HEADER VIRAL PROTEIN/INHIBITOR 27-OCT-17 5YOF TITLE CRYSTAL STRUCTURE OF ZIKA VIRUS NS3 PROTEASE IN COMPLEX WITH A TITLE 2 DIPEPTIDE INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: NS2B COFACTOR; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: NS3 PROTEASE; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ZIKA VIRUS; SOURCE 3 ORGANISM_TAXID: 64320; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_PLASMID: PET-DUET; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: ZIKA VIRUS; SOURCE 9 ORGANISM_TAXID: 64320; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SERINE PROTEASE, VIRAL NON-STRUCTURAL PROTEIN, ZIKA VIRUS PROTEASE, KEYWDS 2 VIRAL PROTEIN-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR W.W.PHOO,Z.Z.ZHANG REVDAT 4 22-NOV-23 5YOF 1 REMARK REVDAT 3 25-APR-18 5YOF 1 JRNL REVDAT 2 04-APR-18 5YOF 1 JRNL REVDAT 1 21-MAR-18 5YOF 0 JRNL AUTH Y.LI,Z.ZHANG,W.W.PHOO,Y.R.LOH,R.LI,H.Y.YANG,A.E.JANSSON, JRNL AUTH 2 J.HILL,T.H.KELLER,K.NACRO,D.LUO,C.KANG JRNL TITL STRUCTURAL INSIGHTS INTO THE INHIBITION OF ZIKA VIRUS JRNL TITL 2 NS2B-NS3 PROTEASE BY A SMALL-MOLECULE INHIBITOR JRNL REF STRUCTURE V. 26 555 2018 JRNL REFN ISSN 1878-4186 JRNL PMID 29526431 JRNL DOI 10.1016/J.STR.2018.02.005 REMARK 2 REMARK 2 RESOLUTION. 1.51 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.51 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.92 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 32908 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 1658 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 3.4565 - 2.7437 1.00 2686 140 0.1914 0.1873 REMARK 3 2 2.7437 - 2.3969 1.00 2634 145 0.2031 0.2000 REMARK 3 3 2.3969 - 2.1777 1.00 2610 136 0.1875 0.2142 REMARK 3 4 2.1777 - 2.0216 1.00 2626 114 0.1932 0.2061 REMARK 3 5 2.0216 - 1.9025 1.00 2600 119 0.1932 0.2143 REMARK 3 6 1.9025 - 1.8072 1.00 2546 143 0.1962 0.2156 REMARK 3 7 1.8072 - 1.7285 1.00 2569 135 0.2012 0.2349 REMARK 3 8 1.7285 - 1.6620 0.99 2532 138 0.2299 0.2656 REMARK 3 9 1.6620 - 1.6046 0.99 2533 134 0.2509 0.2563 REMARK 3 10 1.6046 - 1.5544 0.99 2514 154 0.2954 0.2648 REMARK 3 11 1.5544 - 1.5100 0.99 2502 148 0.3414 0.3671 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.010 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 1506 REMARK 3 ANGLE : 0.796 2050 REMARK 3 CHIRALITY : 0.058 229 REMARK 3 PLANARITY : 0.005 265 REMARK 3 DIHEDRAL : 14.009 885 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 50 THROUGH 59 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.4529 9.9163 -17.7560 REMARK 3 T TENSOR REMARK 3 T11: 0.4701 T22: 0.2887 REMARK 3 T33: 0.4036 T12: 0.0258 REMARK 3 T13: 0.0415 T23: -0.0800 REMARK 3 L TENSOR REMARK 3 L11: 3.2300 L22: 5.9384 REMARK 3 L33: 4.9458 L12: 1.1260 REMARK 3 L13: -0.8995 L23: -2.5838 REMARK 3 S TENSOR REMARK 3 S11: 0.0085 S12: 0.1940 S13: -0.7602 REMARK 3 S21: -0.1835 S22: -0.2054 S23: -0.4805 REMARK 3 S31: 0.7551 S32: 0.3706 S33: 0.1714 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 60 THROUGH 88 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.3157 26.6585 -18.9775 REMARK 3 T TENSOR REMARK 3 T11: 0.3977 T22: 0.5291 REMARK 3 T33: 0.3681 T12: 0.0257 REMARK 3 T13: -0.0720 T23: 0.0336 REMARK 3 L TENSOR REMARK 3 L11: 2.6778 L22: 2.7710 REMARK 3 L33: 2.5442 L12: 0.4055 REMARK 3 L13: 0.5138 L23: -0.7188 REMARK 3 S TENSOR REMARK 3 S11: 0.0319 S12: 0.3403 S13: 0.1359 REMARK 3 S21: -0.5230 S22: 0.1452 S23: 0.3989 REMARK 3 S31: 0.1661 S32: -0.5662 S33: -0.1492 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 16 THROUGH 42 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.0119 9.1993 -16.5087 REMARK 3 T TENSOR REMARK 3 T11: 0.4216 T22: 0.2329 REMARK 3 T33: 0.3116 T12: -0.0125 REMARK 3 T13: 0.0385 T23: -0.0492 REMARK 3 L TENSOR REMARK 3 L11: 3.5700 L22: 3.9691 REMARK 3 L33: 2.3776 L12: 0.8956 REMARK 3 L13: 0.8590 L23: 0.8729 REMARK 3 S TENSOR REMARK 3 S11: 0.0182 S12: 0.0233 S13: -0.5537 REMARK 3 S21: -0.0359 S22: -0.0466 S23: -0.4418 REMARK 3 S31: 0.5853 S32: 0.3030 S33: -0.0514 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 43 THROUGH 79 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.6556 15.7449 -6.9609 REMARK 3 T TENSOR REMARK 3 T11: 0.2693 T22: 0.1893 REMARK 3 T33: 0.2633 T12: -0.0182 REMARK 3 T13: -0.0142 T23: 0.0068 REMARK 3 L TENSOR REMARK 3 L11: 3.5040 L22: 1.6090 REMARK 3 L33: 4.3023 L12: 0.4648 REMARK 3 L13: 0.4743 L23: 0.5076 REMARK 3 S TENSOR REMARK 3 S11: 0.0317 S12: -0.1486 S13: -0.1870 REMARK 3 S21: 0.1182 S22: 0.0275 S23: -0.1121 REMARK 3 S31: 0.5121 S32: -0.0687 S33: -0.0437 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 80 THROUGH 106 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.0515 24.0376 -20.5687 REMARK 3 T TENSOR REMARK 3 T11: 0.3136 T22: 0.2589 REMARK 3 T33: 0.2339 T12: -0.0162 REMARK 3 T13: 0.0272 T23: 0.0350 REMARK 3 L TENSOR REMARK 3 L11: 2.8077 L22: 2.3884 REMARK 3 L33: 3.1446 L12: -1.2792 REMARK 3 L13: 0.0186 L23: -0.8550 REMARK 3 S TENSOR REMARK 3 S11: 0.1102 S12: 0.3126 S13: 0.2655 REMARK 3 S21: -0.4545 S22: -0.0899 S23: -0.1977 REMARK 3 S31: -0.3028 S32: -0.1149 S33: -0.0171 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 107 THROUGH 171 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.0209 25.1964 -19.1906 REMARK 3 T TENSOR REMARK 3 T11: 0.2862 T22: 0.3419 REMARK 3 T33: 0.2170 T12: -0.0153 REMARK 3 T13: -0.0512 T23: 0.0290 REMARK 3 L TENSOR REMARK 3 L11: 4.3793 L22: 5.1400 REMARK 3 L33: 3.6188 L12: -0.5495 REMARK 3 L13: -0.6319 L23: -0.8985 REMARK 3 S TENSOR REMARK 3 S11: 0.0887 S12: 0.3573 S13: 0.0864 REMARK 3 S21: -0.3552 S22: 0.0572 S23: 0.2402 REMARK 3 S31: -0.0472 S32: -0.6499 S33: -0.0771 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5YOF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 31-OCT-17. REMARK 100 THE DEPOSITION ID IS D_1300005615. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-MAR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4-5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0004 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS, POINTLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33148 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.510 REMARK 200 RESOLUTION RANGE LOW (A) : 45.920 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 14.10 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.51 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 12.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5GPI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM SULFATE, 0.1M SODIUM REMARK 280 ACETATE TRIHYDRATE PH 4.6, 25% PEG4000, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+1/4 REMARK 290 8555 -Y,-X,-Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 107.80750 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 161.71125 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 53.90375 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 107.80750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 53.90375 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 161.71125 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 348 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 369 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 372 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 44 REMARK 465 THR A 45 REMARK 465 GLY A 46 REMARK 465 LYS A 47 REMARK 465 SER A 48 REMARK 465 VAL A 49 REMARK 465 GLU A 89 REMARK 465 ASP A 90 REMARK 465 GLY A 91 REMARK 465 PRO A 92 REMARK 465 PRO A 93 REMARK 465 MET A 94 REMARK 465 ARG A 95 REMARK 465 GLU A 96 REMARK 465 GLY B 0 REMARK 465 SER B 1 REMARK 465 GLY B 2 REMARK 465 ALA B 3 REMARK 465 LEU B 4 REMARK 465 TRP B 5 REMARK 465 ASP B 6 REMARK 465 VAL B 7 REMARK 465 PRO B 8 REMARK 465 ALA B 9 REMARK 465 PRO B 10 REMARK 465 LYS B 11 REMARK 465 GLU B 12 REMARK 465 VAL B 13 REMARK 465 LYS B 14 REMARK 465 LYS B 15 REMARK 465 GLU B 172 REMARK 465 GLU B 173 REMARK 465 THR B 174 REMARK 465 PRO B 175 REMARK 465 VAL B 176 REMARK 465 GLU B 177 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 63 CG CD CE NZ REMARK 470 ASP A 64 CG OD1 OD2 REMARK 470 GLU A 66 CG CD OE1 OE2 REMARK 470 GLU A 88 CG CD OE1 OE2 REMARK 470 ARG B 29 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 62 CG CD OE1 OE2 REMARK 470 GLU B 104 CG CD OE1 OE2 REMARK 470 LYS B 142 CG CD CE NZ REMARK 470 LYS B 169 CG CD CE NZ REMARK 470 GLU B 171 CG CD OE1 OE2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLY B 159 N REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 302 O HOH B 342 1.97 REMARK 500 OD2 ASP A 79 O HOH A 101 2.05 REMARK 500 NE ARG B 105 O HOH B 301 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 64 53.04 -118.47 REMARK 500 ASN A 70 -169.39 -100.73 REMARK 500 CYS B 80 -5.93 77.12 REMARK 500 LEU B 92 -38.11 -137.39 REMARK 500 ASN B 158 14.75 -69.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 7HS B 201 DBREF 5YOF A 44 96 PDB 5YOF 5YOF 44 96 DBREF 5YOF B 0 177 PDB 5YOF 5YOF 0 177 SEQRES 1 A 53 MET THR GLY LYS SER VAL ASP MET TYR ILE GLU ARG ALA SEQRES 2 A 53 GLY ASP ILE THR TRP GLU LYS ASP ALA GLU VAL THR GLY SEQRES 3 A 53 ASN SER PRO ARG LEU ASP VAL ALA LEU ASP GLU SER GLY SEQRES 4 A 53 ASP PHE SER LEU VAL GLU GLU ASP GLY PRO PRO MET ARG SEQRES 5 A 53 GLU SEQRES 1 B 178 GLY SER GLY ALA LEU TRP ASP VAL PRO ALA PRO LYS GLU SEQRES 2 B 178 VAL LYS LYS GLY GLU THR THR ASP GLY VAL TYR ARG VAL SEQRES 3 B 178 MET THR ARG ARG LEU LEU GLY SER THR GLN VAL GLY VAL SEQRES 4 B 178 GLY VAL MET GLN GLU GLY VAL PHE HIS THR MET TRP HIS SEQRES 5 B 178 VAL THR LYS GLY ALA ALA LEU ARG SER GLY GLU GLY ARG SEQRES 6 B 178 LEU ASP PRO TYR TRP GLY ASP VAL LYS GLN ASP LEU VAL SEQRES 7 B 178 SER TYR CYS GLY PRO TRP LYS LEU ASP ALA ALA TRP ASP SEQRES 8 B 178 GLY LEU SER GLU VAL GLN LEU LEU ALA VAL PRO PRO GLY SEQRES 9 B 178 GLU ARG ALA LYS ASN ILE GLN THR LEU PRO GLY ILE PHE SEQRES 10 B 178 LYS THR LYS ASP GLY ASP ILE GLY ALA VAL ALA LEU ASP SEQRES 11 B 178 TYR PRO ALA GLY THR SER GLY SER PRO ILE LEU ASP LYS SEQRES 12 B 178 SER GLY ARG VAL ILE GLY LEU TYR GLY ASN GLY VAL VAL SEQRES 13 B 178 ILE LYS ASN GLY SER TYR VAL SER ALA ILE THR GLN GLY SEQRES 14 B 178 LYS ARG GLU GLU GLU THR PRO VAL GLU HET 7HS B 201 23 HETNAM 7HS (S)-2-ACETAMIDO-6-AMINO-N-((S)-5-GUANIDINO-1-OXOPENTAN- HETNAM 2 7HS 2-YL)HEXANAMIDE FORMUL 3 7HS C14 H28 N6 O3 FORMUL 4 HOH *98(H2 O) HELIX 1 AA1 MET B 49 LYS B 54 1 6 HELIX 2 AA2 PRO B 131 SER B 135 5 5 SHEET 1 AA1 8 GLY B 63 LEU B 65 0 SHEET 2 AA1 8 LEU B 58 SER B 60 -1 N LEU B 58 O LEU B 65 SHEET 3 AA1 8 MET A 51 GLY A 57 1 N ILE A 53 O ARG B 59 SHEET 4 AA1 8 GLY B 21 THR B 27 -1 O MET B 26 N TYR A 52 SHEET 5 AA1 8 THR B 34 GLN B 42 -1 O MET B 41 N GLY B 21 SHEET 6 AA1 8 VAL B 45 THR B 48 -1 O HIS B 47 N VAL B 40 SHEET 7 AA1 8 LEU B 76 TYR B 79 -1 O VAL B 77 N THR B 48 SHEET 8 AA1 8 PRO B 67 ASP B 71 -1 N TYR B 68 O SER B 78 SHEET 1 AA2 5 GLU A 66 VAL A 67 0 SHEET 2 AA2 5 LYS B 107 THR B 111 1 O GLN B 110 N GLU A 66 SHEET 3 AA2 5 VAL B 95 ALA B 99 -1 N VAL B 95 O THR B 111 SHEET 4 AA2 5 PRO B 138 LEU B 140 -1 O LEU B 140 N GLN B 96 SHEET 5 AA2 5 VAL B 146 LEU B 149 -1 O GLY B 148 N ILE B 139 SHEET 1 AA3 6 PHE A 84 LEU A 86 0 SHEET 2 AA3 6 ARG A 73 LEU A 78 -1 N ALA A 77 O SER A 85 SHEET 3 AA3 6 GLY B 114 THR B 118 1 O LYS B 117 N LEU A 74 SHEET 4 AA3 6 GLY B 121 VAL B 126 -1 O ILE B 123 N PHE B 116 SHEET 5 AA3 6 TYR B 161 ALA B 164 -1 O SER B 163 N VAL B 126 SHEET 6 AA3 6 GLY B 153 VAL B 155 -1 N VAL B 154 O VAL B 162 LINK OG SER B 135 CAO 7HS B 201 1555 1555 1.45 SITE 1 AC1 15 SER A 81 GLY A 82 ASP A 83 HIS B 51 SITE 2 AC1 15 ASP B 75 ASP B 129 TYR B 130 ALA B 132 SITE 3 AC1 15 SER B 135 GLY B 151 ASN B 152 GLY B 153 SITE 4 AC1 15 TYR B 161 HOH B 305 HOH B 323 CRYST1 42.919 42.919 215.615 90.00 90.00 90.00 P 43 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023300 0.000000 0.000000 0.00000 SCALE2 0.000000 0.023300 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004638 0.00000