HEADER STRUCTURAL PROTEIN 18-NOV-17 5YTI TITLE CRYSTAL STRUCTURE OF FLAGELLAR HOOK ASSOCIATED PROTEIN-3 (HAP-3: TITLE 2 Q5ZW61_LEGPH) FROM LEGIONELLA PNEUMOPHILA COMPND MOL_ID: 1; COMPND 2 MOLECULE: FLAGELLAR HOOK ASSOCIATED PROTEIN TYPE 3 FLGL; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEGIONELLA PNEUMOPHILA SUBSP. PNEUMOPHILA SOURCE 3 (STRAIN PHILADELPHIA 1 / ATCC 33152 / DSM 7513); SOURCE 4 ORGANISM_TAXID: 272624; SOURCE 5 STRAIN: PHILADELPHIA 1 / ATCC 33152 / DSM 7513; SOURCE 6 GENE: FLGL, LPG1226; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: BC-PSGX4(BC) KEYWDS FLAGELLAR HOOK ASSOCIATED PROTEIN3, HAP-3, LEGIONELLA PNEUMOPHILA, KEYWDS 2 STRUCTURAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.LANKIPALLI,R.P.HEGDE,D.DEY,S.C.ALMO,U.A.RAMAGOPAL REVDAT 1 17-JAN-18 5YTI 0 JRNL AUTH S.LANKIPALLI,U.A.RAMAGOPAL JRNL TITL CRYSTAL STRUCTURE OF HOOK ASSOCIATED PROTEIN-3 (HAP-3: JRNL TITL 2 Q5ZW61_LEGPH) FROM LEGIONELLA PNEUMOPHILA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 76.15 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 13543 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.238 REMARK 3 R VALUE (WORKING SET) : 0.235 REMARK 3 FREE R VALUE : 0.288 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 733 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.82 REMARK 3 REFLECTION IN BIN (WORKING SET) : 964 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.58 REMARK 3 BIN R VALUE (WORKING SET) : 0.3590 REMARK 3 BIN FREE R VALUE SET COUNT : 45 REMARK 3 BIN FREE R VALUE : 0.3560 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2472 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 2 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 91.85 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.46000 REMARK 3 B22 (A**2) : -1.46000 REMARK 3 B33 (A**2) : 2.92000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.551 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.347 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.300 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 36.065 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.918 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.888 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2522 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2268 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3428 ; 1.606 ; 1.969 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5288 ; 0.786 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 333 ; 6.617 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 118 ;40.490 ;26.102 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 400 ;19.226 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;19.013 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 404 ; 0.078 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2883 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 458 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 48 A 70 REMARK 3 RESIDUE RANGE : A 351 A 377 REMARK 3 ORIGIN FOR THE GROUP (A): -14.7297 -51.4527 19.6555 REMARK 3 T TENSOR REMARK 3 T11: 0.5232 T22: 0.0779 REMARK 3 T33: 0.3583 T12: 0.0243 REMARK 3 T13: -0.1411 T23: -0.0342 REMARK 3 L TENSOR REMARK 3 L11: 1.5344 L22: 7.5693 REMARK 3 L33: 1.7082 L12: -0.2817 REMARK 3 L13: 0.0211 L23: 3.5694 REMARK 3 S TENSOR REMARK 3 S11: 0.1034 S12: 0.0583 S13: -0.1200 REMARK 3 S21: 0.2159 S22: 0.0971 S23: -0.3553 REMARK 3 S31: 0.0568 S32: 0.0559 S33: -0.2005 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 71 A 350 REMARK 3 ORIGIN FOR THE GROUP (A): -21.4740 -8.0623 43.0570 REMARK 3 T TENSOR REMARK 3 T11: 0.6239 T22: 0.4136 REMARK 3 T33: 0.2481 T12: -0.1567 REMARK 3 T13: -0.1846 T23: 0.0150 REMARK 3 L TENSOR REMARK 3 L11: 0.5003 L22: 0.6459 REMARK 3 L33: 0.3215 L12: 0.2937 REMARK 3 L13: 0.0964 L23: -0.0902 REMARK 3 S TENSOR REMARK 3 S11: 0.0304 S12: -0.3125 S13: -0.0696 REMARK 3 S21: -0.3316 S22: -0.0469 S23: 0.1693 REMARK 3 S31: -0.1877 S32: 0.0383 S33: 0.0164 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 5YTI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-NOV-17. REMARK 100 THE DEPOSITION ID IS D_1300005891. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JUN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.987 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14351 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.750 REMARK 200 RESOLUTION RANGE LOW (A) : 76.150 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 8.700 REMARK 200 R MERGE (I) : 0.08900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.10 REMARK 200 R MERGE FOR SHELL (I) : 0.93800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: AB INITIO PHASING REMARK 200 SOFTWARE USED: SHELXDE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 400, 0.1M CADMIUM CHLORIDE REMARK 280 HYDRATE, 0.1M SODIUM ACETATE TRIHYDRATE, PH 4.6, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 53.84350 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 53.84350 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 45.12400 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 53.84350 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 53.84350 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 45.12400 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 53.84350 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 53.84350 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 45.12400 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 53.84350 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 53.84350 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 45.12400 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHOR DETERMINED BIOLOGICAL UNIT: UNKNOWN REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3620 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 90.24800 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 ARG A 2 REMARK 465 ILE A 3 REMARK 465 SER A 4 REMARK 465 THR A 5 REMARK 465 ASN A 6 REMARK 465 GLN A 7 REMARK 465 ILE A 8 REMARK 465 TYR A 9 REMARK 465 GLN A 10 REMARK 465 ARG A 11 REMARK 465 GLY A 12 REMARK 465 LEU A 13 REMARK 465 ASP A 14 REMARK 465 ASN A 15 REMARK 465 LEU A 16 REMARK 465 LEU A 17 REMARK 465 THR A 18 REMARK 465 GLN A 19 REMARK 465 GLN A 20 REMARK 465 GLU A 21 REMARK 465 ARG A 22 REMARK 465 LEU A 23 REMARK 465 ALA A 24 REMARK 465 ARG A 25 REMARK 465 LEU A 26 REMARK 465 GLN A 27 REMARK 465 ASP A 28 REMARK 465 GLN A 29 REMARK 465 GLN A 30 REMARK 465 ALA A 31 REMARK 465 SER A 32 REMARK 465 GLY A 33 REMARK 465 ILE A 34 REMARK 465 ARG A 35 REMARK 465 VAL A 36 REMARK 465 ARG A 37 REMARK 465 THR A 38 REMARK 465 PRO A 39 REMARK 465 SER A 40 REMARK 465 ASP A 41 REMARK 465 ASP A 42 REMARK 465 PRO A 43 REMARK 465 VAL A 44 REMARK 465 ALA A 45 REMARK 465 SER A 46 REMARK 465 ALA A 47 REMARK 465 PRO A 378 REMARK 465 VAL A 379 REMARK 465 ALA A 380 REMARK 465 VAL A 381 REMARK 465 ALA A 382 REMARK 465 THR A 383 REMARK 465 GLU A 384 REMARK 465 LEU A 385 REMARK 465 ASN A 386 REMARK 465 LEU A 387 REMARK 465 GLN A 388 REMARK 465 LEU A 389 REMARK 465 VAL A 390 REMARK 465 ASN A 391 REMARK 465 LEU A 392 REMARK 465 GLN A 393 REMARK 465 ALA A 394 REMARK 465 ALA A 395 REMARK 465 GLN A 396 REMARK 465 LEU A 397 REMARK 465 SER A 398 REMARK 465 PHE A 399 REMARK 465 THR A 400 REMARK 465 ARG A 401 REMARK 465 ILE A 402 REMARK 465 GLN A 403 REMARK 465 GLY A 404 REMARK 465 LEU A 405 REMARK 465 SER A 406 REMARK 465 LEU A 407 REMARK 465 PHE A 408 REMARK 465 ASN A 409 REMARK 465 PHE A 410 REMARK 465 LEU A 411 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 53 NZ REMARK 470 GLN A 54 CD OE1 NE2 REMARK 470 ARG A 196 CD NE CZ NH1 NH2 REMARK 470 LEU A 279 CD1 CD2 REMARK 470 LYS A 357 CD CE NZ REMARK 470 LYS A 371 CG CD CE NZ REMARK 470 LYS A 372 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR A 261 O GLY A 278 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 160 33.94 -95.92 REMARK 500 SER A 170 22.56 -144.76 REMARK 500 ASN A 270 65.98 25.76 REMARK 500 PRO A 290 152.37 -49.51 REMARK 500 THR A 312 -50.68 -123.54 REMARK 500 SER A 314 -30.86 -36.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD A 501 DBREF 5YTI A 1 411 UNP Q5ZW61 Q5ZW61_LEGPH 1 411 SEQRES 1 A 411 MSE ARG ILE SER THR ASN GLN ILE TYR GLN ARG GLY LEU SEQRES 2 A 411 ASP ASN LEU LEU THR GLN GLN GLU ARG LEU ALA ARG LEU SEQRES 3 A 411 GLN ASP GLN GLN ALA SER GLY ILE ARG VAL ARG THR PRO SEQRES 4 A 411 SER ASP ASP PRO VAL ALA SER ALA GLN ILE GLU LEU ILE SEQRES 5 A 411 LYS GLN ARG ILE ASN ASN ILE GLU LEU PHE GLN ASN ASN SEQRES 6 A 411 ARG GLN ALA ALA ASP SER ALA LEU ARG LEU GLU GLU GLY SEQRES 7 A 411 ILE LEU SER ASN ALA VAL ASN SER LEU HIS ARG LEU ARG SEQRES 8 A 411 GLU ILE GLN ILE GLN ALA GLY ASN PRO SER LEU SER GLU SEQRES 9 A 411 GLU ASP ARG LYS THR LEU ALA VAL GLU ALA GLN ALA LEU SEQRES 10 A 411 LEU ASN GLN LEU LEU ASP TYR ALA ASN THR LYS ASP SER SEQRES 11 A 411 ASN GLY SER TYR MSE PHE SER GLY SER LYS SER LEU THR SEQRES 12 A 411 GLN PRO VAL SER LEU ASN LEU SER GLY GLN TYR VAL TYR SEQRES 13 A 411 ASN GLY ASP SER THR GLN ARG PHE GLN ALA VAL THR THR SEQRES 14 A 411 SER LEU LEU VAL ALA VAL ASN ASP THR GLY ASP ASN VAL SEQRES 15 A 411 PHE MSE ARG ILE PRO SER GLY ASN GLY ARG PHE ALA ILE SEQRES 16 A 411 ARG GLU THR LEU THR PRO ASN THR GLY THR ALA SER VAL SEQRES 17 A 411 SER SER GLY SER VAL THR ASN GLU ALA ALA PHE VAL PRO SEQRES 18 A 411 ASP ASN TYR THR MSE THR PHE ALA LEU ASN SER GLN GLY SEQRES 19 A 411 ASN LEU VAL VAL MSE VAL SER GLY THR LEU SER GLY ASN SEQRES 20 A 411 VAL ILE PRO PRO SER GLY LEU PRO ASP ASP ALA PRO LEU SEQRES 21 A 411 TYR GLN GLU GLY SER ALA ILE GLY PHE ASN GLY MSE GLU SEQRES 22 A 411 MSE VAL VAL SER GLY LEU PRO LYS ALA GLY ASP SER PHE SEQRES 23 A 411 SER ILE SER PRO ALA LYS ASN GLU SER ILE PHE SER THR SEQRES 24 A 411 VAL GLN ARG MSE ILE ASN ASN LEU ASN LYS PRO TYR THR SEQRES 25 A 411 SER SER VAL GLU LYS ALA ALA THR GLN THR GLU ASN ASN SEQRES 26 A 411 GLN LEU LEU ALA GLN ILE ASP SER ALA LEU GLY HIS ILE SEQRES 27 A 411 LEU SER VAL GLN SER ASP LEU GLY ALA ARG LEU ASN GLN SEQRES 28 A 411 LEU GLU THR ALA GLU LYS ALA ASN ASN ASP TYR LEU ASP SEQRES 29 A 411 ILE SER ALA ALA THR LEU LYS LYS LEU ARG GLU ILE ASP SEQRES 30 A 411 PRO VAL ALA VAL ALA THR GLU LEU ASN LEU GLN LEU VAL SEQRES 31 A 411 ASN LEU GLN ALA ALA GLN LEU SER PHE THR ARG ILE GLN SEQRES 32 A 411 GLY LEU SER LEU PHE ASN PHE LEU MODRES 5YTI MSE A 135 MET MODIFIED RESIDUE MODRES 5YTI MSE A 184 MET MODIFIED RESIDUE MODRES 5YTI MSE A 226 MET MODIFIED RESIDUE MODRES 5YTI MSE A 239 MET MODIFIED RESIDUE MODRES 5YTI MSE A 272 MET MODIFIED RESIDUE MODRES 5YTI MSE A 274 MET MODIFIED RESIDUE MODRES 5YTI MSE A 303 MET MODIFIED RESIDUE HET MSE A 135 8 HET MSE A 184 8 HET MSE A 226 8 HET MSE A 239 8 HET MSE A 272 8 HET MSE A 274 8 HET MSE A 303 8 HET CD A 501 1 HETNAM MSE SELENOMETHIONINE HETNAM CD CADMIUM ION FORMUL 1 MSE 7(C5 H11 N O2 SE) FORMUL 2 CD CD 2+ FORMUL 3 HOH *2(H2 O) HELIX 1 AA1 GLN A 48 ALA A 97 1 50 HELIX 2 AA2 SER A 103 ASN A 126 1 24 HELIX 3 AA3 THR A 178 PHE A 183 1 6 HELIX 4 AA4 LEU A 254 ALA A 258 5 5 HELIX 5 AA5 SER A 295 ASN A 308 1 14 HELIX 6 AA6 VAL A 315 GLU A 375 1 61 SHEET 1 AA1 2 VAL A 146 LEU A 148 0 SHEET 2 AA1 2 TYR A 154 TYR A 156 -1 O VAL A 155 N SER A 147 SHEET 1 AA2 2 PHE A 164 THR A 168 0 SHEET 2 AA2 2 LEU A 171 ALA A 174 -1 O LEU A 171 N VAL A 167 SHEET 1 AA3 5 PHE A 193 GLU A 197 0 SHEET 2 AA3 5 SER A 285 PRO A 290 -1 O SER A 289 N ALA A 194 SHEET 3 AA3 5 TYR A 224 LEU A 230 -1 N TYR A 224 O ILE A 288 SHEET 4 AA3 5 LEU A 236 GLY A 242 -1 O SER A 241 N THR A 225 SHEET 5 AA3 5 GLY A 246 ILE A 249 -1 O ILE A 249 N VAL A 240 SHEET 1 AA4 3 SER A 207 VAL A 208 0 SHEET 2 AA4 3 MSE A 272 SER A 277 -1 O SER A 277 N SER A 207 SHEET 3 AA4 3 SER A 212 VAL A 213 -1 N SER A 212 O GLU A 273 SHEET 1 AA5 3 SER A 207 VAL A 208 0 SHEET 2 AA5 3 MSE A 272 SER A 277 -1 O SER A 277 N SER A 207 SHEET 3 AA5 3 ALA A 266 PHE A 269 -1 N PHE A 269 O MSE A 272 LINK C TYR A 134 N MSE A 135 1555 1555 1.33 LINK C MSE A 135 N PHE A 136 1555 1555 1.33 LINK C PHE A 183 N MSE A 184 1555 1555 1.33 LINK C MSE A 184 N ARG A 185 1555 1555 1.32 LINK C THR A 225 N MSE A 226 1555 1555 1.32 LINK C MSE A 226 N THR A 227 1555 1555 1.32 LINK C VAL A 238 N MSE A 239 1555 1555 1.33 LINK C MSE A 239 N VAL A 240 1555 1555 1.32 LINK C GLY A 271 N MSE A 272 1555 1555 1.33 LINK C MSE A 272 N GLU A 273 1555 1555 1.34 LINK C GLU A 273 N MSE A 274 1555 1555 1.33 LINK C MSE A 274 N VAL A 275 1555 1555 1.33 LINK C ARG A 302 N MSE A 303 1555 1555 1.33 LINK C MSE A 303 N ILE A 304 1555 1555 1.34 LINK OD1 ASP A 123 CD CD A 501 1555 5455 2.45 CISPEP 1 ILE A 249 PRO A 250 0 -3.88 SITE 1 AC1 2 ASP A 123 ASP A 377 CRYST1 107.687 107.687 90.248 90.00 90.00 90.00 P 42 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009286 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009286 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011081 0.00000