HEADER HYDROLASE 08-NOV-17 5YR7 TITLE HUMAN METHIONINE AMINOPEPTIDASE TYPE 1B (F309L MUTANT) COMPND MOL_ID: 1; COMPND 2 MOLECULE: METHIONINE AMINOPEPTIDASE 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 81-386; COMPND 5 SYNONYM: METAP 1,PEPTIDASE M 1; COMPND 6 EC: 3.4.11.18; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: METAP1, KIAA0094; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS METAL BINDING PROTEIN, METHIONINE AMINOPEPTIDASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR V.PILLALAMARRI,T.ARYA,A.ADDLAGATTA REVDAT 5 22-NOV-23 5YR7 1 LINK REVDAT 4 27-MAY-20 5YR7 1 REMARK REVDAT 3 20-NOV-19 5YR7 1 LINK REVDAT 2 26-JUN-19 5YR7 1 JRNL REVDAT 1 14-NOV-18 5YR7 0 JRNL AUTH V.PILLALAMARRI,T.ARYA,A.ADDLAGATTA JRNL TITL DIFFERENTIAL INHIBITION OF SUB-TYPE 1 METHIONINE JRNL TITL 2 AMINOPEPTIDASES BY OVALICIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.06 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.06 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.69 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 79.3 REMARK 3 NUMBER OF REFLECTIONS : 16543 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 840 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1041 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 68.61 REMARK 3 BIN R VALUE (WORKING SET) : 0.3200 REMARK 3 BIN FREE R VALUE SET COUNT : 63 REMARK 3 BIN FREE R VALUE : 0.3580 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2392 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 70 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.58 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.272 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.233 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.164 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.464 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.925 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2481 ; 0.015 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2262 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3370 ; 1.699 ; 1.953 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5255 ; 1.027 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 309 ; 7.254 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 114 ;37.812 ;23.158 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 413 ;15.503 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;16.112 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 367 ; 0.097 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2774 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 506 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 5YR7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-NOV-17. REMARK 100 THE DEPOSITION ID IS D_1300005573. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-MAR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO 2.3.1 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK 2.2.0 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17388 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.060 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 79.9 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.06 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.13 REMARK 200 COMPLETENESS FOR SHELL (%) : 78.1 REMARK 200 DATA REDUNDANCY IN SHELL : 1.90 REMARK 200 R MERGE FOR SHELL (I) : 0.45000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2B3K REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BISTRIS PH-6.2, 19% PEG 3350, 5% REMARK 280 GLYCEROL, PH 6.2, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 38.59650 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 68 REMARK 465 GLY A 69 REMARK 465 SER A 70 REMARK 465 SER A 71 REMARK 465 HIS A 72 REMARK 465 HIS A 73 REMARK 465 HIS A 74 REMARK 465 HIS A 75 REMARK 465 HIS A 76 REMARK 465 HIS A 77 REMARK 465 SER A 78 REMARK 465 SER A 79 REMARK 465 GLY A 80 REMARK 465 LEU A 81 REMARK 465 VAL A 82 REMARK 465 PRO A 83 REMARK 465 ARG A 84 REMARK 465 GLY A 85 REMARK 465 SER A 86 REMARK 465 HIS A 87 REMARK 465 MET A 88 REMARK 465 PRO A 89 REMARK 465 GLN A 394 REMARK 465 PHE A 395 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 207 -97.02 52.17 REMARK 500 HIS A 306 -101.35 -174.42 REMARK 500 GLU A 336 55.37 -147.72 REMARK 500 TRP A 349 158.63 -49.01 REMARK 500 TRP A 353 -48.85 -130.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 404 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 99 NE2 REMARK 620 2 HOH A 564 O 112.7 REMARK 620 3 HOH A 568 O 152.0 90.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 405 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 207 O REMARK 620 2 VAL A 209 O 96.9 REMARK 620 3 SER A 363 O 88.4 109.7 REMARK 620 4 HOH A 544 O 128.1 130.4 93.1 REMARK 620 5 HOH A 560 O 156.9 86.5 69.1 60.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 403 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 212 NE2 REMARK 620 2 MET A 406 OXT 149.2 REMARK 620 3 HOH A 545 O 85.8 92.2 REMARK 620 4 HOH A 561 O 86.2 87.9 164.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 401 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 229 OD1 REMARK 620 2 ASP A 229 OD2 54.8 REMARK 620 3 ASP A 240 OD1 93.3 147.7 REMARK 620 4 GLU A 367 OE1 113.0 98.3 89.3 REMARK 620 5 MET A 406 N 75.3 91.8 83.7 169.5 REMARK 620 6 MET A 406 O 146.5 105.8 104.6 95.6 78.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 402 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 240 OD2 REMARK 620 2 HIS A 303 NE2 86.7 REMARK 620 3 GLU A 336 OE1 163.3 90.5 REMARK 620 4 GLU A 367 OE2 84.2 124.7 83.9 REMARK 620 5 MET A 406 O 93.4 112.9 102.9 122.0 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CO A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CO A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CO A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CO A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MET A 406 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5YR6 RELATED DB: PDB REMARK 900 RELATED ID: 5YR5 RELATED DB: PDB REMARK 900 RELATED ID: 5YR4 RELATED DB: PDB REMARK 900 RELATED ID: 5YKP RELATED DB: PDB DBREF 5YR7 A 90 395 UNP P53582 MAP11_HUMAN 81 386 SEQADV 5YR7 MET A 68 UNP P53582 INITIATING METHIONINE SEQADV 5YR7 GLY A 69 UNP P53582 EXPRESSION TAG SEQADV 5YR7 SER A 70 UNP P53582 EXPRESSION TAG SEQADV 5YR7 SER A 71 UNP P53582 EXPRESSION TAG SEQADV 5YR7 HIS A 72 UNP P53582 EXPRESSION TAG SEQADV 5YR7 HIS A 73 UNP P53582 EXPRESSION TAG SEQADV 5YR7 HIS A 74 UNP P53582 EXPRESSION TAG SEQADV 5YR7 HIS A 75 UNP P53582 EXPRESSION TAG SEQADV 5YR7 HIS A 76 UNP P53582 EXPRESSION TAG SEQADV 5YR7 HIS A 77 UNP P53582 EXPRESSION TAG SEQADV 5YR7 SER A 78 UNP P53582 EXPRESSION TAG SEQADV 5YR7 SER A 79 UNP P53582 EXPRESSION TAG SEQADV 5YR7 GLY A 80 UNP P53582 EXPRESSION TAG SEQADV 5YR7 LEU A 81 UNP P53582 EXPRESSION TAG SEQADV 5YR7 VAL A 82 UNP P53582 EXPRESSION TAG SEQADV 5YR7 PRO A 83 UNP P53582 EXPRESSION TAG SEQADV 5YR7 ARG A 84 UNP P53582 EXPRESSION TAG SEQADV 5YR7 GLY A 85 UNP P53582 EXPRESSION TAG SEQADV 5YR7 SER A 86 UNP P53582 EXPRESSION TAG SEQADV 5YR7 HIS A 87 UNP P53582 EXPRESSION TAG SEQADV 5YR7 MET A 88 UNP P53582 EXPRESSION TAG SEQADV 5YR7 PRO A 89 UNP P53582 EXPRESSION TAG SEQADV 5YR7 LEU A 309 UNP P53582 PHE 300 ENGINEERED MUTATION SEQRES 1 A 328 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 328 LEU VAL PRO ARG GLY SER HIS MET PRO TYR ARG TYR THR SEQRES 3 A 328 GLY LYS LEU ARG PRO HIS TYR PRO LEU MET PRO THR ARG SEQRES 4 A 328 PRO VAL PRO SER TYR ILE GLN ARG PRO ASP TYR ALA ASP SEQRES 5 A 328 HIS PRO LEU GLY MET SER GLU SER GLU GLN ALA LEU LYS SEQRES 6 A 328 GLY THR SER GLN ILE LYS LEU LEU SER SER GLU ASP ILE SEQRES 7 A 328 GLU GLY MET ARG LEU VAL CYS ARG LEU ALA ARG GLU VAL SEQRES 8 A 328 LEU ASP VAL ALA ALA GLY MET ILE LYS PRO GLY VAL THR SEQRES 9 A 328 THR GLU GLU ILE ASP HIS ALA VAL HIS LEU ALA CYS ILE SEQRES 10 A 328 ALA ARG ASN CYS TYR PRO SER PRO LEU ASN TYR TYR ASN SEQRES 11 A 328 PHE PRO LYS SER CYS CYS THR SER VAL ASN GLU VAL ILE SEQRES 12 A 328 CYS HIS GLY ILE PRO ASP ARG ARG PRO LEU GLN GLU GLY SEQRES 13 A 328 ASP ILE VAL ASN VAL ASP ILE THR LEU TYR ARG ASN GLY SEQRES 14 A 328 TYR HIS GLY ASP LEU ASN GLU THR PHE PHE VAL GLY GLU SEQRES 15 A 328 VAL ASP ASP GLY ALA ARG LYS LEU VAL GLN THR THR TYR SEQRES 16 A 328 GLU CYS LEU MET GLN ALA ILE ASP ALA VAL LYS PRO GLY SEQRES 17 A 328 VAL ARG TYR ARG GLU LEU GLY ASN ILE ILE GLN LYS HIS SEQRES 18 A 328 ALA GLN ALA ASN GLY PHE SER VAL VAL ARG SER TYR CYS SEQRES 19 A 328 GLY HIS GLY ILE HIS LYS LEU LEU HIS THR ALA PRO ASN SEQRES 20 A 328 VAL PRO HIS TYR ALA LYS ASN LYS ALA VAL GLY VAL MET SEQRES 21 A 328 LYS SER GLY HIS VAL PHE THR ILE GLU PRO MET ILE CYS SEQRES 22 A 328 GLU GLY GLY TRP GLN ASP GLU THR TRP PRO ASP GLY TRP SEQRES 23 A 328 THR ALA VAL THR ARG ASP GLY LYS ARG SER ALA GLN PHE SEQRES 24 A 328 GLU HIS THR LEU LEU VAL THR ASP THR GLY CYS GLU ILE SEQRES 25 A 328 LEU THR ARG ARG LEU ASP SER ALA ARG PRO HIS PHE MET SEQRES 26 A 328 SER GLN PHE HET CO A 401 1 HET CO A 402 1 HET CO A 403 1 HET CO A 404 1 HET NA A 405 1 HET MET A 406 9 HETNAM CO COBALT (II) ION HETNAM NA SODIUM ION HETNAM MET METHIONINE FORMUL 2 CO 4(CO 2+) FORMUL 6 NA NA 1+ FORMUL 7 MET C5 H11 N O2 S FORMUL 8 HOH *70(H2 O) HELIX 1 AA1 PRO A 115 HIS A 120 5 6 HELIX 2 AA2 SER A 125 LEU A 131 1 7 HELIX 3 AA3 SER A 141 MET A 165 1 25 HELIX 4 AA4 THR A 171 ARG A 186 1 16 HELIX 5 AA5 ASN A 194 PHE A 198 5 5 HELIX 6 AA6 ASP A 251 ALA A 271 1 21 HELIX 7 AA7 ARG A 279 ALA A 291 1 13 HELIX 8 AA8 PRO A 389 SER A 393 5 5 SHEET 1 AA1 3 TYR A 189 PRO A 190 0 SHEET 2 AA1 3 ILE A 225 ARG A 234 -1 O TYR A 233 N TYR A 189 SHEET 3 AA1 3 CYS A 203 VAL A 206 -1 N SER A 205 O ASN A 227 SHEET 1 AA2 3 TYR A 189 PRO A 190 0 SHEET 2 AA2 3 ILE A 225 ARG A 234 -1 O TYR A 233 N TYR A 189 SHEET 3 AA2 3 TYR A 237 PHE A 246 -1 O TYR A 237 N ARG A 234 SHEET 1 AA3 3 VAL A 209 CYS A 211 0 SHEET 2 AA3 3 ALA A 355 THR A 357 -1 O ALA A 355 N ILE A 210 SHEET 3 AA3 3 ASP A 346 THR A 348 -1 N GLU A 347 O VAL A 356 SHEET 1 AA4 3 SER A 295 VAL A 296 0 SHEET 2 AA4 3 MET A 338 CYS A 340 -1 O CYS A 340 N SER A 295 SHEET 3 AA4 3 SER A 363 GLN A 365 -1 O ALA A 364 N ILE A 339 SHEET 1 AA5 2 GLY A 302 GLY A 304 0 SHEET 2 AA5 2 THR A 311 VAL A 315 -1 O VAL A 315 N GLY A 302 SHEET 1 AA6 3 VAL A 332 ILE A 335 0 SHEET 2 AA6 3 HIS A 368 VAL A 372 -1 O LEU A 370 N PHE A 333 SHEET 3 AA6 3 CYS A 377 ILE A 379 -1 O GLU A 378 N LEU A 371 LINK NE2 HIS A 99 CO CO A 404 1555 1555 2.19 LINK O ASN A 207 NA NA A 405 1555 1555 2.38 LINK O VAL A 209 NA NA A 405 1555 1555 2.35 LINK NE2 HIS A 212 CO CO A 403 1555 1555 2.15 LINK OD1 ASP A 229 CO CO A 401 1555 1555 2.20 LINK OD2 ASP A 229 CO CO A 401 1555 1555 2.35 LINK OD1 ASP A 240 CO CO A 401 1555 1555 2.02 LINK OD2 ASP A 240 CO CO A 402 1555 1555 2.08 LINK NE2 HIS A 303 CO CO A 402 1555 1555 2.22 LINK OE1 GLU A 336 CO CO A 402 1555 1555 1.95 LINK O SER A 363 NA NA A 405 1555 1555 2.27 LINK OE1 GLU A 367 CO CO A 401 1555 1555 1.99 LINK OE2 GLU A 367 CO CO A 402 1555 1555 1.99 LINK CO CO A 401 N MET A 406 1555 1555 2.27 LINK CO CO A 401 O MET A 406 1555 1555 2.26 LINK CO CO A 402 O MET A 406 1555 1555 1.83 LINK CO CO A 403 OXT MET A 406 1555 1555 2.49 LINK CO CO A 403 O HOH A 545 1555 1555 2.39 LINK CO CO A 403 O HOH A 561 1555 1555 2.41 LINK CO CO A 404 O HOH A 564 1555 1555 2.12 LINK CO CO A 404 O HOH A 568 1555 1555 2.26 LINK NA NA A 405 O HOH A 544 1555 1555 2.16 LINK NA NA A 405 O HOH A 560 1555 1555 3.08 CISPEP 1 TYR A 100 PRO A 101 0 4.13 CISPEP 2 ALA A 312 PRO A 313 0 0.89 SITE 1 AC1 5 ASP A 229 ASP A 240 GLU A 367 CO A 402 SITE 2 AC1 5 MET A 406 SITE 1 AC2 7 ASP A 240 HIS A 303 THR A 334 GLU A 336 SITE 2 AC2 7 GLU A 367 CO A 401 MET A 406 SITE 1 AC3 4 HIS A 212 MET A 406 HOH A 545 HOH A 561 SITE 1 AC4 3 HIS A 99 HOH A 564 HOH A 568 SITE 1 AC5 5 ASN A 207 VAL A 209 SER A 363 HOH A 544 SITE 2 AC5 5 HOH A 560 SITE 1 AC6 12 PHE A 198 ASP A 229 THR A 231 ASP A 240 SITE 2 AC6 12 HIS A 303 HIS A 310 GLU A 336 TRP A 353 SITE 3 AC6 12 GLU A 367 CO A 401 CO A 402 CO A 403 CRYST1 47.414 77.193 48.220 90.00 92.03 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021091 0.000000 0.000747 0.00000 SCALE2 0.000000 0.012955 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020751 0.00000