNP K0BWD0 K0BWD0_9BETC 6776 7078 DBREF 5YNM B 1 140 UNP K4LC41 K4LC41_9BETC 4238 4377 SEQRES 1 A 303 ALA SER ALA ASP TRP LYS PRO GLY HIS ALA MET PRO SER SEQRES 2 A 303 LEU PHE LYS VAL GLN ASN VAL ASN LEU GLU ARG CYS GLU SEQRES 3 A 303 LEU ALA ASN TYR LYS GLN SER ILE PRO MET PRO ARG GLY SEQRES 4 A 303 VAL HIS MET ASN ILE ALA LYS TYR MET GLN LEU CYS GLN SEQRES 5 A 303 TYR LEU ASN THR CYS THR LEU ALA VAL PRO ALA ASN MET SEQRES 6 A 303 ARG VAL ILE HIS PHE GLY ALA GLY SER ASP LYS GLY ILE SEQRES 7 A 303 ALA PRO GLY THR SER VAL LEU ARG GLN TRP LEU PRO THR SEQRES 8 A 303 ASP ALA ILE ILE ILE ASP ASN ASP LEU ASN GLU PHE VAL SEQRES 9 A 303 SER ASP ALA ASP ILE THR LEU PHE GLY ASP CYS VAL THR SEQRES 10 A 303 VAL ARG VAL GLY GLN GLN VAL ASP LEU VAL ILE SER ASP SEQRES 11 A 303 MET TYR ASP PRO THR THR LYS ASN VAL THR GLY SER ASN SEQRES 12 A 303 GLU SER LYS ALA LEU PHE PHE THR TYR LEU CYS ASN LEU SEQRES 13 A 303 ILE ASN ASN ASN LEU ALA LEU GLY GLY SER VAL ALA ILE SEQRES 14 A 303 LYS ILE THR GLU HIS SER TRP SER VAL GLU LEU TYR GLU SEQRES 15 A 303 LEU MET GLY LYS PHE ALA TRP TRP THR VAL PHE CYS THR SEQRES 16 A 303 ASN ALA ASN ALA SER SER SER GLU GLY PHE LEU LEU GLY SEQRES 17 A 303 ILE ASN TYR LEU GLY THR ILE LYS GLU ASN ILE ASP GLY SEQRES 18 A 303 GLY ALA MET HIS ALA ASN TYR ILE PHE TRP ARG ASN SER SEQRES 19 A 303 THR PRO MET ASN LEU SER THR TYR SER LEU PHE ASP LEU SEQRES 20 A 303 SER LYS PHE GLN LEU LYS LEU LYS GLY THR PRO VAL LEU SEQRES 21 A 303 GLN LEU LYS GLU SER GLN ILE ASN GLU LEU VAL ILE SER SEQRES 22 A 303 LEU LEU SER GLN GLY LYS LEU LEU ILE ARG ASP ASN ASP SEQRES 23 A 303 THR LEU SER VAL SER THR ASP VAL LEU VAL ASN THR TYR SEQRES 24 A 303 ARG LYS LEU ARG SEQRES 1 B 140 ALA GLY SER ASN THR GLU PHE ALA SER ASN SER SER VAL SEQRES 2 B 140 LEU SER LEU VAL ASN PHE THR VAL ASP PRO GLN LYS ALA SEQRES 3 B 140 TYR LEU ASP PHE VAL ASN ALA GLY GLY ALA PRO LEU THR SEQRES 4 B 140 ASN CYS VAL LYS MET LEU THR PRO LYS THR GLY THR GLY SEQRES 5 B 140 ILE ALA ILE SER VAL LYS PRO GLU SER THR ALA ASP GLN SEQRES 6 B 140 GLU THR TYR GLY GLY ALA SER VAL CYS LEU TYR CYS ARG SEQRES 7 B 140 ALA HIS ILE GLU HIS PRO ASP VAL SER GLY VAL CYS LYS SEQRES 8 B 140 TYR LYS GLY LYS PHE VAL GLN ILE PRO ALA GLN CYS VAL SEQRES 9 B 140 ARG ASP PRO VAL GLY PHE CYS LEU SER ASN THR PRO CYS SEQRES 10 B 140 ASN VAL CYS GLN TYR TRP ILE GLY TYR GLY CYS ASN CYS SEQRES 11 B 140 ASP SER LEU ARG GLN ALA ALA LEU PRO GLN HET SAM A 401 27 HET GTA A 402 51 HET ZN B 201 1 HET ZN B 202 1 HETNAM SAM S-ADENOSYLMETHIONINE HETNAM GTA P1-7-METHYLGUANOSINE-P3-ADENOSINE-5',5'-TRIPHOSPHATE HETNAM ZN ZINC ION HETSYN GTA 7-METHYL-GPPPA FORMUL 3 SAM C15 H22 N6 O5 S FORMUL 4 GTA C21 H30 N10 O17 P3 1+ FORMUL 5 ZN 2(ZN 2+) FORMUL 7 HOH *257(H2 O) HELIX 1 AA1 ALA A 1 LYS A 6 5 6 HELIX 2 AA2 PRO A 12 VAL A 17 1 6 HELIX 3 AA3 HIS A 41 ASN A 55 1 15 HELIX 4 AA4 ALA A 79 LEU A 89 1 11 HELIX 5 AA5 ASP A 114 VAL A 116 5 3 HELIX 6 AA6 ASP A 133 ASN A 138 5 6 HELIX 7 AA7 PHE A 149 ASN A 160 1 12 HELIX 8 AA8 SER A 177 MET A 184 1 8 HELIX 9 AA9 ALA A 197 ALA A 199 5 3 HELIX 10 AB1 ASP A 220 THR A 235 1 16 HELIX 11 AB2 THR A 241 PHE A 245 5 5 HELIX 12 AB3 LYS A 263 ILE A 267 5 5 HELIX 13 AB4 ASN A 268 GLN A 277 1 10 HELIX 14 AB5 SER B 12 VAL B 17 1 6 HELIX 15 AB6 ASP B 22 ALA B 33 1 12 HELIX 16 AB7 ALA B 71 VAL B 73 5 3 HELIX 17 AB8 CYS B 74 ALA B 79 1 6 HELIX 18 AB9 GLN B 102 VAL B 104 5 3 HELIX 19 AC1 ASP B 106 ASN B 114 1 9 SHEET 1 AA1 8 GLY A 8 ALA A 10 0 SHEET 2 AA1 8 PHE A 187 THR A 195 -1 O CYS A 194 N HIS A 9 SHEET 3 AA1 8 GLY A 204 TYR A 211 -1 O ILE A 209 N TRP A 189 SHEET 4 AA1 8 LEU A 161 ILE A 171 -1 N ILE A 171 O GLY A 204 SHEET 5 AA1 8 VAL A 124 SER A 129 1 N VAL A 124 O ALA A 162 SHEET 6 AA1 8 ARG A 66 PHE A 70 1 N ILE A 68 O ILE A 128 SHEET 7 AA1 8 ILE A 94 ASP A 99 1 O ILE A 96 N HIS A 69 SHEET 8 AA1 8 ILE A 109 PHE A 112 1 O ILE A 109 N ASP A 97 SHEET 1 AA2 2 VAL A 118 VAL A 120 0 SHEET 2 AA2 2 VAL A 290 THR A 292 -1 O SER A 291 N ARG A 119 SHEET 1 AA3 2 VAL A 259 LEU A 260 0 SHEET 2 AA3 2 LEU A 281 ILE A 282 1 O LEU A 281 N LEU A 260 SHEET 1 AA4 3 ILE B 55 SER B 56 0 SHEET 2 AA4 3 PHE B 96 PRO B 100 -1 O PHE B 96 N SER B 56 SHEET 3 AA4 3 GLN B 65 GLY B 69 -1 N GLU B 66 O ILE B 99 LINK SG CYS B 74 ZN ZN B 201 1555 1555 2.27 LINK SG CYS B 77 ZN ZN B 201 1555 1555 2.28 LINK NE2 HIS B 83 ZN ZN B 201 1555 1555 1.99 LINK SG CYS B 90 ZN ZN B 201 1555 1555 2.40 LINK SG CYS B 117 ZN ZN B 202 1555 1555 2.32 LINK SG CYS B 120 ZN ZN B 202 1555 1555 2.26 LINK SG CYS B 128 ZN ZN B 202 1555 1555 2.33 LINK SG CYS B 130 ZN ZN B 202 1555 1555 2.30 SITE 1 AC1 19 ASN A 43 TYR A 47 GLY A 71 ALA A 72 SITE 2 AC1 19 GLY A 73 PRO A 80 GLY A 81 ASN A 98 SITE 3 AC1 19 ASP A 99 LEU A 100 ASN A 101 ASP A 114 SITE 4 AC1 19 CYS A 115 ASP A 130 MET A 131 TYR A 132 SITE 5 AC1 19 GTA A 402 HOH A 512 HOH A 561 SITE 1 AC2 18 CYS A 25 GLU A 26 LEU A 27 TYR A 30 SITE 2 AC2 18 LYS A 46 TYR A 132 LYS A 137 LYS A 170 SITE 3 AC2 18 THR A 172 GLU A 173 HIS A 174 SER A 201 SITE 4 AC2 18 SER A 202 GLU A 203 SAM A 401 HOH A 508 SITE 5 AC2 18 HOH A 549 HOH A 554 SITE 1 AC3 4 CYS B 74 CYS B 77 HIS B 83 CYS B 90 SITE 1 AC4 4 CYS B 117 CYS B 120 CYS B 128 CYS B 130 CRYST1 67.713 70.024 120.131 90.00 90.00 90.00 P 21 2 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014768 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014281 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008324 0.00000