HEADER VIRAL PROTEIN 17-NOV-17 5YT9 TITLE CRYSTAL STRUCTURE OF H5 HEMAGGLUTININ G228S MUTANT FROM TITLE 2 A/CHICKEN/TAIWAN/0502/2012 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEMAGGLUTININ; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS SOURCE 3 (A/CHICKEN/TAIWAN/0502/2012(H5N2)); SOURCE 4 ORGANISM_COMMON: A/CHICKEN/TAIWAN/0502/2012(H5N2); SOURCE 5 ORGANISM_TAXID: 1490024; SOURCE 6 GENE: HA; SOURCE 7 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: SF21; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: UNIDENTIFIED BACULOVIRUS KEYWDS INFLUENZA VIRUS, H5N2, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.H.LIN,M.S.LEE,W.G.WU,J.S.LIU REVDAT 3 22-NOV-23 5YT9 1 HETSYN REVDAT 2 29-JUL-20 5YT9 1 COMPND REMARK HETNAM LINK REVDAT 2 2 1 SITE REVDAT 1 21-NOV-18 5YT9 0 JRNL AUTH T.H.LIN,M.S.LEE,W.G.WU,J.S.LIU JRNL TITL CRYSTAL STRUCTURE OF H5 HEMAGGLUTININ FROM JRNL TITL 2 A/CHICKEN/TAIWAN/0502/2012 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.77 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.77 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.83 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 19683 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.218 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.272 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.210 REMARK 3 FREE R VALUE TEST SET COUNT : 1025 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.8357 - 5.2823 1.00 2775 175 0.2111 0.2667 REMARK 3 2 5.2823 - 4.1964 1.00 2683 156 0.1831 0.2144 REMARK 3 3 4.1964 - 3.6670 1.00 2656 148 0.2021 0.2584 REMARK 3 4 3.6670 - 3.3323 1.00 2640 133 0.2196 0.2991 REMARK 3 5 3.3323 - 3.0937 1.00 2657 135 0.2497 0.3382 REMARK 3 6 3.0937 - 2.9114 1.00 2631 143 0.2777 0.3724 REMARK 3 7 2.9114 - 2.7657 1.00 2616 135 0.2707 0.3464 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.400 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.240 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 4064 REMARK 3 ANGLE : 1.077 5500 REMARK 3 CHIRALITY : 0.059 586 REMARK 3 PLANARITY : 0.008 716 REMARK 3 DIHEDRAL : 11.045 2428 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 120.8483 -15.0571 61.5686 REMARK 3 T TENSOR REMARK 3 T11: 0.4767 T22: 0.3459 REMARK 3 T33: 0.4389 T12: -0.0121 REMARK 3 T13: -0.0137 T23: 0.0655 REMARK 3 L TENSOR REMARK 3 L11: 0.9215 L22: 0.9373 REMARK 3 L33: 2.6564 L12: -0.1912 REMARK 3 L13: -0.0160 L23: 0.5235 REMARK 3 S TENSOR REMARK 3 S11: 0.0095 S12: -0.2761 S13: -0.0491 REMARK 3 S21: 0.3450 S22: 0.1409 S23: -0.0900 REMARK 3 S31: 0.4602 S32: 0.0743 S33: -0.1538 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5YT9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-NOV-17. REMARK 100 THE DEPOSITION ID IS D_1300005693. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-DEC-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL15A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19702 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.766 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 2.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.77 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.87 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.50 REMARK 200 R MERGE FOR SHELL (I) : 0.47200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.430 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5YKC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS, 0.2M MGCL, 16% PEG8000, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 55.90500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 32.27677 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 104.53200 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 55.90500 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 32.27677 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 104.53200 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 55.90500 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 32.27677 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 104.53200 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 55.90500 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 32.27677 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 104.53200 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 55.90500 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 32.27677 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 104.53200 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 55.90500 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 32.27677 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 104.53200 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 64.55353 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 209.06400 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 64.55353 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 209.06400 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 64.55353 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 209.06400 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 64.55353 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 209.06400 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 64.55353 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 209.06400 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 64.55353 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 209.06400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 63690 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 167.71500 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -96.83030 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 167.71500 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 96.83030 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -37 REMARK 465 LEU A -36 REMARK 465 LEU A -35 REMARK 465 VAL A -34 REMARK 465 ASN A -33 REMARK 465 GLN A -32 REMARK 465 SER A -31 REMARK 465 HIS A -30 REMARK 465 GLN A -29 REMARK 465 GLY A -28 REMARK 465 PHE A -27 REMARK 465 ASN A -26 REMARK 465 LYS A -25 REMARK 465 GLU A -24 REMARK 465 HIS A -23 REMARK 465 THR A -22 REMARK 465 SER A -21 REMARK 465 LYS A -20 REMARK 465 MET A -19 REMARK 465 VAL A -18 REMARK 465 SER A -17 REMARK 465 ALA A -16 REMARK 465 ILE A -15 REMARK 465 VAL A -14 REMARK 465 LEU A -13 REMARK 465 TYR A -12 REMARK 465 VAL A -11 REMARK 465 LEU A -10 REMARK 465 LEU A -9 REMARK 465 ALA A -8 REMARK 465 ALA A -7 REMARK 465 ALA A -6 REMARK 465 ALA A -5 REMARK 465 HIS A -4 REMARK 465 SER A -3 REMARK 465 ALA A -2 REMARK 465 PHE A -1 REMARK 465 ALA A 0 REMARK 465 SER A 1 REMARK 465 ALA A 2 REMARK 465 PRO A 324 REMARK 465 GLN A 325 REMARK 465 ARG A 326 REMARK 465 GLU A 327 REMARK 465 THR A 328 REMARK 465 ARG A 329 REMARK 465 GLY A 330 REMARK 465 LEU A 331 REMARK 465 PHE A 332 REMARK 465 VAL A 507 REMARK 465 PRO A 508 REMARK 465 ARG A 509 REMARK 465 GLY A 510 REMARK 465 SER A 511 REMARK 465 PRO A 512 REMARK 465 GLY A 513 REMARK 465 SER A 514 REMARK 465 GLY A 515 REMARK 465 TYR A 516 REMARK 465 ILE A 517 REMARK 465 PRO A 518 REMARK 465 GLU A 519 REMARK 465 ALA A 520 REMARK 465 PRO A 521 REMARK 465 ARG A 522 REMARK 465 ASP A 523 REMARK 465 GLY A 524 REMARK 465 GLN A 525 REMARK 465 ALA A 526 REMARK 465 TYR A 527 REMARK 465 VAL A 528 REMARK 465 ARG A 529 REMARK 465 LYS A 530 REMARK 465 ASP A 531 REMARK 465 GLY A 532 REMARK 465 GLU A 533 REMARK 465 TRP A 534 REMARK 465 VAL A 535 REMARK 465 LEU A 536 REMARK 465 LEU A 537 REMARK 465 SER A 538 REMARK 465 THR A 539 REMARK 465 PHE A 540 REMARK 465 LEU A 541 REMARK 465 GLY A 542 REMARK 465 HIS A 543 REMARK 465 HIS A 544 REMARK 465 HIS A 545 REMARK 465 HIS A 546 REMARK 465 HIS A 547 REMARK 465 HIS A 548 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN A 289 O HOH A 1101 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 4 117.42 88.20 REMARK 500 LYS A 56 -137.56 60.22 REMARK 500 PHE A 73 71.61 -110.57 REMARK 500 SER A 145 -156.43 -135.88 REMARK 500 PHE A 147 126.29 -34.55 REMARK 500 ASN A 158 26.12 80.48 REMARK 500 GLN A 195 -42.76 60.95 REMARK 500 ASN A 239 -4.00 81.85 REMARK 500 ASN A 276 98.70 -62.88 REMARK 500 SER A 290 48.00 -81.66 REMARK 500 HIS A 298 140.82 -174.26 REMARK 500 PHE A 300 60.15 -106.30 REMARK 500 LEU A 320 157.91 -37.06 REMARK 500 ALA A 336 -136.40 54.69 REMARK 500 TYR A 353 -151.27 -134.86 REMARK 500 HIS A 354 101.89 -169.00 REMARK 500 ASN A 357 -162.70 -117.12 REMARK 500 GLU A 358 21.88 -79.87 REMARK 500 GLN A 359 -5.82 -171.42 REMARK 500 SER A 361 -60.39 -107.16 REMARK 500 TYR A 363 58.51 81.15 REMARK 500 SER A 390 35.52 -89.65 REMARK 500 GLN A 454 -70.16 -92.30 REMARK 500 ARG A 456 -100.00 -108.21 REMARK 500 ASN A 458 7.71 -67.47 REMARK 500 ASP A 474 -159.77 -69.90 REMARK 500 TYR A 491 12.74 -140.49 REMARK 500 REMARK 500 REMARK: NULL DBREF 5YT9 A -37 548 PDB 5YT9 5YT9 -37 548 SEQRES 1 A 586 MET LEU LEU VAL ASN GLN SER HIS GLN GLY PHE ASN LYS SEQRES 2 A 586 GLU HIS THR SER LYS MET VAL SER ALA ILE VAL LEU TYR SEQRES 3 A 586 VAL LEU LEU ALA ALA ALA ALA HIS SER ALA PHE ALA SER SEQRES 4 A 586 ALA GLY ASP ARG ILE CYS ILE GLY TYR HIS ALA ASN ASN SEQRES 5 A 586 SER THR THR GLN VAL ASP THR ILE MET GLU LYS ASN VAL SEQRES 6 A 586 THR VAL THR HIS ALA GLN ASP ILE LEU GLU LYS GLU HIS SEQRES 7 A 586 ASN GLY ARG LEU CYS SER LEU LYS GLY VAL LYS PRO LEU SEQRES 8 A 586 ILE LEU LYS ASN CYS SER VAL ALA GLY TRP LEU LEU GLY SEQRES 9 A 586 ASN PRO MET CYS ASP GLU PHE LEU ASN ALA PRO GLU TRP SEQRES 10 A 586 SER TYR ILE VAL GLU LYS ASP ARG PRO SER ASN GLY LEU SEQRES 11 A 586 CYS TYR PRO GLY THR PHE ASN TYR TYR GLU GLU LEU LYS SEQRES 12 A 586 HIS LEU MET SER SER THR ASN GLN PHE GLU LYS ILE GLN SEQRES 13 A 586 ILE PHE PRO ARG SER SER TRP SER ASN HIS ASP ALA SER SEQRES 14 A 586 SER GLY VAL SER SER ALA CYS PRO TYR ASN GLY ARG SER SEQRES 15 A 586 SER PHE PHE ARG ASN VAL VAL TRP LEU ILE LYS LYS ASN SEQRES 16 A 586 ASN VAL TYR ARG THR ILE THR ARG THR TYR ASN ASN THR SEQRES 17 A 586 ASN ILE GLU ASP LEU LEU ILE ILE TRP GLY ILE HIS HIS SEQRES 18 A 586 PRO ASN ASN ALA ALA GLU GLN ILE LYS LEU TYR GLN ASN SEQRES 19 A 586 PRO SER THR TYR VAL SER VAL GLY THR SER THR LEU ASN SEQRES 20 A 586 GLN ARG SER ILE PRO GLU ILE ALA THR ARG PRO LYS VAL SEQRES 21 A 586 ASN GLY GLN SER SER ARG MET GLU PHE PHE TRP THR ILE SEQRES 22 A 586 LEU ARG PRO ASN ASP SER ILE THR PHE GLU SER THR GLY SEQRES 23 A 586 ASN PHE ILE ALA PRO GLU TYR ALA TYR LYS ILE VAL LYS SEQRES 24 A 586 LYS GLY ASP SER ALA ILE MET LYS SER GLU LEU SER TYR SEQRES 25 A 586 SER ASN CYS ASP THR LYS CYS GLN THR PRO VAL GLY ALA SEQRES 26 A 586 ILE ASN SER SER MET PRO PHE HIS ASN VAL HIS PRO PHE SEQRES 27 A 586 ALA ILE GLY GLU CYS PRO LYS TYR VAL LYS LEU LYS LYS SEQRES 28 A 586 LEU VAL LEU ALA THR GLY LEU ARG ASN ILE PRO GLN ARG SEQRES 29 A 586 GLU THR ARG GLY LEU PHE GLY ALA ILE ALA GLY PHE ILE SEQRES 30 A 586 GLU GLY GLY TRP GLN GLY MET VAL ASP GLY TRP TYR GLY SEQRES 31 A 586 TYR HIS HIS SER ASN GLU GLN GLY SER GLY TYR ALA ALA SEQRES 32 A 586 ASP LYS GLU SER THR GLN LYS ALA VAL ASP GLY ILE THR SEQRES 33 A 586 ASN LYS VAL ASN SER ILE ILE SER LYS MET ASN SER GLN SEQRES 34 A 586 PHE GLU ALA VAL GLY LYS GLU PHE ASN ASN LEU GLU ARG SEQRES 35 A 586 ARG ILE GLU ASN LEU ASN LYS LYS MET GLU ASP GLY PHE SEQRES 36 A 586 ILE ASP VAL TRP THR TYR ASN ALA GLU LEU LEU VAL LEU SEQRES 37 A 586 MET GLU ASN GLU ARG THR LEU ASP LEU HIS ASP SER ASN SEQRES 38 A 586 VAL LYS ASN LEU TYR ASP LYS VAL ARG ARG GLN LEU ARG SEQRES 39 A 586 ASP ASN ALA LYS GLU LEU GLY ASN GLY CYS PHE GLU PHE SEQRES 40 A 586 TYR HIS ARG CYS ASP ASN LYS CYS MET GLU SER VAL ARG SEQRES 41 A 586 ASN GLY THR TYR ASP TYR PRO GLN TYR SER GLU GLU SER SEQRES 42 A 586 ARG LEU LYS ARG GLU GLU ILE ASP SER GLY LEU VAL PRO SEQRES 43 A 586 ARG GLY SER PRO GLY SER GLY TYR ILE PRO GLU ALA PRO SEQRES 44 A 586 ARG ASP GLY GLN ALA TYR VAL ARG LYS ASP GLY GLU TRP SEQRES 45 A 586 VAL LEU LEU SER THR PHE LEU GLY HIS HIS HIS HIS HIS SEQRES 46 A 586 HIS HET NAG A1001 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 2 NAG C8 H15 N O6 FORMUL 3 HOH *20(H2 O) HELIX 1 AA1 SER A 59 GLY A 66 1 8 HELIX 2 AA2 TYR A 100 SER A 109 1 10 HELIX 3 AA3 PRO A 121 TRP A 125 5 5 HELIX 4 AA4 ASN A 186 GLN A 195 1 10 HELIX 5 AA5 GLY A 337 GLY A 341 5 5 HELIX 6 AA6 ASP A 366 GLN A 371 1 6 HELIX 7 AA7 LYS A 372 SER A 386 1 15 HELIX 8 AA8 LYS A 387 ASN A 389 5 3 HELIX 9 AA9 GLU A 403 ARG A 453 1 51 HELIX 10 AB1 CYS A 477 ASN A 483 1 7 HELIX 11 AB2 TYR A 488 SER A 504 1 17 SHEET 1 AA1 3 ARG A 5 CYS A 7 0 SHEET 2 AA1 3 CYS A 466 PHE A 469 -1 O PHE A 467 N ILE A 6 SHEET 3 AA1 3 ALA A 459 GLU A 461 -1 N LYS A 460 O GLU A 468 SHEET 1 AA2 2 GLY A 9 TYR A 10 0 SHEET 2 AA2 2 TYR A 351 GLY A 352 -1 O GLY A 352 N GLY A 9 SHEET 1 AA3 2 GLN A 18 VAL A 19 0 SHEET 2 AA3 2 VAL A 27 THR A 28 -1 O VAL A 27 N VAL A 19 SHEET 1 AA4 2 ALA A 32 ASP A 34 0 SHEET 2 AA4 2 VAL A 315 ALA A 317 -1 O LEU A 316 N GLN A 33 SHEET 1 AA5 3 LEU A 36 GLU A 37 0 SHEET 2 AA5 3 PHE A 294 HIS A 295 1 O PHE A 294 N GLU A 37 SHEET 3 AA5 3 LYS A 307 TYR A 308 1 O LYS A 307 N HIS A 295 SHEET 1 AA6 2 LEU A 44 LEU A 47 0 SHEET 2 AA6 2 TYR A 274 THR A 279 1 O CYS A 277 N SER A 46 SHEET 1 AA7 3 LEU A 53 ILE A 54 0 SHEET 2 AA7 3 ILE A 82 GLU A 84 1 O VAL A 83 N LEU A 53 SHEET 3 AA7 3 ILE A 267 LYS A 269 1 O MET A 268 N ILE A 82 SHEET 1 AA8 5 GLY A 96 PHE A 98 0 SHEET 2 AA8 5 ARG A 228 LEU A 236 1 O PHE A 231 N THR A 97 SHEET 3 AA8 5 ASP A 174 HIS A 183 -1 N HIS A 183 O ARG A 228 SHEET 4 AA8 5 TYR A 255 LYS A 262 -1 O TYR A 257 N LEU A 176 SHEET 5 AA8 5 THR A 111 GLN A 118 -1 N GLU A 115 O LYS A 258 SHEET 1 AA9 5 GLY A 96 PHE A 98 0 SHEET 2 AA9 5 ARG A 228 LEU A 236 1 O PHE A 231 N THR A 97 SHEET 3 AA9 5 ASP A 174 HIS A 183 -1 N HIS A 183 O ARG A 228 SHEET 4 AA9 5 PHE A 250 PRO A 253 -1 O ILE A 251 N GLY A 180 SHEET 5 AA9 5 VAL A 150 TRP A 152 -1 N VAL A 151 O ALA A 252 SHEET 1 AB1 2 SER A 135 TYR A 140 0 SHEET 2 AB1 2 ARG A 143 SER A 145 -1 O SER A 145 N SER A 135 SHEET 1 AB2 4 ILE A 163 ASN A 168 0 SHEET 2 AB2 4 SER A 241 SER A 246 -1 O SER A 246 N ILE A 163 SHEET 3 AB2 4 VAL A 201 GLY A 204 -1 N SER A 202 O GLU A 245 SHEET 4 AB2 4 ASN A 209 SER A 212 -1 O SER A 212 N VAL A 201 SHEET 1 AB3 2 CYS A 281 GLN A 282 0 SHEET 2 AB3 2 ILE A 302 GLY A 303 -1 O ILE A 302 N GLN A 282 SSBOND 1 CYS A 7 CYS A 466 1555 1555 2.04 SSBOND 2 CYS A 45 CYS A 277 1555 1555 2.04 SSBOND 3 CYS A 58 CYS A 70 1555 1555 2.07 SSBOND 4 CYS A 93 CYS A 138 1555 1555 2.09 SSBOND 5 CYS A 281 CYS A 305 1555 1555 2.05 LINK ND2 ASN A 14 C1 NAG A1001 1555 1555 1.52 CRYST1 111.810 111.810 313.596 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008944 0.005164 0.000000 0.00000 SCALE2 0.000000 0.010327 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003189 0.00000