HEADER OXIDOREDUCTASE 15-NOV-17 5YSW TITLE CRYSTAL STRUCTURE ANALYSIS OF RIF16 IN COMPLEX WITH R-L COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME P450; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AMYCOLATOPSIS MEDITERRANEI (STRAIN U-32); SOURCE 3 ORGANISM_TAXID: 749927; SOURCE 4 STRAIN: U-32; SOURCE 5 GENE: AMED_0653; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS CYTOCHROME P450, RIFAMYCIN, METAL BINDING PROTEIN, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR F.W.LI,F.F.QI,Y.L.XIAO,G.P.ZHAO,S.Y.LI REVDAT 2 22-NOV-23 5YSW 1 REMARK REVDAT 1 04-JUL-18 5YSW 0 JRNL AUTH F.QI,C.LEI,F.LI,X.ZHANG,J.WANG,W.ZHANG,Z.FAN,W.LI,G.L.TANG, JRNL AUTH 2 Y.XIAO,G.ZHAO,S.LI JRNL TITL DECIPHERING THE LATE STEPS OF RIFAMYCIN BIOSYNTHESIS. JRNL REF NAT COMMUN V. 9 2342 2018 JRNL REFN ESSN 2041-1723 JRNL PMID 29904078 JRNL DOI 10.1038/S41467-018-04772-X REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.38 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 3 NUMBER OF REFLECTIONS : 11248 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.271 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 580 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 717 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 82.31 REMARK 3 BIN R VALUE (WORKING SET) : 0.2170 REMARK 3 BIN FREE R VALUE SET COUNT : 37 REMARK 3 BIN FREE R VALUE : 0.2960 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2868 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 97 REMARK 3 SOLVENT ATOMS : 64 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.33000 REMARK 3 B22 (A**2) : -0.59000 REMARK 3 B33 (A**2) : 0.24000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.19000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.377 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.261 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.814 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.919 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.866 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3038 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2839 ; 0.005 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4159 ; 1.704 ; 2.014 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6484 ; 0.924 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 370 ; 6.278 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 134 ;32.690 ;22.687 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 449 ;22.456 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 31 ;26.466 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 464 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3450 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 692 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 5YSW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-DEC-17. REMARK 100 THE DEPOSITION ID IS D_1300005860. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-NOV-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976 REMARK 200 MONOCHROMATOR : NI FILTER REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : SIEMENS-NICOLET REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12806 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.550 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 5.800 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 5.70 REMARK 200 R MERGE FOR SHELL (I) : 0.55500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: 4OQS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MAGNESIUM CHLORIDE HEXAHYDRATE, PEG REMARK 280 4000, PH 8.5, VAPOR DIFFUSION, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 35.35450 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -20 REMARK 465 GLY A -19 REMARK 465 SER A -18 REMARK 465 SER A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 SER A -10 REMARK 465 SER A -9 REMARK 465 GLY A -8 REMARK 465 LEU A -7 REMARK 465 VAL A -6 REMARK 465 PRO A -5 REMARK 465 ARG A -4 REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 HIS A -1 REMARK 465 MET A 0 REMARK 465 VAL A 1 REMARK 465 THR A 2 REMARK 465 THR A 3 REMARK 465 LYS A 4 REMARK 465 VAL A 5 REMARK 465 THR A 6 REMARK 465 GLU A 7 REMARK 465 ASN A 8 REMARK 465 ALA A 9 REMARK 465 PRO A 10 REMARK 465 SER A 11 REMARK 465 THR A 12 REMARK 465 GLU A 13 REMARK 465 SER A 14 REMARK 465 LEU A 15 REMARK 465 ARG A 16 REMARK 465 SER A 17 REMARK 465 PRO A 18 REMARK 465 LEU A 19 REMARK 465 ALA A 52 REMARK 465 GLY A 53 REMARK 465 HIS A 82 REMARK 465 PRO A 83 REMARK 465 TRP A 84 REMARK 465 PHE A 85 REMARK 465 LYS A 86 REMARK 465 GLU A 87 REMARK 465 LEU A 88 REMARK 465 SER A 89 REMARK 465 PRO A 90 REMARK 465 GLU A 91 REMARK 465 PHE A 92 REMARK 465 ARG A 93 REMARK 465 GLU A 94 REMARK 465 ARG A 95 REMARK 465 LEU A 96 REMARK 465 ARG A 97 REMARK 465 ASP A 98 REMARK 465 ASP A 99 REMARK 465 LYS A 100 REMARK 465 ALA A 101 REMARK 465 VAL A 202 REMARK 465 LYS A 203 REMARK 465 ASN A 204 REMARK 465 ALA A 419 REMARK 465 PRO A 420 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 27 CG CD OE1 OE2 REMARK 470 ASP A 54 CG OD1 OD2 REMARK 470 ARG A 78 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 187 CG CD NE CZ NH1 NH2 REMARK 470 MET A 194 CG SD CE REMARK 470 ASN A 195 CG OD1 ND2 REMARK 470 ARG A 288 CG CD NE CZ NH1 NH2 REMARK 470 PHE A 317 CG CD1 CD2 CE1 CE2 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASN A 304 O LEU A 406 1.38 REMARK 500 O TYR A 299 NH1 ARG A 337 1.72 REMARK 500 O ASP A 259 OG SER A 263 1.98 REMARK 500 OE2 GLU A 294 NH2 ARG A 373 2.01 REMARK 500 O GLN A 124 NH1 ARG A 129 2.10 REMARK 500 OD1 ASP A 291 CG ARG A 353 2.12 REMARK 500 OD2 ASP A 146 NH2 ARG A 386 2.12 REMARK 500 N THR A 242 OE1 GLU A 245 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 161 -54.56 -135.36 REMARK 500 ALA A 190 58.39 -119.52 REMARK 500 MET A 194 -75.11 -140.08 REMARK 500 ALA A 199 106.91 41.98 REMARK 500 GLU A 200 164.40 -48.93 REMARK 500 ALA A 224 -159.49 -99.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL A 198 ALA A 199 -32.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 664 DISTANCE = 8.96 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 501 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 366 SG REMARK 620 2 HEM A 501 NA 111.0 REMARK 620 3 HEM A 501 NB 85.6 89.1 REMARK 620 4 HEM A 501 NC 69.5 178.1 89.2 REMARK 620 5 HEM A 501 ND 92.7 91.0 178.2 90.7 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 9LF A 502 DBREF1 5YSW A 2 420 UNP A0A0H3CVZ6_AMYMU DBREF2 5YSW A A0A0H3CVZ6 2 420 SEQADV 5YSW MET A -20 UNP A0A0H3CVZ EXPRESSION TAG SEQADV 5YSW GLY A -19 UNP A0A0H3CVZ EXPRESSION TAG SEQADV 5YSW SER A -18 UNP A0A0H3CVZ EXPRESSION TAG SEQADV 5YSW SER A -17 UNP A0A0H3CVZ EXPRESSION TAG SEQADV 5YSW HIS A -16 UNP A0A0H3CVZ EXPRESSION TAG SEQADV 5YSW HIS A -15 UNP A0A0H3CVZ EXPRESSION TAG SEQADV 5YSW HIS A -14 UNP A0A0H3CVZ EXPRESSION TAG SEQADV 5YSW HIS A -13 UNP A0A0H3CVZ EXPRESSION TAG SEQADV 5YSW HIS A -12 UNP A0A0H3CVZ EXPRESSION TAG SEQADV 5YSW HIS A -11 UNP A0A0H3CVZ EXPRESSION TAG SEQADV 5YSW SER A -10 UNP A0A0H3CVZ EXPRESSION TAG SEQADV 5YSW SER A -9 UNP A0A0H3CVZ EXPRESSION TAG SEQADV 5YSW GLY A -8 UNP A0A0H3CVZ EXPRESSION TAG SEQADV 5YSW LEU A -7 UNP A0A0H3CVZ EXPRESSION TAG SEQADV 5YSW VAL A -6 UNP A0A0H3CVZ EXPRESSION TAG SEQADV 5YSW PRO A -5 UNP A0A0H3CVZ EXPRESSION TAG SEQADV 5YSW ARG A -4 UNP A0A0H3CVZ EXPRESSION TAG SEQADV 5YSW GLY A -3 UNP A0A0H3CVZ EXPRESSION TAG SEQADV 5YSW SER A -2 UNP A0A0H3CVZ EXPRESSION TAG SEQADV 5YSW HIS A -1 UNP A0A0H3CVZ EXPRESSION TAG SEQADV 5YSW MET A 0 UNP A0A0H3CVZ EXPRESSION TAG SEQADV 5YSW VAL A 1 UNP A0A0H3CVZ EXPRESSION TAG SEQRES 1 A 441 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 441 LEU VAL PRO ARG GLY SER HIS MET VAL THR THR LYS VAL SEQRES 3 A 441 THR GLU ASN ALA PRO SER THR GLU SER LEU ARG SER PRO SEQRES 4 A 441 LEU PRO PRO GLU PHE VAL ARG ARG GLU ASP PRO PHE HIS SEQRES 5 A 441 VAL PRO PRO ALA LEU VAL ALA VAL SER GLU ARG GLY PRO SEQRES 6 A 441 VAL ALA ARG ALA THR LEU ALA ALA GLY ASP PRO PHE TRP SEQRES 7 A 441 LEU VAL SER GLY TYR GLU GLU ALA ARG ALA VAL LEU SER SEQRES 8 A 441 ASP PRO ARG PHE SER SER ASP ARG PHE GLN TYR HIS PRO SEQRES 9 A 441 TRP PHE LYS GLU LEU SER PRO GLU PHE ARG GLU ARG LEU SEQRES 10 A 441 ARG ASP ASP LYS ALA ARG ALA GLY SER PHE ILE ASN MET SEQRES 11 A 441 ASP PRO PRO GLU HIS THR ARG TYR ARG LYS LEU LEU THR SEQRES 12 A 441 GLY GLN PHE THR VAL ARG ARG ILE ARG GLU LEU GLY ALA SEQRES 13 A 441 ARG ILE ASP GLU ILE VAL ALA GLY ARG VAL ASP ALA MET SEQRES 14 A 441 LEU ALA GLY GLY THR THR ALA ASP LEU MET THR GLU PHE SEQRES 15 A 441 ALA PHE PRO ALA PRO SER LEU MET ILE CYS GLU LEU LEU SEQRES 16 A 441 GLY VAL ARG TYR GLU ASP ARG ALA GLU PHE GLN GLN ARG SEQRES 17 A 441 ALA SER ALA LEU LEU GLN MET ASN ALA PRO VAL ALA GLU SEQRES 18 A 441 ALA VAL LYS ASN ALA ASP ALA LEU ARG ALA PHE MET GLN SEQRES 19 A 441 ALA LEU VAL THR ASP LYS ARG ALA ASN PRO ALA GLY ASP SEQRES 20 A 441 ILE ILE SER GLY LEU ILE HIS HIS ALA GLY ALA ASP PRO SEQRES 21 A 441 ALA LEU THR ASP ASP GLU LEU ILE ASN ILE ALA ASN LEU SEQRES 22 A 441 LEU LEU ILE ALA GLY TYR ASP THR THR ALA SER MET LEU SEQRES 23 A 441 GLY LEU GLY ILE PHE VAL LEU LEU GLN ARG PRO ALA GLN SEQRES 24 A 441 LEU ALA THR LEU ARG ASP ASP PRO SER ARG ILE ALA ASP SEQRES 25 A 441 ALA VAL GLU GLU LEU LEU ARG TYR LEU SER VAL VAL ASN SEQRES 26 A 441 PRO GLY ILE PHE ARG PHE ALA LYS GLU ASP LEU GLU PHE SEQRES 27 A 441 ALA GLY GLU HIS ILE PRO ALA GLY SER THR VAL VAL VAL SEQRES 28 A 441 SER VAL VAL ALA THR ASN ARG ASP ALA ARG HIS TRP PRO SEQRES 29 A 441 ASP PRO ASP LEU ASP LEU THR ARG PRO ARG GLY PRO HIS SEQRES 30 A 441 LEU ALA PHE GLY HIS GLY VAL HIS GLN CYS LEU GLY GLN SEQRES 31 A 441 GLN LEU ALA ARG MET GLU MET GLN ALA GLY TYR ALA GLU SEQRES 32 A 441 LEU LEU ARG ARG LEU PRO ASN VAL ARG LEU ALA VAL PRO SEQRES 33 A 441 PRO GLU GLU VAL PRO LEU ARG ASN ASP MET LEU THR TYR SEQRES 34 A 441 GLY VAL HIS SER LEU PRO ILE ALA TRP ASP ALA PRO HET HEM A 501 43 HET 9LF A 502 54 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM 9LF (2S,12E,14E,16S,17S,18R,19R,20R,21S,22R,23S,24E)-21- HETNAM 2 9LF (ACETYLOXY)-5,6,17,19-TETRAHYDROXY-23-METHOXY-2,4,12, HETNAM 3 9LF 16,18,20,22-HEPTAMETHYL-1,11-DIOXO-1,2-DIHYDRO-2,7- HETNAM 4 9LF (EPOXYPENTADECA[1,11,13]TRIENOIMINO)NAPHTHO[2,1- HETNAM 5 9LF B]FURAN-9-YL HYDROXYACETATE HETSYN HEM HEME HETSYN 9LF RIFAMYCIN L FORMUL 2 HEM C34 H32 FE N4 O4 FORMUL 3 9LF C39 H49 N O14 FORMUL 4 HOH *64(H2 O) HELIX 1 AA1 PRO A 20 ARG A 25 1 6 HELIX 2 AA2 PRO A 33 GLY A 43 1 11 HELIX 3 AA3 GLY A 61 SER A 70 1 10 HELIX 4 AA4 SER A 105 MET A 109 5 5 HELIX 5 AA5 PRO A 112 PHE A 125 1 14 HELIX 6 AA6 THR A 126 GLY A 152 1 27 HELIX 7 AA7 LEU A 157 PHE A 161 1 5 HELIX 8 AA8 PHE A 163 LEU A 174 1 12 HELIX 9 AA9 ARG A 177 GLU A 179 5 3 HELIX 10 AB1 ASP A 180 ALA A 188 1 9 HELIX 11 AB2 ASP A 206 ASN A 222 1 17 HELIX 12 AB3 ASP A 226 HIS A 234 1 9 HELIX 13 AB4 THR A 242 ARG A 275 1 34 HELIX 14 AB5 ARG A 275 ASP A 285 1 11 HELIX 15 AB6 ARG A 288 SER A 301 1 14 HELIX 16 AB7 SER A 331 ASN A 336 1 6 HELIX 17 AB8 HIS A 361 GLN A 365 5 5 HELIX 18 AB9 GLY A 368 LEU A 387 1 20 HELIX 19 AC1 PRO A 395 VAL A 399 5 5 SHEET 1 AA1 5 VAL A 45 THR A 49 0 SHEET 2 AA1 5 PRO A 55 VAL A 59 -1 O PHE A 56 N ALA A 48 SHEET 3 AA1 5 THR A 327 VAL A 330 1 O VAL A 329 N TRP A 57 SHEET 4 AA1 5 ILE A 307 ALA A 311 -1 N ARG A 309 O VAL A 328 SHEET 5 AA1 5 PHE A 74 SER A 75 -1 N SER A 75 O PHE A 310 SHEET 1 AA2 3 THR A 154 ASP A 156 0 SHEET 2 AA2 3 PRO A 414 ALA A 416 -1 O ILE A 415 N ALA A 155 SHEET 3 AA2 3 ARG A 391 LEU A 392 -1 N ARG A 391 O ALA A 416 SHEET 1 AA3 2 LEU A 315 PHE A 317 0 SHEET 2 AA3 2 GLU A 320 ILE A 322 -1 O ILE A 322 N LEU A 315 SHEET 1 AA4 2 LEU A 401 ARG A 402 0 SHEET 2 AA4 2 GLY A 409 VAL A 410 -1 O GLY A 409 N ARG A 402 LINK SG CYS A 366 FE HEM A 501 1555 1555 2.44 CISPEP 1 PRO A 111 PRO A 112 0 11.34 CISPEP 2 LEU A 192 GLN A 193 0 2.50 CISPEP 3 GLN A 193 MET A 194 0 8.87 CISPEP 4 PRO A 197 VAL A 198 0 -3.64 CISPEP 5 ASP A 238 PRO A 239 0 -2.04 CISPEP 6 ASN A 304 PRO A 305 0 12.76 SITE 1 AC1 21 PHE A 106 ILE A 107 HIS A 114 ARG A 118 SITE 2 AC1 21 LEU A 253 ALA A 256 GLY A 257 THR A 260 SITE 3 AC1 21 THR A 261 MET A 264 ILE A 307 ARG A 309 SITE 4 AC1 21 ALA A 358 PHE A 359 GLY A 360 HIS A 364 SITE 5 AC1 21 CYS A 366 GLY A 368 ALA A 372 9LF A 502 SITE 6 AC1 21 HOH A 608 SITE 1 AC2 8 ILE A 107 ASN A 108 ASN A 195 ALA A 196 SITE 2 AC2 8 PHE A 308 ARG A 309 LEU A 406 HEM A 501 CRYST1 35.082 70.709 80.975 90.00 94.00 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.028505 0.000000 0.001994 0.00000 SCALE2 0.000000 0.014142 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012380 0.00000