HEADER VIRAL PROTEIN 13-NOV-17 5YS6 TITLE STRUCTURE OF THE ECTODOMAIN OF PSEUDORABIES VIRUS GLYCOPROTEN B COMPND MOL_ID: 1; COMPND 2 MOLECULE: PRV GLYCOPROTEN B; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ECTODOMAIN; COMPND 5 SYNONYM: ENVELOPE GLYCOPROTEIN B, GB; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SUID ALPHAHERPESVIRUS 1; SOURCE 3 ORGANISM_COMMON: PSEUDORABIES VIRUS; SOURCE 4 ORGANISM_TAXID: 10345; SOURCE 5 GENE: GB; SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7111 KEYWDS FUSION GLYCOPROTEIN, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR X.L.HU,F.L.YANG REVDAT 2 22-NOV-23 5YS6 1 REMARK REVDAT 1 27-DEC-17 5YS6 0 JRNL AUTH X.D.LI,F.L.YANG,X.L.HU JRNL TITL TWO CLASSES OF PROTECTIVE ANTIBODIES AGAINST PSEUDORABIES JRNL TITL 2 VIRUS VARIANT GLYCOPROTEIN B: IMPLICATIONS FOR VACCINE JRNL TITL 3 DESIGN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.57 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.960 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 18723 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.229 REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.120 REMARK 3 FREE R VALUE TEST SET COUNT : 958 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.5712 - 5.9015 1.00 2555 118 0.1980 0.2010 REMARK 3 2 5.9015 - 4.6876 1.00 2543 133 0.2161 0.2471 REMARK 3 3 4.6876 - 4.0961 1.00 2581 113 0.1984 0.2389 REMARK 3 4 4.0961 - 3.7220 1.00 2515 138 0.2436 0.3016 REMARK 3 5 3.7220 - 3.4555 1.00 2532 151 0.2575 0.3333 REMARK 3 6 3.4555 - 3.2519 1.00 2547 139 0.2873 0.3517 REMARK 3 7 3.2519 - 3.0891 0.99 2492 166 0.3320 0.3746 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.470 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.120 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 4691 REMARK 3 ANGLE : 0.982 6359 REMARK 3 CHIRALITY : 0.039 691 REMARK 3 PLANARITY : 0.004 835 REMARK 3 DIHEDRAL : 16.447 1727 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 93.7403 55.2084 25.0454 REMARK 3 T TENSOR REMARK 3 T11: 0.3091 T22: 0.3724 REMARK 3 T33: 0.4394 T12: -0.0412 REMARK 3 T13: 0.0256 T23: -0.0181 REMARK 3 L TENSOR REMARK 3 L11: 0.3910 L22: 0.3464 REMARK 3 L33: 0.3916 L12: -0.0731 REMARK 3 L13: -0.2566 L23: -0.0637 REMARK 3 S TENSOR REMARK 3 S11: -0.1041 S12: -0.0517 S13: -0.0112 REMARK 3 S21: 0.0800 S22: -0.0189 S23: 0.0354 REMARK 3 S31: 0.0741 S32: 0.0202 S33: -0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5YS6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-NOV-17. REMARK 100 THE DEPOSITION ID IS D_1300005804. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-NOV-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97915 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18750 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.7790 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.21 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: SHELXD REMARK 200 STARTING MODEL: 2GUM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 34% PEG 200, 0.1 M CITRIC ACID, PH REMARK 280 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 50.14400 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 28.95065 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 90.97267 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 50.14400 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 28.95065 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 90.97267 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 50.14400 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 28.95065 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 90.97267 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 57.90130 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 181.94533 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 57.90130 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 181.94533 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 57.90130 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 181.94533 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 33440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 81320 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -170.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 200.57600 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 100.28800 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 173.70391 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 59 REMARK 465 ALA A 60 REMARK 465 VAL A 61 REMARK 465 THR A 62 REMARK 465 ARG A 63 REMARK 465 ALA A 64 REMARK 465 ALA A 65 REMARK 465 SER A 66 REMARK 465 ALA A 67 REMARK 465 SER A 68 REMARK 465 PRO A 69 REMARK 465 ALA A 70 REMARK 465 PRO A 71 REMARK 465 GLY A 72 REMARK 465 THR A 73 REMARK 465 GLY A 74 REMARK 465 ALA A 75 REMARK 465 THR A 76 REMARK 465 PRO A 77 REMARK 465 ASP A 78 REMARK 465 GLY A 79 REMARK 465 PHE A 80 REMARK 465 SER A 81 REMARK 465 ALA A 82 REMARK 465 GLU A 83 REMARK 465 GLU A 84 REMARK 465 SER A 85 REMARK 465 LEU A 86 REMARK 465 GLU A 87 REMARK 465 GLU A 88 REMARK 465 ILE A 89 REMARK 465 ASP A 90 REMARK 465 GLY A 91 REMARK 465 ALA A 92 REMARK 465 VAL A 93 REMARK 465 SER A 94 REMARK 465 PRO A 95 REMARK 465 GLY A 96 REMARK 465 PRO A 97 REMARK 465 SER A 98 REMARK 465 ASP A 99 REMARK 465 ALA A 100 REMARK 465 PRO A 101 REMARK 465 ASP A 102 REMARK 465 GLY A 103 REMARK 465 GLU A 104 REMARK 465 TYR A 105 REMARK 465 GLY A 106 REMARK 465 ASP A 107 REMARK 465 LEU A 108 REMARK 465 ASP A 109 REMARK 465 ALA A 110 REMARK 465 ARG A 111 REMARK 465 THR A 112 REMARK 465 ALA A 113 REMARK 465 VAL A 114 REMARK 465 ARG A 115 REMARK 465 ALA A 116 REMARK 465 ALA A 117 REMARK 465 ALA A 118 REMARK 465 THR A 119 REMARK 465 GLU A 120 REMARK 465 LEU A 473 REMARK 465 ALA A 474 REMARK 465 GLN A 475 REMARK 465 LEU A 476 REMARK 465 TYR A 477 REMARK 465 ALA A 478 REMARK 465 ARG A 479 REMARK 465 GLU A 480 REMARK 465 LEU A 481 REMARK 465 GLU A 482 REMARK 465 ARG A 483 REMARK 465 LEU A 484 REMARK 465 GLY A 485 REMARK 465 LEU A 486 REMARK 465 ALA A 487 REMARK 465 GLY A 488 REMARK 465 VAL A 489 REMARK 465 VAL A 490 REMARK 465 GLY A 491 REMARK 465 PRO A 492 REMARK 465 ALA A 493 REMARK 465 SER A 494 REMARK 465 PRO A 495 REMARK 465 ALA A 496 REMARK 465 ALA A 497 REMARK 465 ALA A 498 REMARK 465 ARG A 499 REMARK 465 ARG A 500 REMARK 465 ALA A 501 REMARK 465 ARG A 502 REMARK 465 ARG A 503 REMARK 465 SER A 504 REMARK 465 PRO A 505 REMARK 465 GLY A 506 REMARK 465 PRO A 507 REMARK 465 ALA A 508 REMARK 465 GLY A 509 REMARK 465 THR A 510 REMARK 465 PRO A 511 REMARK 465 GLU A 512 REMARK 465 PRO A 513 REMARK 465 PRO A 514 REMARK 465 ALA A 515 REMARK 465 VAL A 516 REMARK 465 ASN A 517 REMARK 465 GLY A 518 REMARK 465 THR A 519 REMARK 465 PHE A 740 REMARK 465 TYR A 741 REMARK 465 ASP A 742 REMARK 465 ILE A 743 REMARK 465 ASP A 744 REMARK 465 ARG A 745 REMARK 465 VAL A 746 REMARK 465 VAL A 747 REMARK 465 LYS A 748 REMARK 465 VAL A 749 REMARK 465 ASP A 750 REMARK 465 HIS A 751 REMARK 465 ASN A 752 REMARK 465 HIS A 753 REMARK 465 HIS A 754 REMARK 465 HIS A 755 REMARK 465 HIS A 756 REMARK 465 HIS A 757 REMARK 465 HIS A 758 REMARK 465 HIS A 759 REMARK 465 HIS A 760 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ALA A 318 N GLY A 320 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD1 ASN A 561 NH2 ARG A 694 3775 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 238 -163.43 -107.02 REMARK 500 PRO A 240 108.50 -58.91 REMARK 500 PRO A 247 170.66 -56.92 REMARK 500 ARG A 249 -145.36 -67.85 REMARK 500 ASN A 251 -140.19 89.00 REMARK 500 ALA A 252 78.67 56.59 REMARK 500 LEU A 253 59.78 36.86 REMARK 500 ALA A 270 91.32 55.53 REMARK 500 PHE A 273 -157.21 -125.36 REMARK 500 SER A 297 149.87 -178.77 REMARK 500 ARG A 315 -160.11 -69.82 REMARK 500 GLU A 316 -83.33 -43.17 REMARK 500 HIS A 319 -19.05 -25.27 REMARK 500 PRO A 338 87.07 -67.35 REMARK 500 ASP A 342 -95.75 -116.34 REMARK 500 LEU A 345 159.60 168.95 REMARK 500 ALA A 347 -107.78 -115.54 REMARK 500 GLU A 349 118.53 69.35 REMARK 500 GLU A 385 46.22 -105.66 REMARK 500 ARG A 392 172.45 64.33 REMARK 500 ASP A 393 73.19 -25.77 REMARK 500 LEU A 421 72.70 61.09 REMARK 500 VAL A 425 -71.53 -57.20 REMARK 500 ARG A 427 -80.60 -46.51 REMARK 500 ARG A 440 -30.50 -141.69 REMARK 500 ASN A 442 -2.22 -59.88 REMARK 500 ASP A 450 -72.79 -102.37 REMARK 500 ASN A 574 77.71 -150.50 REMARK 500 LEU A 592 67.53 -102.76 REMARK 500 PRO A 627 152.85 -44.65 REMARK 500 ASN A 634 -139.47 -100.63 REMARK 500 THR A 636 49.13 -164.86 REMARK 500 ILE A 651 -74.24 -119.26 REMARK 500 VAL A 682 -75.16 -133.10 REMARK 500 VAL A 687 54.97 -149.86 REMARK 500 LEU A 697 88.33 -150.39 REMARK 500 ARG A 732 -79.83 -76.05 REMARK 500 ASN A 733 95.71 -49.10 REMARK 500 GLN A 734 -50.97 167.43 REMARK 500 LEU A 735 -7.93 -45.12 REMARK 500 HIS A 736 18.27 -54.26 REMARK 500 LEU A 738 -143.96 -178.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU A 250 ASN A 251 136.29 REMARK 500 HIS A 736 ALA A 737 136.90 REMARK 500 LEU A 738 LYS A 739 142.64 REMARK 500 REMARK 500 REMARK: NULL DBREF1 5YS6 A 59 752 UNP A0A1Q0AKY3_9ALPH DBREF2 5YS6 A A0A1Q0AKY3 59 752 SEQADV 5YS6 HIS A 753 UNP A0A1Q0AKY EXPRESSION TAG SEQADV 5YS6 HIS A 754 UNP A0A1Q0AKY EXPRESSION TAG SEQADV 5YS6 HIS A 755 UNP A0A1Q0AKY EXPRESSION TAG SEQADV 5YS6 HIS A 756 UNP A0A1Q0AKY EXPRESSION TAG SEQADV 5YS6 HIS A 757 UNP A0A1Q0AKY EXPRESSION TAG SEQADV 5YS6 HIS A 758 UNP A0A1Q0AKY EXPRESSION TAG SEQADV 5YS6 HIS A 759 UNP A0A1Q0AKY EXPRESSION TAG SEQADV 5YS6 HIS A 760 UNP A0A1Q0AKY EXPRESSION TAG SEQRES 1 A 702 ALA ALA VAL THR ARG ALA ALA SER ALA SER PRO ALA PRO SEQRES 2 A 702 GLY THR GLY ALA THR PRO ASP GLY PHE SER ALA GLU GLU SEQRES 3 A 702 SER LEU GLU GLU ILE ASP GLY ALA VAL SER PRO GLY PRO SEQRES 4 A 702 SER ASP ALA PRO ASP GLY GLU TYR GLY ASP LEU ASP ALA SEQRES 5 A 702 ARG THR ALA VAL ARG ALA ALA ALA THR GLU ARG ASP ARG SEQRES 6 A 702 PHE TYR VAL CYS PRO PRO PRO SER GLY SER THR VAL VAL SEQRES 7 A 702 ARG LEU GLU PRO GLU GLN ALA CYS PRO GLU TYR SER GLN SEQRES 8 A 702 GLY ARG ASN PHE THR GLU GLY ILE ALA VAL LEU PHE LYS SEQRES 9 A 702 GLU ASN ILE ALA PRO HIS LYS PHE LYS ALA HIS ILE TYR SEQRES 10 A 702 TYR LYS ASN VAL ILE VAL THR THR VAL TRP SER GLY SER SEQRES 11 A 702 THR TYR ALA ALA ILE THR ASN ARG PHE THR ASP ARG VAL SEQRES 12 A 702 PRO VAL PRO VAL GLN GLU ILE THR ASP VAL ILE ASP ARG SEQRES 13 A 702 ARG GLY LYS CYS VAL SER LYS ALA GLU TYR VAL ARG ASN SEQRES 14 A 702 ASN HIS LYS VAL THR ALA PHE ASP ARG ASP GLU ASN PRO SEQRES 15 A 702 VAL GLU VAL ASP LEU ARG PRO SER ARG LEU ASN ALA LEU SEQRES 16 A 702 GLY THR ARG GLY TRP HIS THR THR ASN ASP THR TYR THR SEQRES 17 A 702 LYS ILE GLY ALA ALA GLY PHE TYR HIS THR GLY THR SER SEQRES 18 A 702 VAL ASN CYS ILE VAL GLU GLU VAL GLU ALA ARG SER VAL SEQRES 19 A 702 TYR PRO TYR ASP SER PHE ALA LEU SER THR GLY ASP ILE SEQRES 20 A 702 VAL TYR MET SER PRO PHE TYR GLY LEU ARG GLU GLY ALA SEQRES 21 A 702 HIS GLY GLU HIS ILE GLY TYR ALA PRO GLY ARG PHE GLN SEQRES 22 A 702 GLN VAL GLU HIS TYR TYR PRO ILE ASP LEU ASP SER ARG SEQRES 23 A 702 LEU ARG ALA SER GLU SER VAL THR ARG ASN PHE LEU ARG SEQRES 24 A 702 THR PRO HIS PHE THR VAL ALA TRP ASP TRP ALA PRO LYS SEQRES 25 A 702 THR ARG ARG VAL CYS SER LEU ALA LYS TRP ARG GLU ALA SEQRES 26 A 702 GLU GLU MET ILE ARG ASP GLU THR ARG ASP GLY SER PHE SEQRES 27 A 702 ARG PHE THR SER ARG ALA LEU GLY ALA SER PHE VAL SER SEQRES 28 A 702 ASP VAL THR GLN LEU ASP LEU GLN ARG VAL HIS LEU GLY SEQRES 29 A 702 ASP CYS VAL LEU ARG GLU ALA SER GLU ALA ILE ASP ALA SEQRES 30 A 702 ILE TYR ARG ARG ARG TYR ASN ASN THR HIS VAL LEU ALA SEQRES 31 A 702 GLY ASP LYS PRO GLU VAL TYR LEU ALA ARG GLY GLY PHE SEQRES 32 A 702 VAL VAL ALA PHE ARG PRO LEU ILE SER ASN GLU LEU ALA SEQRES 33 A 702 GLN LEU TYR ALA ARG GLU LEU GLU ARG LEU GLY LEU ALA SEQRES 34 A 702 GLY VAL VAL GLY PRO ALA SER PRO ALA ALA ALA ARG ARG SEQRES 35 A 702 ALA ARG ARG SER PRO GLY PRO ALA GLY THR PRO GLU PRO SEQRES 36 A 702 PRO ALA VAL ASN GLY THR GLY HIS LEU ARG ILE THR THR SEQRES 37 A 702 GLY SER ALA GLU PHE ALA ARG LEU GLN PHE THR TYR ASP SEQRES 38 A 702 HIS ILE GLN ALA HIS VAL ASN ASP MET LEU SER ARG ILE SEQRES 39 A 702 ALA ALA ALA TRP CYS GLU LEU GLN ASN LYS ASP ARG THR SEQRES 40 A 702 LEU TRP GLY GLU MET SER ARG LEU ASN PRO SER ALA VAL SEQRES 41 A 702 ALA THR ALA ALA LEU GLY GLN ARG VAL SER ALA ARG MET SEQRES 42 A 702 LEU GLY ASP VAL MET ALA ILE SER ARG CYS VAL GLU VAL SEQRES 43 A 702 ARG GLY GLY VAL TYR VAL GLN ASN SER MET ARG VAL PRO SEQRES 44 A 702 GLY GLU ARG GLY THR CYS TYR SER ARG PRO LEU VAL THR SEQRES 45 A 702 PHE GLU HIS ASN GLY THR GLY VAL ILE GLU GLY GLN LEU SEQRES 46 A 702 GLY ASP ASP ASN GLU LEU LEU ILE SER ARG ASP LEU ILE SEQRES 47 A 702 GLU PRO CYS THR GLY ASN HIS ARG ARG TYR PHE LYS LEU SEQRES 48 A 702 GLY GLY GLY TYR VAL TYR TYR GLU ASP TYR SER TYR VAL SEQRES 49 A 702 ARG MET VAL GLU VAL PRO GLU THR ILE SER THR ARG VAL SEQRES 50 A 702 THR LEU ASN LEU THR LEU LEU GLU ASP ARG GLU PHE LEU SEQRES 51 A 702 PRO LEU GLU VAL TYR THR ARG GLU GLU LEU ALA ASP THR SEQRES 52 A 702 GLY LEU LEU ASP TYR SER GLU ILE GLN ARG ARG ASN GLN SEQRES 53 A 702 LEU HIS ALA LEU LYS PHE TYR ASP ILE ASP ARG VAL VAL SEQRES 54 A 702 LYS VAL ASP HIS ASN HIS HIS HIS HIS HIS HIS HIS HIS HELIX 1 AA1 PRO A 204 VAL A 211 1 8 HELIX 2 AA2 PHE A 234 GLU A 238 5 5 HELIX 3 AA3 PRO A 369 VAL A 374 1 6 HELIX 4 AA4 ASP A 415 VAL A 419 5 5 HELIX 5 AA5 ASP A 423 TYR A 441 1 19 HELIX 6 AA6 ALA A 529 ASN A 574 1 46 HELIX 7 AA7 ASN A 574 GLY A 584 1 11 HELIX 8 AA8 THR A 714 ASP A 720 1 7 HELIX 9 AA9 ASP A 725 ASN A 733 1 9 SHEET 1 AA1 2 PHE A 124 VAL A 126 0 SHEET 2 AA1 2 VAL A 602 VAL A 604 -1 O VAL A 602 N VAL A 126 SHEET 1 AA2 3 VAL A 135 VAL A 136 0 SHEET 2 AA2 3 MET A 596 SER A 599 -1 O MET A 596 N VAL A 136 SHEET 3 AA2 3 SER A 588 MET A 591 -1 N SER A 588 O SER A 599 SHEET 1 AA3 6 ALA A 405 SER A 409 0 SHEET 2 AA3 6 PHE A 396 SER A 400 -1 N PHE A 398 O PHE A 407 SHEET 3 AA3 6 LEU A 377 ARG A 388 -1 N ILE A 387 O THR A 399 SHEET 4 AA3 6 THR A 154 GLU A 163 -1 N LEU A 160 O TRP A 380 SHEET 5 AA3 6 PHE A 461 SER A 470 -1 O ARG A 466 N ILE A 157 SHEET 6 AA3 6 HIS A 445 LEU A 447 -1 N VAL A 446 O ILE A 469 SHEET 1 AA4 6 ALA A 405 SER A 409 0 SHEET 2 AA4 6 PHE A 396 SER A 400 -1 N PHE A 398 O PHE A 407 SHEET 3 AA4 6 LEU A 377 ARG A 388 -1 N ILE A 387 O THR A 399 SHEET 4 AA4 6 THR A 154 GLU A 163 -1 N LEU A 160 O TRP A 380 SHEET 5 AA4 6 PHE A 461 SER A 470 -1 O ARG A 466 N ILE A 157 SHEET 6 AA4 6 GLU A 453 ALA A 457 -1 N TYR A 455 O VAL A 463 SHEET 1 AA5 5 ALA A 191 PRO A 202 0 SHEET 2 AA5 5 HIS A 168 SER A 186 -1 N LYS A 177 O VAL A 201 SHEET 3 AA5 5 TYR A 274 SER A 291 -1 O SER A 291 N HIS A 168 SHEET 4 AA5 5 PHE A 298 LEU A 300 -1 O ALA A 299 N ARG A 290 SHEET 5 AA5 5 ILE A 305 VAL A 306 -1 O VAL A 306 N PHE A 298 SHEET 1 AA6 7 ARG A 246 PRO A 247 0 SHEET 2 AA6 7 GLY A 257 HIS A 259 -1 O HIS A 259 N ARG A 246 SHEET 3 AA6 7 TYR A 274 SER A 291 -1 O VAL A 284 N TRP A 258 SHEET 4 AA6 7 HIS A 168 SER A 186 -1 N HIS A 168 O SER A 291 SHEET 5 AA6 7 THR A 362 ASP A 366 -1 O THR A 362 N TYR A 175 SHEET 6 AA6 7 VAL A 351 ARG A 357 -1 N ASN A 354 O TRP A 365 SHEET 7 AA6 7 PHE A 330 TYR A 336 -1 N TYR A 336 O VAL A 351 SHEET 1 AA7 2 LYS A 217 VAL A 219 0 SHEET 2 AA7 2 GLU A 242 ASP A 244 -1 O VAL A 243 N CYS A 218 SHEET 1 AA8 2 TYR A 224 VAL A 225 0 SHEET 2 AA8 2 LYS A 230 VAL A 231 -1 O VAL A 231 N TYR A 224 SHEET 1 AA9 3 VAL A 608 VAL A 610 0 SHEET 2 AA9 3 LEU A 628 PHE A 631 -1 O THR A 630 N TYR A 609 SHEET 3 AA9 3 ILE A 639 GLN A 642 -1 O GLY A 641 N VAL A 629 SHEET 1 AB1 2 THR A 622 TYR A 624 0 SHEET 2 AB1 2 ILE A 656 PRO A 658 -1 O GLU A 657 N CYS A 623 SHEET 1 AB2 3 ARG A 664 LEU A 669 0 SHEET 2 AB2 3 GLY A 672 GLU A 677 -1 O GLY A 672 N LEU A 669 SHEET 3 AB2 3 TYR A 681 VAL A 685 -1 O ARG A 683 N TYR A 675 SSBOND 1 CYS A 127 CYS A 601 1555 1555 2.04 SSBOND 2 CYS A 144 CYS A 557 1555 1555 2.05 SSBOND 3 CYS A 218 CYS A 282 1555 1555 2.04 SSBOND 4 CYS A 375 CYS A 424 1555 1555 2.04 SSBOND 5 CYS A 623 CYS A 659 1555 1555 2.04 CISPEP 1 TYR A 293 PRO A 294 0 0.65 CISPEP 2 ARG A 346 ALA A 347 0 -22.26 CRYST1 100.288 100.288 272.918 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009971 0.005757 0.000000 0.00000 SCALE2 0.000000 0.011514 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003664 0.00000