data_5YPF # _entry.id 5YPF # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5YPF pdb_00005ypf 10.2210/pdb5ypf/pdb WWPDB D_1300005678 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2018-08-29 2 'Structure model' 1 1 2018-10-03 3 'Structure model' 1 2 2024-03-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Structure summary' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' struct 2 3 'Structure model' chem_comp_atom 3 3 'Structure model' chem_comp_bond 4 3 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_struct.title' 2 3 'Structure model' '_database_2.pdbx_DOI' 3 3 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5YPF _pdbx_database_status.recvd_initial_deposition_date 2017-11-01 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Kwon, D.H.' 1 0000-0002-3214-3394 'Kim, L.' 2 ? 'Song, H.K.' 3 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nat Commun' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2041-1723 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 9 _citation.language ? _citation.page_first 3291 _citation.page_last 3291 _citation.title 'Insights into degradation mechanism of N-end rule substrates by p62/SQSTM1 autophagy adapter.' _citation.year 2018 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41467-018-05825-x _citation.pdbx_database_id_PubMed 30120248 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kwon, D.H.' 1 0000-0002-3214-3394 primary 'Park, O.H.' 2 ? primary 'Kim, L.' 3 0000-0002-1266-7828 primary 'Jung, Y.O.' 4 0000-0001-6410-4165 primary 'Park, Y.' 5 ? primary 'Jeong, H.' 6 ? primary 'Hyun, J.' 7 ? primary 'Kim, Y.K.' 8 0000-0003-1303-072X primary 'Song, H.K.' 9 0000-0001-5684-4059 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man '78 kDa glucose-regulated protein,Sequestosome-1' 6542.330 4 ? ? ? ? 2 non-polymer syn 'ZINC ION' 65.409 8 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name ;GRP-78,Endoplasmic reticulum lumenal Ca(2+)-binding protein grp78,Heat shock 70 kDa protein 5,Immunoglobulin heavy chain-binding protein,BiP,EBI3-associated protein of 60 kDa,p60,Phosphotyrosine-independent ligand for the Lck SH2 domain of 62 kDa,Ubiquitin-binding protein p62 ; # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code WEEEDVICDGCNGPVVGTRYKCSVCPDYDLCSVCEGKGLHRGHTKLAFPSPFGHLSEGFS _entity_poly.pdbx_seq_one_letter_code_can WEEEDVICDGCNGPVVGTRYKCSVCPDYDLCSVCEGKGLHRGHTKLAFPSPFGHLSEGFS _entity_poly.pdbx_strand_id A,B,C,D _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name 'ZINC ION' _pdbx_entity_nonpoly.comp_id ZN # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 TRP n 1 2 GLU n 1 3 GLU n 1 4 GLU n 1 5 ASP n 1 6 VAL n 1 7 ILE n 1 8 CYS n 1 9 ASP n 1 10 GLY n 1 11 CYS n 1 12 ASN n 1 13 GLY n 1 14 PRO n 1 15 VAL n 1 16 VAL n 1 17 GLY n 1 18 THR n 1 19 ARG n 1 20 TYR n 1 21 LYS n 1 22 CYS n 1 23 SER n 1 24 VAL n 1 25 CYS n 1 26 PRO n 1 27 ASP n 1 28 TYR n 1 29 ASP n 1 30 LEU n 1 31 CYS n 1 32 SER n 1 33 VAL n 1 34 CYS n 1 35 GLU n 1 36 GLY n 1 37 LYS n 1 38 GLY n 1 39 LEU n 1 40 HIS n 1 41 ARG n 1 42 GLY n 1 43 HIS n 1 44 THR n 1 45 LYS n 1 46 LEU n 1 47 ALA n 1 48 PHE n 1 49 PRO n 1 50 SER n 1 51 PRO n 1 52 PHE n 1 53 GLY n 1 54 HIS n 1 55 LEU n 1 56 SER n 1 57 GLU n 1 58 GLY n 1 59 PHE n 1 60 SER n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample 'Biological sequence' 1 5 Human ? 'HSPA5, GRP78' ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Escherichia coli BL21(DE3)' 469008 ? ? ? ? ? ? 'BL21(DE3)' ? ? ? ? ? ? ? ? ? ? ? ? ? ? 1 2 sample 'Biological sequence' 6 60 Human ? 'SQSTM1, ORCA, OSIL' ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Escherichia coli BL21(DE3)' 469008 ? ? ? ? ? ? 'BL21(DE3)' ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 TRP 1 -3 -3 TRP TRP A . n A 1 2 GLU 2 -2 -2 GLU GLU A . n A 1 3 GLU 3 -1 -1 GLU GLU A . n A 1 4 GLU 4 0 0 GLU GLU A . n A 1 5 ASP 5 1 1 ASP ASP A . n A 1 6 VAL 6 2 2 VAL VAL A . n A 1 7 ILE 7 3 3 ILE ILE A . n A 1 8 CYS 8 4 4 CYS CYS A . n A 1 9 ASP 9 5 5 ASP ASP A . n A 1 10 GLY 10 6 6 GLY GLY A . n A 1 11 CYS 11 7 7 CYS CYS A . n A 1 12 ASN 12 8 8 ASN ASN A . n A 1 13 GLY 13 9 9 GLY GLY A . n A 1 14 PRO 14 10 10 PRO PRO A . n A 1 15 VAL 15 11 11 VAL VAL A . n A 1 16 VAL 16 12 12 VAL VAL A . n A 1 17 GLY 17 13 13 GLY GLY A . n A 1 18 THR 18 14 14 THR THR A . n A 1 19 ARG 19 15 15 ARG ARG A . n A 1 20 TYR 20 16 16 TYR TYR A . n A 1 21 LYS 21 17 17 LYS LYS A . n A 1 22 CYS 22 18 18 CYS CYS A . n A 1 23 SER 23 19 19 SER SER A . n A 1 24 VAL 24 20 20 VAL VAL A . n A 1 25 CYS 25 21 21 CYS CYS A . n A 1 26 PRO 26 22 22 PRO PRO A . n A 1 27 ASP 27 23 23 ASP ASP A . n A 1 28 TYR 28 24 24 TYR TYR A . n A 1 29 ASP 29 25 25 ASP ASP A . n A 1 30 LEU 30 26 26 LEU LEU A . n A 1 31 CYS 31 27 27 CYS CYS A . n A 1 32 SER 32 28 28 SER SER A . n A 1 33 VAL 33 29 29 VAL VAL A . n A 1 34 CYS 34 30 30 CYS CYS A . n A 1 35 GLU 35 31 31 GLU GLU A . n A 1 36 GLY 36 32 32 GLY GLY A . n A 1 37 LYS 37 33 33 LYS LYS A . n A 1 38 GLY 38 34 34 GLY GLY A . n A 1 39 LEU 39 35 35 LEU LEU A . n A 1 40 HIS 40 36 36 HIS HIS A . n A 1 41 ARG 41 37 37 ARG ARG A . n A 1 42 GLY 42 38 38 GLY GLY A . n A 1 43 HIS 43 39 39 HIS HIS A . n A 1 44 THR 44 40 40 THR THR A . n A 1 45 LYS 45 41 41 LYS LYS A . n A 1 46 LEU 46 42 42 LEU LEU A . n A 1 47 ALA 47 43 43 ALA ALA A . n A 1 48 PHE 48 44 44 PHE PHE A . n A 1 49 PRO 49 45 45 PRO PRO A . n A 1 50 SER 50 46 ? ? ? A . n A 1 51 PRO 51 47 ? ? ? A . n A 1 52 PHE 52 48 ? ? ? A . n A 1 53 GLY 53 49 ? ? ? A . n A 1 54 HIS 54 50 ? ? ? A . n A 1 55 LEU 55 51 ? ? ? A . n A 1 56 SER 56 52 ? ? ? A . n A 1 57 GLU 57 53 ? ? ? A . n A 1 58 GLY 58 54 ? ? ? A . n A 1 59 PHE 59 55 ? ? ? A . n A 1 60 SER 60 56 ? ? ? A . n B 1 1 TRP 1 -3 -3 TRP TRP B . n B 1 2 GLU 2 -2 -2 GLU GLU B . n B 1 3 GLU 3 -1 -1 GLU GLU B . n B 1 4 GLU 4 0 0 GLU GLU B . n B 1 5 ASP 5 1 1 ASP ASP B . n B 1 6 VAL 6 2 2 VAL VAL B . n B 1 7 ILE 7 3 3 ILE ILE B . n B 1 8 CYS 8 4 4 CYS CYS B . n B 1 9 ASP 9 5 5 ASP ASP B . n B 1 10 GLY 10 6 6 GLY GLY B . n B 1 11 CYS 11 7 7 CYS CYS B . n B 1 12 ASN 12 8 8 ASN ASN B . n B 1 13 GLY 13 9 9 GLY GLY B . n B 1 14 PRO 14 10 10 PRO PRO B . n B 1 15 VAL 15 11 11 VAL VAL B . n B 1 16 VAL 16 12 12 VAL VAL B . n B 1 17 GLY 17 13 13 GLY GLY B . n B 1 18 THR 18 14 14 THR THR B . n B 1 19 ARG 19 15 15 ARG ARG B . n B 1 20 TYR 20 16 16 TYR TYR B . n B 1 21 LYS 21 17 17 LYS LYS B . n B 1 22 CYS 22 18 18 CYS CYS B . n B 1 23 SER 23 19 19 SER SER B . n B 1 24 VAL 24 20 20 VAL VAL B . n B 1 25 CYS 25 21 21 CYS CYS B . n B 1 26 PRO 26 22 22 PRO PRO B . n B 1 27 ASP 27 23 23 ASP ASP B . n B 1 28 TYR 28 24 24 TYR TYR B . n B 1 29 ASP 29 25 25 ASP ASP B . n B 1 30 LEU 30 26 26 LEU LEU B . n B 1 31 CYS 31 27 27 CYS CYS B . n B 1 32 SER 32 28 28 SER SER B . n B 1 33 VAL 33 29 29 VAL VAL B . n B 1 34 CYS 34 30 30 CYS CYS B . n B 1 35 GLU 35 31 31 GLU GLU B . n B 1 36 GLY 36 32 32 GLY GLY B . n B 1 37 LYS 37 33 33 LYS LYS B . n B 1 38 GLY 38 34 34 GLY GLY B . n B 1 39 LEU 39 35 35 LEU LEU B . n B 1 40 HIS 40 36 36 HIS HIS B . n B 1 41 ARG 41 37 37 ARG ARG B . n B 1 42 GLY 42 38 38 GLY GLY B . n B 1 43 HIS 43 39 39 HIS HIS B . n B 1 44 THR 44 40 40 THR THR B . n B 1 45 LYS 45 41 41 LYS LYS B . n B 1 46 LEU 46 42 42 LEU LEU B . n B 1 47 ALA 47 43 43 ALA ALA B . n B 1 48 PHE 48 44 44 PHE PHE B . n B 1 49 PRO 49 45 45 PRO PRO B . n B 1 50 SER 50 46 ? ? ? B . n B 1 51 PRO 51 47 ? ? ? B . n B 1 52 PHE 52 48 ? ? ? B . n B 1 53 GLY 53 49 ? ? ? B . n B 1 54 HIS 54 50 ? ? ? B . n B 1 55 LEU 55 51 ? ? ? B . n B 1 56 SER 56 52 ? ? ? B . n B 1 57 GLU 57 53 ? ? ? B . n B 1 58 GLY 58 54 ? ? ? B . n B 1 59 PHE 59 55 ? ? ? B . n B 1 60 SER 60 56 ? ? ? B . n C 1 1 TRP 1 -3 ? ? ? C . n C 1 2 GLU 2 -2 ? ? ? C . n C 1 3 GLU 3 -1 ? ? ? C . n C 1 4 GLU 4 0 ? ? ? C . n C 1 5 ASP 5 1 1 ASP ASP C . n C 1 6 VAL 6 2 2 VAL VAL C . n C 1 7 ILE 7 3 3 ILE ILE C . n C 1 8 CYS 8 4 4 CYS CYS C . n C 1 9 ASP 9 5 5 ASP ASP C . n C 1 10 GLY 10 6 6 GLY GLY C . n C 1 11 CYS 11 7 7 CYS CYS C . n C 1 12 ASN 12 8 8 ASN ASN C . n C 1 13 GLY 13 9 9 GLY GLY C . n C 1 14 PRO 14 10 10 PRO PRO C . n C 1 15 VAL 15 11 11 VAL VAL C . n C 1 16 VAL 16 12 12 VAL VAL C . n C 1 17 GLY 17 13 13 GLY GLY C . n C 1 18 THR 18 14 14 THR THR C . n C 1 19 ARG 19 15 15 ARG ARG C . n C 1 20 TYR 20 16 16 TYR TYR C . n C 1 21 LYS 21 17 17 LYS LYS C . n C 1 22 CYS 22 18 18 CYS CYS C . n C 1 23 SER 23 19 19 SER SER C . n C 1 24 VAL 24 20 20 VAL VAL C . n C 1 25 CYS 25 21 21 CYS CYS C . n C 1 26 PRO 26 22 22 PRO PRO C . n C 1 27 ASP 27 23 23 ASP ASP C . n C 1 28 TYR 28 24 24 TYR TYR C . n C 1 29 ASP 29 25 25 ASP ASP C . n C 1 30 LEU 30 26 26 LEU LEU C . n C 1 31 CYS 31 27 27 CYS CYS C . n C 1 32 SER 32 28 28 SER SER C . n C 1 33 VAL 33 29 29 VAL VAL C . n C 1 34 CYS 34 30 30 CYS CYS C . n C 1 35 GLU 35 31 31 GLU GLU C . n C 1 36 GLY 36 32 32 GLY GLY C . n C 1 37 LYS 37 33 33 LYS LYS C . n C 1 38 GLY 38 34 34 GLY GLY C . n C 1 39 LEU 39 35 35 LEU LEU C . n C 1 40 HIS 40 36 36 HIS HIS C . n C 1 41 ARG 41 37 37 ARG ARG C . n C 1 42 GLY 42 38 38 GLY GLY C . n C 1 43 HIS 43 39 39 HIS HIS C . n C 1 44 THR 44 40 40 THR THR C . n C 1 45 LYS 45 41 41 LYS LYS C . n C 1 46 LEU 46 42 42 LEU LEU C . n C 1 47 ALA 47 43 43 ALA ALA C . n C 1 48 PHE 48 44 44 PHE PHE C . n C 1 49 PRO 49 45 45 PRO PRO C . n C 1 50 SER 50 46 ? ? ? C . n C 1 51 PRO 51 47 ? ? ? C . n C 1 52 PHE 52 48 ? ? ? C . n C 1 53 GLY 53 49 ? ? ? C . n C 1 54 HIS 54 50 ? ? ? C . n C 1 55 LEU 55 51 ? ? ? C . n C 1 56 SER 56 52 ? ? ? C . n C 1 57 GLU 57 53 ? ? ? C . n C 1 58 GLY 58 54 ? ? ? C . n C 1 59 PHE 59 55 ? ? ? C . n C 1 60 SER 60 56 ? ? ? C . n D 1 1 TRP 1 -3 ? ? ? D . n D 1 2 GLU 2 -2 ? ? ? D . n D 1 3 GLU 3 -1 ? ? ? D . n D 1 4 GLU 4 0 ? ? ? D . n D 1 5 ASP 5 1 1 ASP ASP D . n D 1 6 VAL 6 2 2 VAL VAL D . n D 1 7 ILE 7 3 3 ILE ILE D . n D 1 8 CYS 8 4 4 CYS CYS D . n D 1 9 ASP 9 5 5 ASP ASP D . n D 1 10 GLY 10 6 6 GLY GLY D . n D 1 11 CYS 11 7 7 CYS CYS D . n D 1 12 ASN 12 8 8 ASN ASN D . n D 1 13 GLY 13 9 9 GLY GLY D . n D 1 14 PRO 14 10 10 PRO PRO D . n D 1 15 VAL 15 11 11 VAL VAL D . n D 1 16 VAL 16 12 12 VAL VAL D . n D 1 17 GLY 17 13 13 GLY GLY D . n D 1 18 THR 18 14 14 THR THR D . n D 1 19 ARG 19 15 15 ARG ARG D . n D 1 20 TYR 20 16 16 TYR TYR D . n D 1 21 LYS 21 17 17 LYS LYS D . n D 1 22 CYS 22 18 18 CYS CYS D . n D 1 23 SER 23 19 19 SER SER D . n D 1 24 VAL 24 20 20 VAL VAL D . n D 1 25 CYS 25 21 21 CYS CYS D . n D 1 26 PRO 26 22 22 PRO PRO D . n D 1 27 ASP 27 23 23 ASP ASP D . n D 1 28 TYR 28 24 24 TYR TYR D . n D 1 29 ASP 29 25 25 ASP ASP D . n D 1 30 LEU 30 26 26 LEU LEU D . n D 1 31 CYS 31 27 27 CYS CYS D . n D 1 32 SER 32 28 28 SER SER D . n D 1 33 VAL 33 29 29 VAL VAL D . n D 1 34 CYS 34 30 30 CYS CYS D . n D 1 35 GLU 35 31 31 GLU GLU D . n D 1 36 GLY 36 32 32 GLY GLY D . n D 1 37 LYS 37 33 33 LYS LYS D . n D 1 38 GLY 38 34 34 GLY GLY D . n D 1 39 LEU 39 35 35 LEU LEU D . n D 1 40 HIS 40 36 36 HIS HIS D . n D 1 41 ARG 41 37 37 ARG ARG D . n D 1 42 GLY 42 38 38 GLY GLY D . n D 1 43 HIS 43 39 39 HIS HIS D . n D 1 44 THR 44 40 40 THR THR D . n D 1 45 LYS 45 41 41 LYS LYS D . n D 1 46 LEU 46 42 42 LEU LEU D . n D 1 47 ALA 47 43 43 ALA ALA D . n D 1 48 PHE 48 44 44 PHE PHE D . n D 1 49 PRO 49 45 45 PRO PRO D . n D 1 50 SER 50 46 ? ? ? D . n D 1 51 PRO 51 47 ? ? ? D . n D 1 52 PHE 52 48 ? ? ? D . n D 1 53 GLY 53 49 ? ? ? D . n D 1 54 HIS 54 50 ? ? ? D . n D 1 55 LEU 55 51 ? ? ? D . n D 1 56 SER 56 52 ? ? ? D . n D 1 57 GLU 57 53 ? ? ? D . n D 1 58 GLY 58 54 ? ? ? D . n D 1 59 PHE 59 55 ? ? ? D . n D 1 60 SER 60 56 ? ? ? D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 ZN 1 101 101 ZN ZN A . F 2 ZN 1 102 102 ZN ZN A . G 2 ZN 1 101 101 ZN ZN B . H 2 ZN 1 102 102 ZN ZN B . I 2 ZN 1 101 101 ZN ZN C . J 2 ZN 1 102 102 ZN ZN C . K 2 ZN 1 101 101 ZN ZN D . L 2 ZN 1 102 102 ZN ZN D . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(1.12_2829)' 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _cell.entry_id 5YPF _cell.length_a 114.964 _cell.length_b 114.964 _cell.length_c 114.964 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 96 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5YPF _symmetry.space_group_name_H-M 'I 2 3' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5YPF _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.42 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 49.16 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details 'PEG 2000, Tris' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 173 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'MAR CCD 165 mm' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2016-08-10 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SPRING-8 BEAMLINE BL44XU' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL44XU _diffrn_source.pdbx_synchrotron_site SPring-8 # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5YPF _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.953 _reflns.d_resolution_low 40.65 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 5464 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.9 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 10.6 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 50.0 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high . _reflns_shell.d_res_low ? _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all ? _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 5YPF _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 5464 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.36 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 40.646 _refine.ls_d_res_high 2.951 _refine.ls_percent_reflns_obs 99.78 _refine.ls_R_factor_obs 0.2438 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2395 _refine.ls_R_factor_R_free 0.2854 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.66 _refine.ls_number_reflns_R_free 528 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.39 _refine.pdbx_overall_phase_error 30.66 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1410 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 8 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 1418 _refine_hist.d_res_high 2.951 _refine_hist.d_res_low 40.646 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.006 ? ? 1442 'X-RAY DIFFRACTION' ? f_angle_d 1.087 ? ? 1950 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 13.197 ? ? 850 'X-RAY DIFFRACTION' ? f_chiral_restr 0.065 ? ? 208 'X-RAY DIFFRACTION' ? f_plane_restr 0.006 ? ? 256 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all 'X-RAY DIFFRACTION' . 2.9507 3.2475 1225 0.2791 100.00 0.3421 . . 128 . . 'X-RAY DIFFRACTION' . 3.2475 3.7172 1217 0.2784 100.00 0.3721 . . 129 . . 'X-RAY DIFFRACTION' . 3.7172 4.6822 1222 0.2345 100.00 0.2729 . . 130 . . 'X-RAY DIFFRACTION' . 4.6822 40.6497 1272 0.2174 99.00 0.2509 . . 141 . . # _struct.entry_id 5YPF _struct.title 'p62/SQSTM1 ZZ domain with Trp-peptide' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5YPF _struct_keywords.text 'Complex, p62/SQSTM1, ZZ domain, Autophagy, N-end rule, SIGNALING PROTEIN' _struct_keywords.pdbx_keywords 'SIGNALING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 2 ? J N N 2 ? K N N 2 ? L N N 2 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP GRP78_HUMAN P11021 ? 1 EEED 19 2 UNP SQSTM_HUMAN Q13501 ? 1 VICDGCNGPVVGTRYKCSVCPDYDLCSVCEGKGLHRGHTKLAFPSPFGHLSEGFS 126 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5YPF A 2 ? 5 ? P11021 19 ? 22 ? -2 1 2 2 5YPF A 6 ? 60 ? Q13501 126 ? 180 ? 2 56 3 1 5YPF B 2 ? 5 ? P11021 19 ? 22 ? -2 1 4 2 5YPF B 6 ? 60 ? Q13501 126 ? 180 ? 2 56 5 1 5YPF C 2 ? 5 ? P11021 19 ? 22 ? -2 1 6 2 5YPF C 6 ? 60 ? Q13501 126 ? 180 ? 2 56 7 1 5YPF D 2 ? 5 ? P11021 19 ? 22 ? -2 1 8 2 5YPF D 6 ? 60 ? Q13501 126 ? 180 ? 2 56 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5YPF TRP A 1 ? UNP P11021 ? ? 'see sequence details' -3 1 3 5YPF TRP B 1 ? UNP P11021 ? ? 'see sequence details' -3 2 5 5YPF TRP C 1 ? UNP P11021 ? ? 'see sequence details' -3 3 7 5YPF TRP D 1 ? UNP P11021 ? ? 'see sequence details' -3 4 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 author_defined_assembly ? monomeric 1 3 author_defined_assembly ? monomeric 1 4 author_defined_assembly ? monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,E,F 2 1 B,G,H 3 1 C,I,J 4 1 D,K,L # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 CYS A 31 ? LYS A 37 ? CYS A 27 LYS A 33 1 ? 7 HELX_P HELX_P2 AA2 CYS B 31 ? LYS B 37 ? CYS B 27 LYS B 33 1 ? 7 HELX_P HELX_P3 AA3 CYS C 31 ? LYS C 37 ? CYS C 27 LYS C 33 1 ? 7 HELX_P HELX_P4 AA4 CYS D 31 ? LYS D 37 ? CYS D 27 LYS D 33 1 ? 7 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A CYS 8 SG ? ? ? 1_555 E ZN . ZN ? ? A CYS 4 A ZN 101 1_555 ? ? ? ? ? ? ? 2.265 ? ? metalc2 metalc ? ? A CYS 11 SG ? ? ? 1_555 E ZN . ZN ? ? A CYS 7 A ZN 101 1_555 ? ? ? ? ? ? ? 2.209 ? ? metalc3 metalc ? ? A CYS 22 SG ? ? ? 1_555 F ZN . ZN ? ? A CYS 18 A ZN 102 1_555 ? ? ? ? ? ? ? 2.309 ? ? metalc4 metalc ? ? A CYS 25 SG ? ? ? 1_555 F ZN . ZN ? ? A CYS 21 A ZN 102 1_555 ? ? ? ? ? ? ? 2.624 ? ? metalc5 metalc ? ? A CYS 31 SG ? ? ? 1_555 E ZN . ZN ? ? A CYS 27 A ZN 101 1_555 ? ? ? ? ? ? ? 2.347 ? ? metalc6 metalc ? ? A CYS 34 SG ? ? ? 1_555 E ZN . ZN ? ? A CYS 30 A ZN 101 1_555 ? ? ? ? ? ? ? 2.314 ? ? metalc7 metalc ? ? A HIS 40 NE2 ? ? ? 1_555 F ZN . ZN ? ? A HIS 36 A ZN 102 1_555 ? ? ? ? ? ? ? 2.040 ? ? metalc8 metalc ? ? A HIS 43 ND1 ? ? ? 1_555 F ZN . ZN ? ? A HIS 39 A ZN 102 1_555 ? ? ? ? ? ? ? 1.992 ? ? metalc9 metalc ? ? B CYS 8 SG ? ? ? 1_555 G ZN . ZN ? ? B CYS 4 B ZN 101 1_555 ? ? ? ? ? ? ? 2.247 ? ? metalc10 metalc ? ? B CYS 11 SG ? ? ? 1_555 G ZN . ZN ? ? B CYS 7 B ZN 101 1_555 ? ? ? ? ? ? ? 2.289 ? ? metalc11 metalc ? ? B CYS 22 SG ? ? ? 1_555 H ZN . ZN ? ? B CYS 18 B ZN 102 1_555 ? ? ? ? ? ? ? 2.210 ? ? metalc12 metalc ? ? B CYS 25 SG ? ? ? 1_555 H ZN . ZN ? ? B CYS 21 B ZN 102 1_555 ? ? ? ? ? ? ? 2.540 ? ? metalc13 metalc ? ? B CYS 31 SG ? ? ? 1_555 G ZN . ZN ? ? B CYS 27 B ZN 101 1_555 ? ? ? ? ? ? ? 2.408 ? ? metalc14 metalc ? ? B CYS 34 SG ? ? ? 1_555 G ZN . ZN ? ? B CYS 30 B ZN 101 1_555 ? ? ? ? ? ? ? 2.307 ? ? metalc15 metalc ? ? B HIS 40 NE2 ? ? ? 1_555 H ZN . ZN ? ? B HIS 36 B ZN 102 1_555 ? ? ? ? ? ? ? 2.043 ? ? metalc16 metalc ? ? B HIS 43 ND1 ? ? ? 1_555 H ZN . ZN ? ? B HIS 39 B ZN 102 1_555 ? ? ? ? ? ? ? 1.981 ? ? metalc17 metalc ? ? C CYS 8 SG ? ? ? 1_555 I ZN . ZN ? ? C CYS 4 C ZN 101 1_555 ? ? ? ? ? ? ? 2.146 ? ? metalc18 metalc ? ? C CYS 11 SG ? ? ? 1_555 I ZN . ZN ? ? C CYS 7 C ZN 101 1_555 ? ? ? ? ? ? ? 2.148 ? ? metalc19 metalc ? ? C CYS 22 SG ? ? ? 1_555 J ZN . ZN ? ? C CYS 18 C ZN 102 1_555 ? ? ? ? ? ? ? 2.272 ? ? metalc20 metalc ? ? C CYS 25 SG ? ? ? 1_555 J ZN . ZN ? ? C CYS 21 C ZN 102 1_555 ? ? ? ? ? ? ? 2.545 ? ? metalc21 metalc ? ? C CYS 31 SG ? ? ? 1_555 I ZN . ZN ? ? C CYS 27 C ZN 101 1_555 ? ? ? ? ? ? ? 2.510 ? ? metalc22 metalc ? ? C CYS 34 SG ? ? ? 1_555 I ZN . ZN ? ? C CYS 30 C ZN 101 1_555 ? ? ? ? ? ? ? 2.274 ? ? metalc23 metalc ? ? C HIS 40 NE2 ? ? ? 1_555 J ZN . ZN ? ? C HIS 36 C ZN 102 1_555 ? ? ? ? ? ? ? 2.097 ? ? metalc24 metalc ? ? C HIS 43 ND1 ? ? ? 1_555 J ZN . ZN ? ? C HIS 39 C ZN 102 1_555 ? ? ? ? ? ? ? 2.006 ? ? metalc25 metalc ? ? D CYS 8 SG ? ? ? 1_555 K ZN . ZN ? ? D CYS 4 D ZN 101 1_555 ? ? ? ? ? ? ? 2.345 ? ? metalc26 metalc ? ? D CYS 11 SG ? ? ? 1_555 K ZN . ZN ? ? D CYS 7 D ZN 101 1_555 ? ? ? ? ? ? ? 2.197 ? ? metalc27 metalc ? ? D CYS 22 SG ? ? ? 1_555 L ZN . ZN ? ? D CYS 18 D ZN 102 1_555 ? ? ? ? ? ? ? 2.381 ? ? metalc28 metalc ? ? D CYS 25 SG ? ? ? 1_555 L ZN . ZN ? ? D CYS 21 D ZN 102 1_555 ? ? ? ? ? ? ? 2.418 ? ? metalc29 metalc ? ? D CYS 31 SG ? ? ? 1_555 K ZN . ZN ? ? D CYS 27 D ZN 101 1_555 ? ? ? ? ? ? ? 2.270 ? ? metalc30 metalc ? ? D CYS 34 SG ? ? ? 1_555 K ZN . ZN ? ? D CYS 30 D ZN 101 1_555 ? ? ? ? ? ? ? 2.291 ? ? metalc31 metalc ? ? D HIS 40 NE2 ? ? ? 1_555 L ZN . ZN ? ? D HIS 36 D ZN 102 1_555 ? ? ? ? ? ? ? 2.060 ? ? metalc32 metalc ? ? D HIS 43 ND1 ? ? ? 1_555 L ZN . ZN ? ? D HIS 39 D ZN 102 1_555 ? ? ? ? ? ? ? 2.075 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 SG ? A CYS 8 ? A CYS 4 ? 1_555 ZN ? E ZN . ? A ZN 101 ? 1_555 SG ? A CYS 11 ? A CYS 7 ? 1_555 114.1 ? 2 SG ? A CYS 8 ? A CYS 4 ? 1_555 ZN ? E ZN . ? A ZN 101 ? 1_555 SG ? A CYS 31 ? A CYS 27 ? 1_555 110.7 ? 3 SG ? A CYS 11 ? A CYS 7 ? 1_555 ZN ? E ZN . ? A ZN 101 ? 1_555 SG ? A CYS 31 ? A CYS 27 ? 1_555 108.7 ? 4 SG ? A CYS 8 ? A CYS 4 ? 1_555 ZN ? E ZN . ? A ZN 101 ? 1_555 SG ? A CYS 34 ? A CYS 30 ? 1_555 95.9 ? 5 SG ? A CYS 11 ? A CYS 7 ? 1_555 ZN ? E ZN . ? A ZN 101 ? 1_555 SG ? A CYS 34 ? A CYS 30 ? 1_555 121.3 ? 6 SG ? A CYS 31 ? A CYS 27 ? 1_555 ZN ? E ZN . ? A ZN 101 ? 1_555 SG ? A CYS 34 ? A CYS 30 ? 1_555 105.3 ? 7 SG ? A CYS 22 ? A CYS 18 ? 1_555 ZN ? F ZN . ? A ZN 102 ? 1_555 SG ? A CYS 25 ? A CYS 21 ? 1_555 92.2 ? 8 SG ? A CYS 22 ? A CYS 18 ? 1_555 ZN ? F ZN . ? A ZN 102 ? 1_555 NE2 ? A HIS 40 ? A HIS 36 ? 1_555 113.5 ? 9 SG ? A CYS 25 ? A CYS 21 ? 1_555 ZN ? F ZN . ? A ZN 102 ? 1_555 NE2 ? A HIS 40 ? A HIS 36 ? 1_555 82.7 ? 10 SG ? A CYS 22 ? A CYS 18 ? 1_555 ZN ? F ZN . ? A ZN 102 ? 1_555 ND1 ? A HIS 43 ? A HIS 39 ? 1_555 133.7 ? 11 SG ? A CYS 25 ? A CYS 21 ? 1_555 ZN ? F ZN . ? A ZN 102 ? 1_555 ND1 ? A HIS 43 ? A HIS 39 ? 1_555 88.9 ? 12 NE2 ? A HIS 40 ? A HIS 36 ? 1_555 ZN ? F ZN . ? A ZN 102 ? 1_555 ND1 ? A HIS 43 ? A HIS 39 ? 1_555 112.5 ? 13 SG ? B CYS 8 ? B CYS 4 ? 1_555 ZN ? G ZN . ? B ZN 101 ? 1_555 SG ? B CYS 11 ? B CYS 7 ? 1_555 104.7 ? 14 SG ? B CYS 8 ? B CYS 4 ? 1_555 ZN ? G ZN . ? B ZN 101 ? 1_555 SG ? B CYS 31 ? B CYS 27 ? 1_555 117.2 ? 15 SG ? B CYS 11 ? B CYS 7 ? 1_555 ZN ? G ZN . ? B ZN 101 ? 1_555 SG ? B CYS 31 ? B CYS 27 ? 1_555 116.3 ? 16 SG ? B CYS 8 ? B CYS 4 ? 1_555 ZN ? G ZN . ? B ZN 101 ? 1_555 SG ? B CYS 34 ? B CYS 30 ? 1_555 92.1 ? 17 SG ? B CYS 11 ? B CYS 7 ? 1_555 ZN ? G ZN . ? B ZN 101 ? 1_555 SG ? B CYS 34 ? B CYS 30 ? 1_555 114.2 ? 18 SG ? B CYS 31 ? B CYS 27 ? 1_555 ZN ? G ZN . ? B ZN 101 ? 1_555 SG ? B CYS 34 ? B CYS 30 ? 1_555 110.1 ? 19 SG ? B CYS 22 ? B CYS 18 ? 1_555 ZN ? H ZN . ? B ZN 102 ? 1_555 SG ? B CYS 25 ? B CYS 21 ? 1_555 103.5 ? 20 SG ? B CYS 22 ? B CYS 18 ? 1_555 ZN ? H ZN . ? B ZN 102 ? 1_555 NE2 ? B HIS 40 ? B HIS 36 ? 1_555 114.2 ? 21 SG ? B CYS 25 ? B CYS 21 ? 1_555 ZN ? H ZN . ? B ZN 102 ? 1_555 NE2 ? B HIS 40 ? B HIS 36 ? 1_555 74.9 ? 22 SG ? B CYS 22 ? B CYS 18 ? 1_555 ZN ? H ZN . ? B ZN 102 ? 1_555 ND1 ? B HIS 43 ? B HIS 39 ? 1_555 139.4 ? 23 SG ? B CYS 25 ? B CYS 21 ? 1_555 ZN ? H ZN . ? B ZN 102 ? 1_555 ND1 ? B HIS 43 ? B HIS 39 ? 1_555 83.9 ? 24 NE2 ? B HIS 40 ? B HIS 36 ? 1_555 ZN ? H ZN . ? B ZN 102 ? 1_555 ND1 ? B HIS 43 ? B HIS 39 ? 1_555 106.4 ? 25 SG ? C CYS 8 ? C CYS 4 ? 1_555 ZN ? I ZN . ? C ZN 101 ? 1_555 SG ? C CYS 11 ? C CYS 7 ? 1_555 106.4 ? 26 SG ? C CYS 8 ? C CYS 4 ? 1_555 ZN ? I ZN . ? C ZN 101 ? 1_555 SG ? C CYS 31 ? C CYS 27 ? 1_555 122.5 ? 27 SG ? C CYS 11 ? C CYS 7 ? 1_555 ZN ? I ZN . ? C ZN 101 ? 1_555 SG ? C CYS 31 ? C CYS 27 ? 1_555 94.5 ? 28 SG ? C CYS 8 ? C CYS 4 ? 1_555 ZN ? I ZN . ? C ZN 101 ? 1_555 SG ? C CYS 34 ? C CYS 30 ? 1_555 110.3 ? 29 SG ? C CYS 11 ? C CYS 7 ? 1_555 ZN ? I ZN . ? C ZN 101 ? 1_555 SG ? C CYS 34 ? C CYS 30 ? 1_555 112.3 ? 30 SG ? C CYS 31 ? C CYS 27 ? 1_555 ZN ? I ZN . ? C ZN 101 ? 1_555 SG ? C CYS 34 ? C CYS 30 ? 1_555 109.7 ? 31 SG ? C CYS 22 ? C CYS 18 ? 1_555 ZN ? J ZN . ? C ZN 102 ? 1_555 SG ? C CYS 25 ? C CYS 21 ? 1_555 94.4 ? 32 SG ? C CYS 22 ? C CYS 18 ? 1_555 ZN ? J ZN . ? C ZN 102 ? 1_555 NE2 ? C HIS 40 ? C HIS 36 ? 1_555 115.4 ? 33 SG ? C CYS 25 ? C CYS 21 ? 1_555 ZN ? J ZN . ? C ZN 102 ? 1_555 NE2 ? C HIS 40 ? C HIS 36 ? 1_555 86.5 ? 34 SG ? C CYS 22 ? C CYS 18 ? 1_555 ZN ? J ZN . ? C ZN 102 ? 1_555 ND1 ? C HIS 43 ? C HIS 39 ? 1_555 119.4 ? 35 SG ? C CYS 25 ? C CYS 21 ? 1_555 ZN ? J ZN . ? C ZN 102 ? 1_555 ND1 ? C HIS 43 ? C HIS 39 ? 1_555 83.1 ? 36 NE2 ? C HIS 40 ? C HIS 36 ? 1_555 ZN ? J ZN . ? C ZN 102 ? 1_555 ND1 ? C HIS 43 ? C HIS 39 ? 1_555 124.8 ? 37 SG ? D CYS 8 ? D CYS 4 ? 1_555 ZN ? K ZN . ? D ZN 101 ? 1_555 SG ? D CYS 11 ? D CYS 7 ? 1_555 92.4 ? 38 SG ? D CYS 8 ? D CYS 4 ? 1_555 ZN ? K ZN . ? D ZN 101 ? 1_555 SG ? D CYS 31 ? D CYS 27 ? 1_555 130.0 ? 39 SG ? D CYS 11 ? D CYS 7 ? 1_555 ZN ? K ZN . ? D ZN 101 ? 1_555 SG ? D CYS 31 ? D CYS 27 ? 1_555 101.6 ? 40 SG ? D CYS 8 ? D CYS 4 ? 1_555 ZN ? K ZN . ? D ZN 101 ? 1_555 SG ? D CYS 34 ? D CYS 30 ? 1_555 99.2 ? 41 SG ? D CYS 11 ? D CYS 7 ? 1_555 ZN ? K ZN . ? D ZN 101 ? 1_555 SG ? D CYS 34 ? D CYS 30 ? 1_555 112.6 ? 42 SG ? D CYS 31 ? D CYS 27 ? 1_555 ZN ? K ZN . ? D ZN 101 ? 1_555 SG ? D CYS 34 ? D CYS 30 ? 1_555 118.1 ? 43 SG ? D CYS 22 ? D CYS 18 ? 1_555 ZN ? L ZN . ? D ZN 102 ? 1_555 SG ? D CYS 25 ? D CYS 21 ? 1_555 114.7 ? 44 SG ? D CYS 22 ? D CYS 18 ? 1_555 ZN ? L ZN . ? D ZN 102 ? 1_555 NE2 ? D HIS 40 ? D HIS 36 ? 1_555 102.0 ? 45 SG ? D CYS 25 ? D CYS 21 ? 1_555 ZN ? L ZN . ? D ZN 102 ? 1_555 NE2 ? D HIS 40 ? D HIS 36 ? 1_555 124.2 ? 46 SG ? D CYS 22 ? D CYS 18 ? 1_555 ZN ? L ZN . ? D ZN 102 ? 1_555 ND1 ? D HIS 43 ? D HIS 39 ? 1_555 100.5 ? 47 SG ? D CYS 25 ? D CYS 21 ? 1_555 ZN ? L ZN . ? D ZN 102 ? 1_555 ND1 ? D HIS 43 ? D HIS 39 ? 1_555 114.7 ? 48 NE2 ? D HIS 40 ? D HIS 36 ? 1_555 ZN ? L ZN . ? D ZN 102 ? 1_555 ND1 ? D HIS 43 ? D HIS 39 ? 1_555 97.0 ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 3 ? AA2 ? 6 ? AA3 ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA2 4 5 ? anti-parallel AA2 5 6 ? anti-parallel AA3 1 2 ? anti-parallel AA3 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 ASP A 29 ? LEU A 30 ? ASP A 25 LEU A 26 AA1 2 ARG A 19 ? CYS A 22 ? ARG A 15 CYS A 18 AA1 3 LYS A 45 ? PHE A 48 ? LYS A 41 PHE A 44 AA2 1 ASP B 29 ? LEU B 30 ? ASP B 25 LEU B 26 AA2 2 ARG B 19 ? CYS B 22 ? ARG B 15 CYS B 18 AA2 3 LYS B 45 ? PHE B 48 ? LYS B 41 PHE B 44 AA2 4 LYS D 45 ? PHE D 48 ? LYS D 41 PHE D 44 AA2 5 ARG D 19 ? CYS D 22 ? ARG D 15 CYS D 18 AA2 6 ASP D 29 ? LEU D 30 ? ASP D 25 LEU D 26 AA3 1 ASP C 29 ? LEU C 30 ? ASP C 25 LEU C 26 AA3 2 ARG C 19 ? CYS C 22 ? ARG C 15 CYS C 18 AA3 3 LYS C 45 ? PHE C 48 ? LYS C 41 PHE C 44 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O LEU A 30 ? O LEU A 26 N TYR A 20 ? N TYR A 16 AA1 2 3 N ARG A 19 ? N ARG A 15 O PHE A 48 ? O PHE A 44 AA2 1 2 O LEU B 30 ? O LEU B 26 N TYR B 20 ? N TYR B 16 AA2 2 3 N LYS B 21 ? N LYS B 17 O LEU B 46 ? O LEU B 42 AA2 3 4 N LYS B 45 ? N LYS B 41 O ALA D 47 ? O ALA D 43 AA2 4 5 O LEU D 46 ? O LEU D 42 N LYS D 21 ? N LYS D 17 AA2 5 6 N TYR D 20 ? N TYR D 16 O LEU D 30 ? O LEU D 26 AA3 1 2 O LEU C 30 ? O LEU C 26 N TYR C 20 ? N TYR C 16 AA3 2 3 N LYS C 21 ? N LYS C 17 O LEU C 46 ? O LEU C 42 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A ZN 101 ? 4 'binding site for residue ZN A 101' AC2 Software A ZN 102 ? 4 'binding site for residue ZN A 102' AC3 Software B ZN 101 ? 4 'binding site for residue ZN B 101' AC4 Software B ZN 102 ? 4 'binding site for residue ZN B 102' AC5 Software C ZN 101 ? 4 'binding site for residue ZN C 101' AC6 Software C ZN 102 ? 4 'binding site for residue ZN C 102' AC7 Software D ZN 101 ? 4 'binding site for residue ZN D 101' AC8 Software D ZN 102 ? 4 'binding site for residue ZN D 102' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 CYS A 8 ? CYS A 4 . ? 1_555 ? 2 AC1 4 CYS A 11 ? CYS A 7 . ? 1_555 ? 3 AC1 4 CYS A 31 ? CYS A 27 . ? 1_555 ? 4 AC1 4 CYS A 34 ? CYS A 30 . ? 1_555 ? 5 AC2 4 CYS A 22 ? CYS A 18 . ? 1_555 ? 6 AC2 4 CYS A 25 ? CYS A 21 . ? 1_555 ? 7 AC2 4 HIS A 40 ? HIS A 36 . ? 1_555 ? 8 AC2 4 HIS A 43 ? HIS A 39 . ? 1_555 ? 9 AC3 4 CYS B 8 ? CYS B 4 . ? 1_555 ? 10 AC3 4 CYS B 11 ? CYS B 7 . ? 1_555 ? 11 AC3 4 CYS B 31 ? CYS B 27 . ? 1_555 ? 12 AC3 4 CYS B 34 ? CYS B 30 . ? 1_555 ? 13 AC4 4 CYS B 22 ? CYS B 18 . ? 1_555 ? 14 AC4 4 CYS B 25 ? CYS B 21 . ? 1_555 ? 15 AC4 4 HIS B 40 ? HIS B 36 . ? 1_555 ? 16 AC4 4 HIS B 43 ? HIS B 39 . ? 1_555 ? 17 AC5 4 CYS C 8 ? CYS C 4 . ? 1_555 ? 18 AC5 4 CYS C 11 ? CYS C 7 . ? 1_555 ? 19 AC5 4 CYS C 31 ? CYS C 27 . ? 1_555 ? 20 AC5 4 CYS C 34 ? CYS C 30 . ? 1_555 ? 21 AC6 4 CYS C 22 ? CYS C 18 . ? 1_555 ? 22 AC6 4 CYS C 25 ? CYS C 21 . ? 1_555 ? 23 AC6 4 HIS C 40 ? HIS C 36 . ? 1_555 ? 24 AC6 4 HIS C 43 ? HIS C 39 . ? 1_555 ? 25 AC7 4 CYS D 8 ? CYS D 4 . ? 1_555 ? 26 AC7 4 CYS D 11 ? CYS D 7 . ? 1_555 ? 27 AC7 4 CYS D 31 ? CYS D 27 . ? 1_555 ? 28 AC7 4 CYS D 34 ? CYS D 30 . ? 1_555 ? 29 AC8 4 CYS D 22 ? CYS D 18 . ? 1_555 ? 30 AC8 4 CYS D 25 ? CYS D 21 . ? 1_555 ? 31 AC8 4 HIS D 40 ? HIS D 36 . ? 1_555 ? 32 AC8 4 HIS D 43 ? HIS D 39 . ? 1_555 ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 HG A CYS 7 ? ? ZN A ZN 101 ? ? 1.15 2 1 HG D CYS 4 ? ? ZN D ZN 101 ? ? 1.22 3 1 HG D CYS 18 ? ? ZN D ZN 102 ? ? 1.24 4 1 HD1 A HIS 39 ? ? ZN A ZN 102 ? ? 1.39 5 1 HG A CYS 27 ? ? ZN A ZN 101 ? ? 1.42 6 1 O A VAL 12 ? ? HH11 B ARG 37 ? ? 1.43 7 1 H D ASP 5 ? ? O D ASP 25 ? ? 1.48 8 1 O A VAL 12 ? ? NH1 B ARG 37 ? ? 2.13 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 OG1 A THR 40 ? ? 1_555 O D SER 19 ? ? 17_545 2.08 2 1 OG1 B THR 40 ? ? 1_555 O C SER 19 ? ? 20_746 2.17 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE B ARG 37 ? ? CZ B ARG 37 ? ? NH1 B ARG 37 ? ? 113.41 120.30 -6.89 0.50 N 2 1 NE B ARG 37 ? ? CZ B ARG 37 ? ? NH2 B ARG 37 ? ? 124.61 120.30 4.31 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 VAL A 20 ? ? -100.17 -61.31 2 1 VAL B 20 ? ? -100.40 -61.53 3 1 ASN C 8 ? ? 58.36 15.33 4 1 VAL D 20 ? ? -102.68 -60.70 # _pdbx_entry_details.entry_id 5YPF _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details 'Trp (-3 position) is synthetic residue generated by special enzyme' _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER 46 ? A SER 50 2 1 Y 1 A PRO 47 ? A PRO 51 3 1 Y 1 A PHE 48 ? A PHE 52 4 1 Y 1 A GLY 49 ? A GLY 53 5 1 Y 1 A HIS 50 ? A HIS 54 6 1 Y 1 A LEU 51 ? A LEU 55 7 1 Y 1 A SER 52 ? A SER 56 8 1 Y 1 A GLU 53 ? A GLU 57 9 1 Y 1 A GLY 54 ? A GLY 58 10 1 Y 1 A PHE 55 ? A PHE 59 11 1 Y 1 A SER 56 ? A SER 60 12 1 Y 1 B SER 46 ? B SER 50 13 1 Y 1 B PRO 47 ? B PRO 51 14 1 Y 1 B PHE 48 ? B PHE 52 15 1 Y 1 B GLY 49 ? B GLY 53 16 1 Y 1 B HIS 50 ? B HIS 54 17 1 Y 1 B LEU 51 ? B LEU 55 18 1 Y 1 B SER 52 ? B SER 56 19 1 Y 1 B GLU 53 ? B GLU 57 20 1 Y 1 B GLY 54 ? B GLY 58 21 1 Y 1 B PHE 55 ? B PHE 59 22 1 Y 1 B SER 56 ? B SER 60 23 1 Y 1 C TRP -3 ? C TRP 1 24 1 Y 1 C GLU -2 ? C GLU 2 25 1 Y 1 C GLU -1 ? C GLU 3 26 1 Y 1 C GLU 0 ? C GLU 4 27 1 Y 1 C SER 46 ? C SER 50 28 1 Y 1 C PRO 47 ? C PRO 51 29 1 Y 1 C PHE 48 ? C PHE 52 30 1 Y 1 C GLY 49 ? C GLY 53 31 1 Y 1 C HIS 50 ? C HIS 54 32 1 Y 1 C LEU 51 ? C LEU 55 33 1 Y 1 C SER 52 ? C SER 56 34 1 Y 1 C GLU 53 ? C GLU 57 35 1 Y 1 C GLY 54 ? C GLY 58 36 1 Y 1 C PHE 55 ? C PHE 59 37 1 Y 1 C SER 56 ? C SER 60 38 1 Y 1 D TRP -3 ? D TRP 1 39 1 Y 1 D GLU -2 ? D GLU 2 40 1 Y 1 D GLU -1 ? D GLU 3 41 1 Y 1 D GLU 0 ? D GLU 4 42 1 Y 1 D SER 46 ? D SER 50 43 1 Y 1 D PRO 47 ? D PRO 51 44 1 Y 1 D PHE 48 ? D PHE 52 45 1 Y 1 D GLY 49 ? D GLY 53 46 1 Y 1 D HIS 50 ? D HIS 54 47 1 Y 1 D LEU 51 ? D LEU 55 48 1 Y 1 D SER 52 ? D SER 56 49 1 Y 1 D GLU 53 ? D GLU 57 50 1 Y 1 D GLY 54 ? D GLY 58 51 1 Y 1 D PHE 55 ? D PHE 59 52 1 Y 1 D SER 56 ? D SER 60 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLU N N N N 88 GLU CA C N S 89 GLU C C N N 90 GLU O O N N 91 GLU CB C N N 92 GLU CG C N N 93 GLU CD C N N 94 GLU OE1 O N N 95 GLU OE2 O N N 96 GLU OXT O N N 97 GLU H H N N 98 GLU H2 H N N 99 GLU HA H N N 100 GLU HB2 H N N 101 GLU HB3 H N N 102 GLU HG2 H N N 103 GLU HG3 H N N 104 GLU HE2 H N N 105 GLU HXT H N N 106 GLY N N N N 107 GLY CA C N N 108 GLY C C N N 109 GLY O O N N 110 GLY OXT O N N 111 GLY H H N N 112 GLY H2 H N N 113 GLY HA2 H N N 114 GLY HA3 H N N 115 GLY HXT H N N 116 HIS N N N N 117 HIS CA C N S 118 HIS C C N N 119 HIS O O N N 120 HIS CB C N N 121 HIS CG C Y N 122 HIS ND1 N Y N 123 HIS CD2 C Y N 124 HIS CE1 C Y N 125 HIS NE2 N Y N 126 HIS OXT O N N 127 HIS H H N N 128 HIS H2 H N N 129 HIS HA H N N 130 HIS HB2 H N N 131 HIS HB3 H N N 132 HIS HD1 H N N 133 HIS HD2 H N N 134 HIS HE1 H N N 135 HIS HE2 H N N 136 HIS HXT H N N 137 ILE N N N N 138 ILE CA C N S 139 ILE C C N N 140 ILE O O N N 141 ILE CB C N S 142 ILE CG1 C N N 143 ILE CG2 C N N 144 ILE CD1 C N N 145 ILE OXT O N N 146 ILE H H N N 147 ILE H2 H N N 148 ILE HA H N N 149 ILE HB H N N 150 ILE HG12 H N N 151 ILE HG13 H N N 152 ILE HG21 H N N 153 ILE HG22 H N N 154 ILE HG23 H N N 155 ILE HD11 H N N 156 ILE HD12 H N N 157 ILE HD13 H N N 158 ILE HXT H N N 159 LEU N N N N 160 LEU CA C N S 161 LEU C C N N 162 LEU O O N N 163 LEU CB C N N 164 LEU CG C N N 165 LEU CD1 C N N 166 LEU CD2 C N N 167 LEU OXT O N N 168 LEU H H N N 169 LEU H2 H N N 170 LEU HA H N N 171 LEU HB2 H N N 172 LEU HB3 H N N 173 LEU HG H N N 174 LEU HD11 H N N 175 LEU HD12 H N N 176 LEU HD13 H N N 177 LEU HD21 H N N 178 LEU HD22 H N N 179 LEU HD23 H N N 180 LEU HXT H N N 181 LYS N N N N 182 LYS CA C N S 183 LYS C C N N 184 LYS O O N N 185 LYS CB C N N 186 LYS CG C N N 187 LYS CD C N N 188 LYS CE C N N 189 LYS NZ N N N 190 LYS OXT O N N 191 LYS H H N N 192 LYS H2 H N N 193 LYS HA H N N 194 LYS HB2 H N N 195 LYS HB3 H N N 196 LYS HG2 H N N 197 LYS HG3 H N N 198 LYS HD2 H N N 199 LYS HD3 H N N 200 LYS HE2 H N N 201 LYS HE3 H N N 202 LYS HZ1 H N N 203 LYS HZ2 H N N 204 LYS HZ3 H N N 205 LYS HXT H N N 206 PHE N N N N 207 PHE CA C N S 208 PHE C C N N 209 PHE O O N N 210 PHE CB C N N 211 PHE CG C Y N 212 PHE CD1 C Y N 213 PHE CD2 C Y N 214 PHE CE1 C Y N 215 PHE CE2 C Y N 216 PHE CZ C Y N 217 PHE OXT O N N 218 PHE H H N N 219 PHE H2 H N N 220 PHE HA H N N 221 PHE HB2 H N N 222 PHE HB3 H N N 223 PHE HD1 H N N 224 PHE HD2 H N N 225 PHE HE1 H N N 226 PHE HE2 H N N 227 PHE HZ H N N 228 PHE HXT H N N 229 PRO N N N N 230 PRO CA C N S 231 PRO C C N N 232 PRO O O N N 233 PRO CB C N N 234 PRO CG C N N 235 PRO CD C N N 236 PRO OXT O N N 237 PRO H H N N 238 PRO HA H N N 239 PRO HB2 H N N 240 PRO HB3 H N N 241 PRO HG2 H N N 242 PRO HG3 H N N 243 PRO HD2 H N N 244 PRO HD3 H N N 245 PRO HXT H N N 246 SER N N N N 247 SER CA C N S 248 SER C C N N 249 SER O O N N 250 SER CB C N N 251 SER OG O N N 252 SER OXT O N N 253 SER H H N N 254 SER H2 H N N 255 SER HA H N N 256 SER HB2 H N N 257 SER HB3 H N N 258 SER HG H N N 259 SER HXT H N N 260 THR N N N N 261 THR CA C N S 262 THR C C N N 263 THR O O N N 264 THR CB C N R 265 THR OG1 O N N 266 THR CG2 C N N 267 THR OXT O N N 268 THR H H N N 269 THR H2 H N N 270 THR HA H N N 271 THR HB H N N 272 THR HG1 H N N 273 THR HG21 H N N 274 THR HG22 H N N 275 THR HG23 H N N 276 THR HXT H N N 277 TRP N N N N 278 TRP CA C N S 279 TRP C C N N 280 TRP O O N N 281 TRP CB C N N 282 TRP CG C Y N 283 TRP CD1 C Y N 284 TRP CD2 C Y N 285 TRP NE1 N Y N 286 TRP CE2 C Y N 287 TRP CE3 C Y N 288 TRP CZ2 C Y N 289 TRP CZ3 C Y N 290 TRP CH2 C Y N 291 TRP OXT O N N 292 TRP H H N N 293 TRP H2 H N N 294 TRP HA H N N 295 TRP HB2 H N N 296 TRP HB3 H N N 297 TRP HD1 H N N 298 TRP HE1 H N N 299 TRP HE3 H N N 300 TRP HZ2 H N N 301 TRP HZ3 H N N 302 TRP HH2 H N N 303 TRP HXT H N N 304 TYR N N N N 305 TYR CA C N S 306 TYR C C N N 307 TYR O O N N 308 TYR CB C N N 309 TYR CG C Y N 310 TYR CD1 C Y N 311 TYR CD2 C Y N 312 TYR CE1 C Y N 313 TYR CE2 C Y N 314 TYR CZ C Y N 315 TYR OH O N N 316 TYR OXT O N N 317 TYR H H N N 318 TYR H2 H N N 319 TYR HA H N N 320 TYR HB2 H N N 321 TYR HB3 H N N 322 TYR HD1 H N N 323 TYR HD2 H N N 324 TYR HE1 H N N 325 TYR HE2 H N N 326 TYR HH H N N 327 TYR HXT H N N 328 VAL N N N N 329 VAL CA C N S 330 VAL C C N N 331 VAL O O N N 332 VAL CB C N N 333 VAL CG1 C N N 334 VAL CG2 C N N 335 VAL OXT O N N 336 VAL H H N N 337 VAL H2 H N N 338 VAL HA H N N 339 VAL HB H N N 340 VAL HG11 H N N 341 VAL HG12 H N N 342 VAL HG13 H N N 343 VAL HG21 H N N 344 VAL HG22 H N N 345 VAL HG23 H N N 346 VAL HXT H N N 347 ZN ZN ZN N N 348 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLU N CA sing N N 83 GLU N H sing N N 84 GLU N H2 sing N N 85 GLU CA C sing N N 86 GLU CA CB sing N N 87 GLU CA HA sing N N 88 GLU C O doub N N 89 GLU C OXT sing N N 90 GLU CB CG sing N N 91 GLU CB HB2 sing N N 92 GLU CB HB3 sing N N 93 GLU CG CD sing N N 94 GLU CG HG2 sing N N 95 GLU CG HG3 sing N N 96 GLU CD OE1 doub N N 97 GLU CD OE2 sing N N 98 GLU OE2 HE2 sing N N 99 GLU OXT HXT sing N N 100 GLY N CA sing N N 101 GLY N H sing N N 102 GLY N H2 sing N N 103 GLY CA C sing N N 104 GLY CA HA2 sing N N 105 GLY CA HA3 sing N N 106 GLY C O doub N N 107 GLY C OXT sing N N 108 GLY OXT HXT sing N N 109 HIS N CA sing N N 110 HIS N H sing N N 111 HIS N H2 sing N N 112 HIS CA C sing N N 113 HIS CA CB sing N N 114 HIS CA HA sing N N 115 HIS C O doub N N 116 HIS C OXT sing N N 117 HIS CB CG sing N N 118 HIS CB HB2 sing N N 119 HIS CB HB3 sing N N 120 HIS CG ND1 sing Y N 121 HIS CG CD2 doub Y N 122 HIS ND1 CE1 doub Y N 123 HIS ND1 HD1 sing N N 124 HIS CD2 NE2 sing Y N 125 HIS CD2 HD2 sing N N 126 HIS CE1 NE2 sing Y N 127 HIS CE1 HE1 sing N N 128 HIS NE2 HE2 sing N N 129 HIS OXT HXT sing N N 130 ILE N CA sing N N 131 ILE N H sing N N 132 ILE N H2 sing N N 133 ILE CA C sing N N 134 ILE CA CB sing N N 135 ILE CA HA sing N N 136 ILE C O doub N N 137 ILE C OXT sing N N 138 ILE CB CG1 sing N N 139 ILE CB CG2 sing N N 140 ILE CB HB sing N N 141 ILE CG1 CD1 sing N N 142 ILE CG1 HG12 sing N N 143 ILE CG1 HG13 sing N N 144 ILE CG2 HG21 sing N N 145 ILE CG2 HG22 sing N N 146 ILE CG2 HG23 sing N N 147 ILE CD1 HD11 sing N N 148 ILE CD1 HD12 sing N N 149 ILE CD1 HD13 sing N N 150 ILE OXT HXT sing N N 151 LEU N CA sing N N 152 LEU N H sing N N 153 LEU N H2 sing N N 154 LEU CA C sing N N 155 LEU CA CB sing N N 156 LEU CA HA sing N N 157 LEU C O doub N N 158 LEU C OXT sing N N 159 LEU CB CG sing N N 160 LEU CB HB2 sing N N 161 LEU CB HB3 sing N N 162 LEU CG CD1 sing N N 163 LEU CG CD2 sing N N 164 LEU CG HG sing N N 165 LEU CD1 HD11 sing N N 166 LEU CD1 HD12 sing N N 167 LEU CD1 HD13 sing N N 168 LEU CD2 HD21 sing N N 169 LEU CD2 HD22 sing N N 170 LEU CD2 HD23 sing N N 171 LEU OXT HXT sing N N 172 LYS N CA sing N N 173 LYS N H sing N N 174 LYS N H2 sing N N 175 LYS CA C sing N N 176 LYS CA CB sing N N 177 LYS CA HA sing N N 178 LYS C O doub N N 179 LYS C OXT sing N N 180 LYS CB CG sing N N 181 LYS CB HB2 sing N N 182 LYS CB HB3 sing N N 183 LYS CG CD sing N N 184 LYS CG HG2 sing N N 185 LYS CG HG3 sing N N 186 LYS CD CE sing N N 187 LYS CD HD2 sing N N 188 LYS CD HD3 sing N N 189 LYS CE NZ sing N N 190 LYS CE HE2 sing N N 191 LYS CE HE3 sing N N 192 LYS NZ HZ1 sing N N 193 LYS NZ HZ2 sing N N 194 LYS NZ HZ3 sing N N 195 LYS OXT HXT sing N N 196 PHE N CA sing N N 197 PHE N H sing N N 198 PHE N H2 sing N N 199 PHE CA C sing N N 200 PHE CA CB sing N N 201 PHE CA HA sing N N 202 PHE C O doub N N 203 PHE C OXT sing N N 204 PHE CB CG sing N N 205 PHE CB HB2 sing N N 206 PHE CB HB3 sing N N 207 PHE CG CD1 doub Y N 208 PHE CG CD2 sing Y N 209 PHE CD1 CE1 sing Y N 210 PHE CD1 HD1 sing N N 211 PHE CD2 CE2 doub Y N 212 PHE CD2 HD2 sing N N 213 PHE CE1 CZ doub Y N 214 PHE CE1 HE1 sing N N 215 PHE CE2 CZ sing Y N 216 PHE CE2 HE2 sing N N 217 PHE CZ HZ sing N N 218 PHE OXT HXT sing N N 219 PRO N CA sing N N 220 PRO N CD sing N N 221 PRO N H sing N N 222 PRO CA C sing N N 223 PRO CA CB sing N N 224 PRO CA HA sing N N 225 PRO C O doub N N 226 PRO C OXT sing N N 227 PRO CB CG sing N N 228 PRO CB HB2 sing N N 229 PRO CB HB3 sing N N 230 PRO CG CD sing N N 231 PRO CG HG2 sing N N 232 PRO CG HG3 sing N N 233 PRO CD HD2 sing N N 234 PRO CD HD3 sing N N 235 PRO OXT HXT sing N N 236 SER N CA sing N N 237 SER N H sing N N 238 SER N H2 sing N N 239 SER CA C sing N N 240 SER CA CB sing N N 241 SER CA HA sing N N 242 SER C O doub N N 243 SER C OXT sing N N 244 SER CB OG sing N N 245 SER CB HB2 sing N N 246 SER CB HB3 sing N N 247 SER OG HG sing N N 248 SER OXT HXT sing N N 249 THR N CA sing N N 250 THR N H sing N N 251 THR N H2 sing N N 252 THR CA C sing N N 253 THR CA CB sing N N 254 THR CA HA sing N N 255 THR C O doub N N 256 THR C OXT sing N N 257 THR CB OG1 sing N N 258 THR CB CG2 sing N N 259 THR CB HB sing N N 260 THR OG1 HG1 sing N N 261 THR CG2 HG21 sing N N 262 THR CG2 HG22 sing N N 263 THR CG2 HG23 sing N N 264 THR OXT HXT sing N N 265 TRP N CA sing N N 266 TRP N H sing N N 267 TRP N H2 sing N N 268 TRP CA C sing N N 269 TRP CA CB sing N N 270 TRP CA HA sing N N 271 TRP C O doub N N 272 TRP C OXT sing N N 273 TRP CB CG sing N N 274 TRP CB HB2 sing N N 275 TRP CB HB3 sing N N 276 TRP CG CD1 doub Y N 277 TRP CG CD2 sing Y N 278 TRP CD1 NE1 sing Y N 279 TRP CD1 HD1 sing N N 280 TRP CD2 CE2 doub Y N 281 TRP CD2 CE3 sing Y N 282 TRP NE1 CE2 sing Y N 283 TRP NE1 HE1 sing N N 284 TRP CE2 CZ2 sing Y N 285 TRP CE3 CZ3 doub Y N 286 TRP CE3 HE3 sing N N 287 TRP CZ2 CH2 doub Y N 288 TRP CZ2 HZ2 sing N N 289 TRP CZ3 CH2 sing Y N 290 TRP CZ3 HZ3 sing N N 291 TRP CH2 HH2 sing N N 292 TRP OXT HXT sing N N 293 TYR N CA sing N N 294 TYR N H sing N N 295 TYR N H2 sing N N 296 TYR CA C sing N N 297 TYR CA CB sing N N 298 TYR CA HA sing N N 299 TYR C O doub N N 300 TYR C OXT sing N N 301 TYR CB CG sing N N 302 TYR CB HB2 sing N N 303 TYR CB HB3 sing N N 304 TYR CG CD1 doub Y N 305 TYR CG CD2 sing Y N 306 TYR CD1 CE1 sing Y N 307 TYR CD1 HD1 sing N N 308 TYR CD2 CE2 doub Y N 309 TYR CD2 HD2 sing N N 310 TYR CE1 CZ doub Y N 311 TYR CE1 HE1 sing N N 312 TYR CE2 CZ sing Y N 313 TYR CE2 HE2 sing N N 314 TYR CZ OH sing N N 315 TYR OH HH sing N N 316 TYR OXT HXT sing N N 317 VAL N CA sing N N 318 VAL N H sing N N 319 VAL N H2 sing N N 320 VAL CA C sing N N 321 VAL CA CB sing N N 322 VAL CA HA sing N N 323 VAL C O doub N N 324 VAL C OXT sing N N 325 VAL CB CG1 sing N N 326 VAL CB CG2 sing N N 327 VAL CB HB sing N N 328 VAL CG1 HG11 sing N N 329 VAL CG1 HG12 sing N N 330 VAL CG1 HG13 sing N N 331 VAL CG2 HG21 sing N N 332 VAL CG2 HG22 sing N N 333 VAL CG2 HG23 sing N N 334 VAL OXT HXT sing N N 335 # _atom_sites.entry_id 5YPF _atom_sites.fract_transf_matrix[1][1] 0.008698 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.008698 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008698 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S ZN # loop_