HEADER HYDROLASE 13-NOV-17 5YS4 TITLE CRYSTAL STRUCTURE OF RETROVIRAL PROTEASE-LIKE DOMAIN OF DDI1 FROM TITLE 2 LEISHMANIA MAJOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA-DAMAGE INDUCIBLE PROTEIN DDI1-LIKE PROTEIN; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEISHMANIA MAJOR; SOURCE 3 ORGANISM_TAXID: 5664; SOURCE 4 STRAIN: FRIEDLIN; SOURCE 5 GENE: LMJF_01_0610; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS RETROPEPSIN, ASPARTIC PROTEASE, CYTOPLASMIC, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR K.SUGUNA,S.KUMAR REVDAT 2 22-NOV-23 5YS4 1 REMARK REVDAT 1 21-NOV-18 5YS4 0 JRNL AUTH S.KUMAR,K.SUGUNA JRNL TITL CRYSTAL STRUCTURE OF THE RETROVIRAL PROTEASE-LIKE DOMAIN OF JRNL TITL 2 A PROTOZOAL DNA DAMAGE-INDUCIBLE 1 PROTEIN. JRNL REF FEBS OPEN BIO V. 8 1379 2018 JRNL REFN ESSN 2211-5463 JRNL PMID 30186740 JRNL DOI 10.1002/2211-5463.12491 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1-2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.34 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 36967 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.238 REMARK 3 R VALUE (WORKING SET) : 0.236 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1912 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 2.3600 - 2.3000 0.96 2548 119 0.2760 0.3110 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.65 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.09000 REMARK 3 B22 (A**2) : -1.87000 REMARK 3 B33 (A**2) : 0.80000 REMARK 3 B12 (A**2) : -0.21000 REMARK 3 B13 (A**2) : -0.07000 REMARK 3 B23 (A**2) : 0.29000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 4 REMARK 4 5YS4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-NOV-17. REMARK 100 THE DEPOSITION ID IS D_1300005816. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-JUL-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36968 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 26.340 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : 2.700 REMARK 200 R MERGE (I) : 0.14500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : 0.80000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2I1A REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM MALONATE, 12 % REMARK 280 POLYETHYLENE GLYCOL 3350, PH 4.5, MICROBATCH, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2040 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 232 REMARK 465 GLY A 233 REMARK 465 VAL A 234 REMARK 465 ALA A 235 REMARK 465 VAL A 236 REMARK 465 GLY A 237 REMARK 465 VAL A 238 REMARK 465 GLY A 239 REMARK 465 ARG A 240 REMARK 465 ALA A 311 REMARK 465 MET B 231 REMARK 465 ARG B 232 REMARK 465 GLY B 233 REMARK 465 VAL B 234 REMARK 465 ALA B 235 REMARK 465 VAL B 236 REMARK 465 GLY B 237 REMARK 465 VAL B 238 REMARK 465 GLY B 239 REMARK 465 ARG B 240 REMARK 465 GLN B 241 REMARK 465 ALA C 182 REMARK 465 MET C 231 REMARK 465 ARG C 232 REMARK 465 GLY C 233 REMARK 465 VAL C 234 REMARK 465 ALA C 235 REMARK 465 VAL C 236 REMARK 465 GLY C 237 REMARK 465 VAL C 238 REMARK 465 GLY C 239 REMARK 465 ARG C 240 REMARK 465 GLN C 241 REMARK 465 ALA C 311 REMARK 465 ALA D 182 REMARK 465 PHE D 183 REMARK 465 ALA D 184 REMARK 465 LYS D 185 REMARK 465 MET D 231 REMARK 465 ARG D 232 REMARK 465 GLY D 233 REMARK 465 VAL D 234 REMARK 465 ALA D 235 REMARK 465 VAL D 236 REMARK 465 GLY D 237 REMARK 465 VAL D 238 REMARK 465 GLY D 239 REMARK 465 ARG D 240 REMARK 465 ALA D 311 REMARK 465 ALA E 182 REMARK 465 PHE E 183 REMARK 465 ALA E 184 REMARK 465 ARG E 230 REMARK 465 MET E 231 REMARK 465 ARG E 232 REMARK 465 GLY E 233 REMARK 465 VAL E 234 REMARK 465 ALA E 235 REMARK 465 VAL E 236 REMARK 465 GLY E 237 REMARK 465 VAL E 238 REMARK 465 GLY E 239 REMARK 465 ARG E 240 REMARK 465 GLN E 241 REMARK 465 GLU E 242 REMARK 465 ILE E 243 REMARK 465 ALA E 311 REMARK 465 ALA F 182 REMARK 465 PHE F 183 REMARK 465 ALA F 184 REMARK 465 LYS F 185 REMARK 465 VAL F 234 REMARK 465 ALA F 235 REMARK 465 VAL F 236 REMARK 465 GLY F 237 REMARK 465 VAL F 238 REMARK 465 GLY F 239 REMARK 465 ARG F 240 REMARK 465 ASP F 308 REMARK 465 LEU F 309 REMARK 465 PRO F 310 REMARK 465 ALA F 311 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 209 CD OE1 REMARK 470 ARG A 216 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 241 CG CD OE1 NE2 REMARK 470 GLU A 242 CG CD OE1 OE2 REMARK 470 ASP A 268 CG OD1 OD2 REMARK 470 LYS B 185 CE NZ REMARK 470 GLN B 197 CG CD OE1 NE2 REMARK 470 ARG B 225 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 230 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 242 CG CD OE1 OE2 REMARK 470 GLU B 267 CD OE1 OE2 REMARK 470 ASP B 268 CG OD1 OD2 REMARK 470 ARG B 282 NE CZ NH1 NH2 REMARK 470 PHE C 183 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG C 216 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 225 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 242 CG CD OE1 OE2 REMARK 470 GLN D 197 CG CD OE1 NE2 REMARK 470 ARG D 216 CG CD NE CZ NH1 NH2 REMARK 470 ARG D 225 CG CD NE CZ NH1 NH2 REMARK 470 ILE D 243 CG1 CG2 CD1 REMARK 470 GLU D 267 CG CD OE1 OE2 REMARK 470 ASP D 268 CG OD1 OD2 REMARK 470 ASP D 297 CG OD1 OD2 REMARK 470 ASN D 298 CG OD1 ND2 REMARK 470 GLU D 306 CG CD OE1 OE2 REMARK 470 LYS E 185 CG CD CE NZ REMARK 470 ASN E 196 CG OD1 ND2 REMARK 470 GLN E 197 CG CD OE1 NE2 REMARK 470 LEU E 199 CG CD1 CD2 REMARK 470 LYS E 215 CG CD CE NZ REMARK 470 ARG E 216 CG CD NE CZ NH1 NH2 REMARK 470 GLU E 219 CG CD OE1 OE2 REMARK 470 LEU E 223 CG CD1 CD2 REMARK 470 ARG E 225 CG CD NE CZ NH1 NH2 REMARK 470 LEU E 226 CG CD1 CD2 REMARK 470 MET E 249 CG SD CE REMARK 470 GLU E 267 CG CD OE1 OE2 REMARK 470 ASP E 268 CG OD1 OD2 REMARK 470 GLN E 269 CG CD OE1 NE2 REMARK 470 ASP E 272 CG OD1 OD2 REMARK 470 GLN E 284 CG CD OE1 NE2 REMARK 470 ASP E 297 CG OD1 OD2 REMARK 470 ASN E 298 CG OD1 ND2 REMARK 470 ASN E 307 CG OD1 ND2 REMARK 470 ASP E 308 CG OD1 OD2 REMARK 470 LEU E 309 CG CD1 CD2 REMARK 470 LYS F 215 CG CD CE NZ REMARK 470 GLU F 219 CG CD OE1 OE2 REMARK 470 ARG F 225 CG CD NE CZ NH1 NH2 REMARK 470 VAL F 229 CG1 CG2 REMARK 470 ARG F 232 CG CD NE CZ NH1 NH2 REMARK 470 GLU F 242 CG CD OE1 OE2 REMARK 470 ILE F 243 CG1 CG2 CD1 REMARK 470 GLU F 267 CG CD OE1 OE2 REMARK 470 ASP F 268 CG OD1 OD2 REMARK 470 ARG F 282 CG CD NE CZ NH1 NH2 REMARK 470 LYS F 290 CG CD CE NZ REMARK 470 ASN F 298 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 298 19.46 58.33 REMARK 500 ASP B 297 -116.45 57.83 REMARK 500 PRO B 310 -170.89 -68.54 REMARK 500 ASP C 268 58.61 -97.67 REMARK 500 ASP D 268 59.87 -97.25 REMARK 500 ASP D 308 30.25 -89.19 REMARK 500 ASP E 308 43.80 -90.18 REMARK 500 MET F 231 55.26 -115.92 REMARK 500 GLU F 242 75.18 59.03 REMARK 500 ASP F 268 62.05 -101.15 REMARK 500 ASP F 297 -123.21 55.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 483 DISTANCE = 6.73 ANGSTROMS REMARK 525 HOH A 484 DISTANCE = 6.80 ANGSTROMS REMARK 525 HOH B 498 DISTANCE = 6.14 ANGSTROMS REMARK 525 HOH B 499 DISTANCE = 6.85 ANGSTROMS REMARK 525 HOH C 482 DISTANCE = 6.13 ANGSTROMS REMARK 525 HOH C 483 DISTANCE = 6.45 ANGSTROMS REMARK 525 HOH C 484 DISTANCE = 6.51 ANGSTROMS REMARK 525 HOH C 485 DISTANCE = 7.17 ANGSTROMS REMARK 525 HOH C 486 DISTANCE = 7.44 ANGSTROMS REMARK 525 HOH C 487 DISTANCE = 7.52 ANGSTROMS REMARK 525 HOH C 488 DISTANCE = 9.42 ANGSTROMS REMARK 525 HOH C 489 DISTANCE = 9.89 ANGSTROMS REMARK 525 HOH D 471 DISTANCE = 5.99 ANGSTROMS REMARK 525 HOH D 472 DISTANCE = 6.17 ANGSTROMS REMARK 525 HOH D 473 DISTANCE = 7.41 ANGSTROMS REMARK 525 HOH D 474 DISTANCE = 7.46 ANGSTROMS REMARK 525 HOH D 475 DISTANCE = 8.30 ANGSTROMS REMARK 525 HOH E 414 DISTANCE = 8.65 ANGSTROMS REMARK 525 HOH E 415 DISTANCE = 9.39 ANGSTROMS DBREF 5YS4 A 182 311 UNP E9AC52 E9AC52_LEIMA 35 164 DBREF 5YS4 B 182 311 UNP E9AC52 E9AC52_LEIMA 35 164 DBREF 5YS4 C 182 311 UNP E9AC52 E9AC52_LEIMA 35 164 DBREF 5YS4 D 182 311 UNP E9AC52 E9AC52_LEIMA 35 164 DBREF 5YS4 E 182 311 UNP E9AC52 E9AC52_LEIMA 35 164 DBREF 5YS4 F 182 311 UNP E9AC52 E9AC52_LEIMA 35 164 SEQRES 1 A 130 ALA PHE ALA LYS VAL THR MET LEU TYR VAL PRO CYS THR SEQRES 2 A 130 ILE ASN GLN VAL LEU VAL LYS ALA PHE VAL ASP SER GLY SEQRES 3 A 130 ALA GLN ASN SER ILE MET ASN LYS ARG THR ALA GLU ARG SEQRES 4 A 130 CYS GLY LEU MET ARG LEU VAL ASP VAL ARG MET ARG GLY SEQRES 5 A 130 VAL ALA VAL GLY VAL GLY ARG GLN GLU ILE CYS GLY ARG SEQRES 6 A 130 ILE HIS MET THR PRO VAL ASN LEU ALA GLY MET TYR ILE SEQRES 7 A 130 PRO PHE ALA PHE TYR VAL ILE GLU ASP GLN ALA MET ASP SEQRES 8 A 130 LEU ILE ILE GLY LEU ASP GLN LEU LYS ARG HIS GLN MET SEQRES 9 A 130 MET ILE ASP LEU LYS HIS ASN CYS LEU THR ILE ASP ASN SEQRES 10 A 130 ILE ASN VAL PRO PHE LEU PRO GLU ASN ASP LEU PRO ALA SEQRES 1 B 130 ALA PHE ALA LYS VAL THR MET LEU TYR VAL PRO CYS THR SEQRES 2 B 130 ILE ASN GLN VAL LEU VAL LYS ALA PHE VAL ASP SER GLY SEQRES 3 B 130 ALA GLN ASN SER ILE MET ASN LYS ARG THR ALA GLU ARG SEQRES 4 B 130 CYS GLY LEU MET ARG LEU VAL ASP VAL ARG MET ARG GLY SEQRES 5 B 130 VAL ALA VAL GLY VAL GLY ARG GLN GLU ILE CYS GLY ARG SEQRES 6 B 130 ILE HIS MET THR PRO VAL ASN LEU ALA GLY MET TYR ILE SEQRES 7 B 130 PRO PHE ALA PHE TYR VAL ILE GLU ASP GLN ALA MET ASP SEQRES 8 B 130 LEU ILE ILE GLY LEU ASP GLN LEU LYS ARG HIS GLN MET SEQRES 9 B 130 MET ILE ASP LEU LYS HIS ASN CYS LEU THR ILE ASP ASN SEQRES 10 B 130 ILE ASN VAL PRO PHE LEU PRO GLU ASN ASP LEU PRO ALA SEQRES 1 C 130 ALA PHE ALA LYS VAL THR MET LEU TYR VAL PRO CYS THR SEQRES 2 C 130 ILE ASN GLN VAL LEU VAL LYS ALA PHE VAL ASP SER GLY SEQRES 3 C 130 ALA GLN ASN SER ILE MET ASN LYS ARG THR ALA GLU ARG SEQRES 4 C 130 CYS GLY LEU MET ARG LEU VAL ASP VAL ARG MET ARG GLY SEQRES 5 C 130 VAL ALA VAL GLY VAL GLY ARG GLN GLU ILE CYS GLY ARG SEQRES 6 C 130 ILE HIS MET THR PRO VAL ASN LEU ALA GLY MET TYR ILE SEQRES 7 C 130 PRO PHE ALA PHE TYR VAL ILE GLU ASP GLN ALA MET ASP SEQRES 8 C 130 LEU ILE ILE GLY LEU ASP GLN LEU LYS ARG HIS GLN MET SEQRES 9 C 130 MET ILE ASP LEU LYS HIS ASN CYS LEU THR ILE ASP ASN SEQRES 10 C 130 ILE ASN VAL PRO PHE LEU PRO GLU ASN ASP LEU PRO ALA SEQRES 1 D 130 ALA PHE ALA LYS VAL THR MET LEU TYR VAL PRO CYS THR SEQRES 2 D 130 ILE ASN GLN VAL LEU VAL LYS ALA PHE VAL ASP SER GLY SEQRES 3 D 130 ALA GLN ASN SER ILE MET ASN LYS ARG THR ALA GLU ARG SEQRES 4 D 130 CYS GLY LEU MET ARG LEU VAL ASP VAL ARG MET ARG GLY SEQRES 5 D 130 VAL ALA VAL GLY VAL GLY ARG GLN GLU ILE CYS GLY ARG SEQRES 6 D 130 ILE HIS MET THR PRO VAL ASN LEU ALA GLY MET TYR ILE SEQRES 7 D 130 PRO PHE ALA PHE TYR VAL ILE GLU ASP GLN ALA MET ASP SEQRES 8 D 130 LEU ILE ILE GLY LEU ASP GLN LEU LYS ARG HIS GLN MET SEQRES 9 D 130 MET ILE ASP LEU LYS HIS ASN CYS LEU THR ILE ASP ASN SEQRES 10 D 130 ILE ASN VAL PRO PHE LEU PRO GLU ASN ASP LEU PRO ALA SEQRES 1 E 130 ALA PHE ALA LYS VAL THR MET LEU TYR VAL PRO CYS THR SEQRES 2 E 130 ILE ASN GLN VAL LEU VAL LYS ALA PHE VAL ASP SER GLY SEQRES 3 E 130 ALA GLN ASN SER ILE MET ASN LYS ARG THR ALA GLU ARG SEQRES 4 E 130 CYS GLY LEU MET ARG LEU VAL ASP VAL ARG MET ARG GLY SEQRES 5 E 130 VAL ALA VAL GLY VAL GLY ARG GLN GLU ILE CYS GLY ARG SEQRES 6 E 130 ILE HIS MET THR PRO VAL ASN LEU ALA GLY MET TYR ILE SEQRES 7 E 130 PRO PHE ALA PHE TYR VAL ILE GLU ASP GLN ALA MET ASP SEQRES 8 E 130 LEU ILE ILE GLY LEU ASP GLN LEU LYS ARG HIS GLN MET SEQRES 9 E 130 MET ILE ASP LEU LYS HIS ASN CYS LEU THR ILE ASP ASN SEQRES 10 E 130 ILE ASN VAL PRO PHE LEU PRO GLU ASN ASP LEU PRO ALA SEQRES 1 F 130 ALA PHE ALA LYS VAL THR MET LEU TYR VAL PRO CYS THR SEQRES 2 F 130 ILE ASN GLN VAL LEU VAL LYS ALA PHE VAL ASP SER GLY SEQRES 3 F 130 ALA GLN ASN SER ILE MET ASN LYS ARG THR ALA GLU ARG SEQRES 4 F 130 CYS GLY LEU MET ARG LEU VAL ASP VAL ARG MET ARG GLY SEQRES 5 F 130 VAL ALA VAL GLY VAL GLY ARG GLN GLU ILE CYS GLY ARG SEQRES 6 F 130 ILE HIS MET THR PRO VAL ASN LEU ALA GLY MET TYR ILE SEQRES 7 F 130 PRO PHE ALA PHE TYR VAL ILE GLU ASP GLN ALA MET ASP SEQRES 8 F 130 LEU ILE ILE GLY LEU ASP GLN LEU LYS ARG HIS GLN MET SEQRES 9 F 130 MET ILE ASP LEU LYS HIS ASN CYS LEU THR ILE ASP ASN SEQRES 10 F 130 ILE ASN VAL PRO PHE LEU PRO GLU ASN ASP LEU PRO ALA FORMUL 7 HOH *381(H2 O) HELIX 1 AA1 LYS A 215 CYS A 221 1 7 HELIX 2 AA2 LEU A 223 VAL A 227 5 5 HELIX 3 AA3 GLY A 276 HIS A 283 1 8 HELIX 4 AA4 PRO A 305 LEU A 309 5 5 HELIX 5 AA5 LYS B 215 GLY B 222 1 8 HELIX 6 AA6 LEU B 223 VAL B 227 5 5 HELIX 7 AA7 GLY B 276 HIS B 283 1 8 HELIX 8 AA8 PRO B 305 LEU B 309 5 5 HELIX 9 AA9 LYS C 215 CYS C 221 1 7 HELIX 10 AB1 LEU C 223 ARG C 225 5 3 HELIX 11 AB2 GLY C 276 HIS C 283 1 8 HELIX 12 AB3 PRO C 305 LEU C 309 5 5 HELIX 13 AB4 LYS D 215 CYS D 221 1 7 HELIX 14 AB5 LEU D 223 VAL D 227 5 5 HELIX 15 AB6 GLY D 276 HIS D 283 1 8 HELIX 16 AB7 PRO D 305 LEU D 309 5 5 HELIX 17 AB8 LYS E 215 GLY E 222 1 8 HELIX 18 AB9 LEU E 223 ARG E 225 5 3 HELIX 19 AC1 GLY E 276 HIS E 283 1 8 HELIX 20 AC2 PRO E 305 LEU E 309 5 5 HELIX 21 AC3 LYS F 215 GLY F 222 1 8 HELIX 22 AC4 LEU F 223 VAL F 227 5 5 HELIX 23 AC5 GLY F 276 HIS F 283 1 8 SHEET 1 AA1 7 TYR A 190 ILE A 195 0 SHEET 2 AA1 7 VAL A 198 VAL A 204 -1 O VAL A 200 N CYS A 193 SHEET 3 AA1 7 LEU A 273 ILE A 275 1 O ILE A 275 N PHE A 203 SHEET 4 AA1 7 ILE A 212 ASN A 214 -1 N ILE A 212 O ILE A 274 SHEET 5 AA1 7 MET A 257 ILE A 266 1 O TYR A 264 N MET A 213 SHEET 6 AA1 7 ILE A 243 LEU A 254 -1 N VAL A 252 O ILE A 259 SHEET 7 AA1 7 TYR A 190 ILE A 195 -1 N THR A 194 O ASN A 253 SHEET 1 AA2 7 LYS B 185 VAL B 186 0 SHEET 2 AA2 7 ILE A 299 PRO A 302 -1 N ASN A 300 O LYS B 185 SHEET 3 AA2 7 CYS A 293 ILE A 296 -1 N ILE A 296 O ILE A 299 SHEET 4 AA2 7 MET A 286 ASP A 288 -1 N MET A 286 O THR A 295 SHEET 5 AA2 7 MET D 286 ASP D 288 -1 O ILE D 287 N ILE A 287 SHEET 6 AA2 7 CYS D 293 ILE D 296 -1 O THR D 295 N MET D 286 SHEET 7 AA2 7 ILE D 299 PRO D 302 -1 O VAL D 301 N LEU D 294 SHEET 1 AA3 7 TYR B 190 ILE B 195 0 SHEET 2 AA3 7 VAL B 198 VAL B 204 -1 O VAL B 200 N CYS B 193 SHEET 3 AA3 7 LEU B 273 ILE B 275 1 O ILE B 275 N PHE B 203 SHEET 4 AA3 7 ILE B 212 ASN B 214 -1 N ILE B 212 O ILE B 274 SHEET 5 AA3 7 MET B 257 ILE B 266 1 O TYR B 264 N MET B 213 SHEET 6 AA3 7 ILE B 243 LEU B 254 -1 N GLY B 245 O VAL B 265 SHEET 7 AA3 7 TYR B 190 ILE B 195 -1 N THR B 194 O ASN B 253 SHEET 1 AA4 6 ILE B 299 PRO B 302 0 SHEET 2 AA4 6 CYS B 293 ILE B 296 -1 N LEU B 294 O VAL B 301 SHEET 3 AA4 6 MET B 286 ASP B 288 -1 N MET B 286 O THR B 295 SHEET 4 AA4 6 MET C 286 ASP C 288 -1 O ILE C 287 N ILE B 287 SHEET 5 AA4 6 CYS C 293 ILE C 296 -1 O THR C 295 N MET C 286 SHEET 6 AA4 6 ILE C 299 PRO C 302 -1 O VAL C 301 N LEU C 294 SHEET 1 AA5 7 LYS C 185 VAL C 186 0 SHEET 2 AA5 7 ILE E 299 PRO E 302 -1 O ASN E 300 N LYS C 185 SHEET 3 AA5 7 CYS E 293 ILE E 296 -1 N ILE E 296 O ILE E 299 SHEET 4 AA5 7 MET E 286 ASP E 288 -1 N ASP E 288 O CYS E 293 SHEET 5 AA5 7 MET F 286 ASP F 288 -1 O ILE F 287 N ILE E 287 SHEET 6 AA5 7 CYS F 293 ILE F 296 -1 O CYS F 293 N ASP F 288 SHEET 7 AA5 7 ILE F 299 PRO F 302 -1 O VAL F 301 N LEU F 294 SHEET 1 AA6 8 VAL C 227 ASP C 228 0 SHEET 2 AA6 8 GLY C 245 LEU C 254 -1 O ARG C 246 N ASP C 228 SHEET 3 AA6 8 MET C 257 ILE C 266 -1 O ILE C 259 N VAL C 252 SHEET 4 AA6 8 ILE C 212 ASN C 214 1 N MET C 213 O TYR C 264 SHEET 5 AA6 8 LEU C 273 ILE C 275 -1 O ILE C 274 N ILE C 212 SHEET 6 AA6 8 VAL C 198 VAL C 204 1 N PHE C 203 O ILE C 275 SHEET 7 AA6 8 TYR C 190 ILE C 195 -1 N CYS C 193 O VAL C 200 SHEET 8 AA6 8 GLY C 245 LEU C 254 -1 O ASN C 253 N THR C 194 SHEET 1 AA7 7 TYR D 190 ILE D 195 0 SHEET 2 AA7 7 VAL D 198 VAL D 204 -1 O VAL D 200 N CYS D 193 SHEET 3 AA7 7 LEU D 273 ILE D 275 1 O ILE D 275 N PHE D 203 SHEET 4 AA7 7 ILE D 212 ASN D 214 -1 N ILE D 212 O ILE D 274 SHEET 5 AA7 7 MET D 257 ILE D 266 1 O TYR D 264 N MET D 213 SHEET 6 AA7 7 ILE D 243 LEU D 254 -1 N ILE D 247 O PHE D 263 SHEET 7 AA7 7 TYR D 190 ILE D 195 -1 N THR D 194 O ASN D 253 SHEET 1 AA8 8 VAL E 227 ASP E 228 0 SHEET 2 AA8 8 GLY E 245 LEU E 254 -1 O ARG E 246 N ASP E 228 SHEET 3 AA8 8 MET E 257 ILE E 266 -1 O ILE E 259 N VAL E 252 SHEET 4 AA8 8 ILE E 212 ASN E 214 1 N MET E 213 O TYR E 264 SHEET 5 AA8 8 LEU E 273 ILE E 275 -1 O ILE E 274 N ILE E 212 SHEET 6 AA8 8 VAL E 198 VAL E 204 1 N PHE E 203 O LEU E 273 SHEET 7 AA8 8 TYR E 190 ILE E 195 -1 N CYS E 193 O VAL E 200 SHEET 8 AA8 8 GLY E 245 LEU E 254 -1 O ASN E 253 N THR E 194 SHEET 1 AA9 7 TYR F 190 ILE F 195 0 SHEET 2 AA9 7 VAL F 198 VAL F 204 -1 O VAL F 200 N CYS F 193 SHEET 3 AA9 7 LEU F 273 ILE F 275 1 O LEU F 273 N PHE F 203 SHEET 4 AA9 7 ILE F 212 ASN F 214 -1 N ILE F 212 O ILE F 274 SHEET 5 AA9 7 MET F 257 ILE F 266 1 O TYR F 264 N MET F 213 SHEET 6 AA9 7 ILE F 243 LEU F 254 -1 N ILE F 247 O PHE F 263 SHEET 7 AA9 7 TYR F 190 ILE F 195 -1 N THR F 194 O ASN F 253 CRYST1 43.790 56.780 91.400 76.56 84.48 89.99 P 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022836 -0.000004 -0.002269 0.00000 SCALE2 0.000000 0.017612 -0.004229 0.00000 SCALE3 0.000000 0.000000 0.011304 0.00000