HEADER MEMBRANE PROTEIN 21-NOV-17 5YUA TITLE CRYSTAL STRUCTURE OF VOLTAGE-GATED SODIUM CHANNEL NAVAB IN HIGH-PH TITLE 2 CONDITION COMPND MOL_ID: 1; COMPND 2 MOLECULE: ION TRANSPORT PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PROKARYOTIC VOLTAGE GATED SODIUM CHANNEL; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARCOBACTER BUTZLERI; SOURCE 3 ORGANISM_TAXID: 28197; SOURCE 4 GENE: SAMEA4475700_01771; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ION CHANNEL, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.IRIE,T.SHIMOMURA,Y.FUJIYOSHI REVDAT 3 22-NOV-23 5YUA 1 REMARK REVDAT 2 17-JAN-18 5YUA 1 JRNL REVDAT 1 27-DEC-17 5YUA 0 JRNL AUTH K.IRIE,Y.HAGA,T.SHIMOMURA,Y.FUJIYOSHI JRNL TITL STRUCTURAL INSIGHT ON THE VOLTAGE DEPENDENCE OF PROKARYOTIC JRNL TITL 2 VOLTAGE GATED SODIUM CHANNEL NAVAB. JRNL REF FEBS LETT. 2017 JRNL REFN ISSN 1873-3468 JRNL PMID 29274127 JRNL DOI 10.1002/1873-3468.12955 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.46 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.336 REMARK 3 COMPLETENESS FOR RANGE (%) : 87.8 REMARK 3 NUMBER OF REFLECTIONS : 17985 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.232 REMARK 3 R VALUE (WORKING SET) : 0.230 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.121 REMARK 3 FREE R VALUE TEST SET COUNT : 921 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 31.4625 - 5.3503 0.91 2690 122 0.2350 0.2483 REMARK 3 2 5.3503 - 4.2500 1.00 2774 167 0.1699 0.2076 REMARK 3 3 4.2500 - 3.7138 1.00 2756 158 0.1896 0.2202 REMARK 3 4 3.7138 - 3.3746 1.00 2754 151 0.2265 0.2691 REMARK 3 5 3.3746 - 3.1330 1.00 2734 142 0.3139 0.3604 REMARK 3 6 3.1330 - 2.9484 0.91 2484 145 0.3671 0.4312 REMARK 3 7 2.9484 - 2.8009 0.32 872 36 0.3715 0.4027 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.448 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.355 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 60.98 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 88.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 2290 REMARK 3 ANGLE : 1.325 3065 REMARK 3 CHIRALITY : 0.058 356 REMARK 3 PLANARITY : 0.007 321 REMARK 3 DIHEDRAL : 24.136 931 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 999 THROUGH 1096 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.2436 -23.4497 28.3676 REMARK 3 T TENSOR REMARK 3 T11: 0.9761 T22: 1.2256 REMARK 3 T33: 0.8716 T12: 0.4551 REMARK 3 T13: -0.1745 T23: 0.1432 REMARK 3 L TENSOR REMARK 3 L11: 1.8815 L22: 3.0800 REMARK 3 L33: 2.6534 L12: 0.1647 REMARK 3 L13: -0.5662 L23: -1.6791 REMARK 3 S TENSOR REMARK 3 S11: 0.1107 S12: 0.1397 S13: -0.3776 REMARK 3 S21: 0.0070 S22: -0.1766 S23: -0.4027 REMARK 3 S31: 1.0933 S32: 1.2068 S33: 0.0635 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1097 THROUGH 1226 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.4582 -13.1356 23.1498 REMARK 3 T TENSOR REMARK 3 T11: 0.4420 T22: 0.2895 REMARK 3 T33: 0.3402 T12: -0.0042 REMARK 3 T13: 0.0755 T23: 0.0780 REMARK 3 L TENSOR REMARK 3 L11: 3.9584 L22: 2.1976 REMARK 3 L33: 3.4847 L12: -0.3675 REMARK 3 L13: 1.0862 L23: -0.3862 REMARK 3 S TENSOR REMARK 3 S11: -0.1278 S12: -0.4790 S13: -0.2996 REMARK 3 S21: 0.4637 S22: -0.0862 S23: -0.0741 REMARK 3 S31: 0.5109 S32: 0.0493 S33: 0.1591 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5YUA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 29-NOV-17. REMARK 100 THE DEPOSITION ID IS D_1300005897. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-JAN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20186 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 31.470 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 87.7 REMARK 200 DATA REDUNDANCY : 9.100 REMARK 200 R MERGE (I) : 0.24800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.0200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 25.3 REMARK 200 DATA REDUNDANCY IN SHELL : 9.30 REMARK 200 R MERGE FOR SHELL (I) : 0.31360 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3RVY REMARK 200 REMARK 200 REMARK: PYRAMIDAL SHAPE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 80.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 6.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 11% POLYETHYLENE GLYCOL MONOMETHYL REMARK 280 ETHER 2000, 100 MM NACL, 100 MM CALCIUM NITRATE, 100 MM TRIS-HCL REMARK 280 PH 8.4, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 63.22500 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 63.22500 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 100.82900 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 63.22500 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 63.22500 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 100.82900 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 63.22500 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 63.22500 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 100.82900 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 63.22500 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 63.22500 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 100.82900 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 63.22500 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 63.22500 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 100.82900 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 63.22500 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 63.22500 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 100.82900 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 63.22500 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 63.22500 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 100.82900 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 63.22500 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 63.22500 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 100.82900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 53040 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 41750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -245.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CA CA A1301 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1401 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1402 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1403 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1405 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1406 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1408 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1409 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 997 REMARK 465 SER A 998 REMARK 465 LYS A 1227 REMARK 465 GLU A 1228 REMARK 465 GLU A 1229 REMARK 465 GLN A 1230 REMARK 465 HIS A 1231 REMARK 465 ILE A 1232 REMARK 465 ILE A 1233 REMARK 465 ASP A 1234 REMARK 465 GLU A 1235 REMARK 465 VAL A 1236 REMARK 465 GLN A 1237 REMARK 465 SER A 1238 REMARK 465 HIS A 1239 REMARK 465 GLU A 1240 REMARK 465 ASP A 1241 REMARK 465 ASN A 1242 REMARK 465 ILE A 1243 REMARK 465 ASN A 1244 REMARK 465 ASN A 1245 REMARK 465 GLU A 1246 REMARK 465 ILE A 1247 REMARK 465 ILE A 1248 REMARK 465 LYS A 1249 REMARK 465 LEU A 1250 REMARK 465 ARG A 1251 REMARK 465 GLU A 1252 REMARK 465 GLU A 1253 REMARK 465 ILE A 1254 REMARK 465 VAL A 1255 REMARK 465 GLU A 1256 REMARK 465 LEU A 1257 REMARK 465 LYS A 1258 REMARK 465 GLU A 1259 REMARK 465 LEU A 1260 REMARK 465 ILE A 1261 REMARK 465 LYS A 1262 REMARK 465 THR A 1263 REMARK 465 SER A 1264 REMARK 465 LEU A 1265 REMARK 465 LYS A 1266 REMARK 465 ASN A 1267 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A1068 -129.84 40.88 REMARK 500 THR A1175 -3.95 -57.59 REMARK 500 SER A1180 -62.69 -92.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1408 DISTANCE = 6.67 ANGSTROMS REMARK 525 HOH A1409 DISTANCE = 7.05 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 1N7 A 1304 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LMT A 1303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1N7 A 1304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PX4 A 1305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PX4 A 1306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PX4 A 1308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Poly-Saccharide residues LMT A REMARK 800 1302 through PX4 A 1307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues PX4 A 1309 and PX4 A REMARK 800 1310 DBREF1 5YUA A 1001 1267 UNP A0A239WB15_9PROT DBREF2 5YUA A A0A239WB15 1 267 SEQADV 5YUA GLY A 997 UNP A0A239WB1 EXPRESSION TAG SEQADV 5YUA SER A 998 UNP A0A239WB1 EXPRESSION TAG SEQADV 5YUA GLY A 999 UNP A0A239WB1 EXPRESSION TAG SEQADV 5YUA SER A 1000 UNP A0A239WB1 EXPRESSION TAG SEQRES 1 A 271 GLY SER GLY SER MET TYR LEU ARG ILE THR ASN ILE VAL SEQRES 2 A 271 GLU SER SER PHE PHE THR LYS PHE ILE ILE TYR LEU ILE SEQRES 3 A 271 VAL LEU ASN GLY ILE THR MET GLY LEU GLU THR SER LYS SEQRES 4 A 271 THR PHE MET GLN SER PHE GLY VAL TYR THR THR LEU PHE SEQRES 5 A 271 ASN GLN ILE VAL ILE THR ILE PHE THR ILE GLU ILE ILE SEQRES 6 A 271 LEU ARG ILE TYR VAL HIS ARG ILE SER PHE PHE LYS ASP SEQRES 7 A 271 PRO TRP SER LEU PHE ASP PHE PHE VAL VAL ALA ILE SER SEQRES 8 A 271 LEU VAL PRO THR SER SER GLY PHE GLU ILE LEU ARG VAL SEQRES 9 A 271 LEU ARG VAL LEU ARG LEU PHE ARG LEU VAL THR ALA VAL SEQRES 10 A 271 PRO GLN MET ARG LYS ILE VAL SER ALA LEU ILE SER VAL SEQRES 11 A 271 ILE PRO GLY MET LEU SER VAL ILE ALA LEU MET THR LEU SEQRES 12 A 271 PHE PHE TYR ILE PHE ALA ILE MET ALA THR GLN LEU PHE SEQRES 13 A 271 GLY GLU ARG PHE PRO GLU TRP PHE GLY THR LEU GLY GLU SEQRES 14 A 271 SER PHE TYR THR LEU PHE GLN VAL MET THR LEU GLU SER SEQRES 15 A 271 TRP SER MET GLY ILE VAL ARG PRO LEU MET GLU VAL TYR SEQRES 16 A 271 PRO TYR ALA TRP VAL PHE PHE ILE PRO PHE ILE PHE VAL SEQRES 17 A 271 VAL THR PHE VAL MET ILE ASN LEU VAL VAL ALA ILE ILE SEQRES 18 A 271 VAL ASP ALA MET ALA ILE LEU ASN GLN LYS GLU GLU GLN SEQRES 19 A 271 HIS ILE ILE ASP GLU VAL GLN SER HIS GLU ASP ASN ILE SEQRES 20 A 271 ASN ASN GLU ILE ILE LYS LEU ARG GLU GLU ILE VAL GLU SEQRES 21 A 271 LEU LYS GLU LEU ILE LYS THR SER LEU LYS ASN HET CA A1301 1 HET LMT A1302 35 HET LMT A1303 35 HET 1N7 A1304 32 HET PX4 A1305 46 HET PX4 A1306 46 HET PX4 A1307 46 HET PX4 A1308 46 HET PX4 A1309 46 HET PX4 A1310 46 HETNAM CA CALCIUM ION HETNAM LMT DODECYL-BETA-D-MALTOSIDE HETNAM 1N7 CHAPSO HETNAM PX4 1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE HETSYN 1N7 2-HYDROXY-N,N-DIMETHYL-3-SULFO-N-(3-{[(3BETA,5BETA, HETSYN 2 1N7 7BETA,12BETA)-3,7,12-TRIHYDROXY-24-OXOCHOLAN-24- HETSYN 3 1N7 YL]AMINO}PROPYL)PROPAN-1-AMINIUM FORMUL 2 CA CA 2+ FORMUL 3 LMT 2(C24 H46 O11) FORMUL 5 1N7 C32 H59 N2 O8 S 1+ FORMUL 6 PX4 6(C36 H73 N O8 P 1+) FORMUL 12 HOH *9(H2 O) HELIX 1 AA1 SER A 1000 GLU A 1010 1 11 HELIX 2 AA2 SER A 1011 GLU A 1032 1 22 HELIX 3 AA3 SER A 1034 ARG A 1068 1 35 HELIX 4 AA4 ARG A 1068 LYS A 1073 1 6 HELIX 5 AA5 ASP A 1074 VAL A 1089 1 16 HELIX 6 AA6 ILE A 1097 ARG A 1102 1 6 HELIX 7 AA7 VAL A 1103 LEU A 1106 5 4 HELIX 8 AA8 PHE A 1107 VAL A 1113 1 7 HELIX 9 AA9 VAL A 1113 ILE A 1127 1 15 HELIX 10 AB1 MET A 1130 GLY A 1153 1 24 HELIX 11 AB2 PHE A 1156 GLY A 1161 1 6 HELIX 12 AB3 THR A 1162 THR A 1175 1 14 HELIX 13 AB4 ILE A 1183 GLU A 1189 1 7 HELIX 14 AB5 ALA A 1194 ASN A 1225 1 32 LINK C12 LMT A1302 C34 PX4 A1307 1555 1555 1.50 LINK C21 PX4 A1309 C36 PX4 A1310 1555 1555 1.49 SITE 1 AC1 7 ILE A1097 LEU A1151 TYR A1191 TYR A1193 SITE 2 AC1 7 VAL A1196 PX4 A1308 PX4 A1309 SITE 1 AC2 5 GLN A1115 PRO A1128 LEU A1131 SER A1132 SITE 2 AC2 5 PX4 A1310 SITE 1 AC3 11 PHE A1141 GLY A1164 GLU A1165 PHE A1167 SITE 2 AC3 11 MET A1188 PRO A1192 TRP A1195 PHE A1203 SITE 3 AC3 11 LMT A1302 PX4 A1306 PX4 A1309 SITE 1 AC4 11 GLY A1026 ILE A1027 GLY A1030 SER A1034 SITE 2 AC4 11 THR A1036 LEU A1139 TYR A1142 THR A1162 SITE 3 AC4 11 LEU A1163 GLY A1164 PX4 A1305 SITE 1 AC5 5 PRO A1075 TRP A1076 LMT A1303 PX4 A1307 SITE 2 AC5 5 PX4 A1310 SITE 1 AC6 17 TRP A1076 PHE A1079 SER A1121 ILE A1124 SITE 2 AC6 17 ILE A1127 PRO A1128 LEU A1136 MET A1174 SITE 3 AC6 17 THR A1175 LEU A1176 THR A1206 MET A1209 SITE 4 AC6 17 PX4 A1305 PX4 A1308 PX4 A1310 HOH A1401 SITE 5 AC6 17 HOH A1403 SITE 1 AC7 8 ILE A1097 LEU A1131 TYR A1193 LMT A1303 SITE 2 AC7 8 1N7 A1304 PX4 A1305 PX4 A1307 PX4 A1308 CRYST1 126.450 126.450 201.658 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007908 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007908 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004959 0.00000