HEADER MEMBRANE PROTEIN 21-NOV-17 5YUB TITLE CRYSTAL STRUCTURE OF VOLTAGE-GATED SODIUM CHANNEL NAVAB E32Q MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: ION TRANSPORT PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: OLTAGE GATED SODIUM CHANNEL; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARCOBACTER BUTZLERI; SOURCE 3 ORGANISM_TAXID: 28197; SOURCE 4 GENE: SAMEA4475700_01771; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ION CHANNEL, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.IRIE,T.SHIMOMURA,Y.FUJIYOSHI REVDAT 3 22-NOV-23 5YUB 1 REMARK REVDAT 2 17-JAN-18 5YUB 1 JRNL REVDAT 1 27-DEC-17 5YUB 0 JRNL AUTH K.IRIE,Y.HAGA,T.SHIMOMURA,Y.FUJIYOSHI JRNL TITL STRUCTURAL INSIGHT ON THE VOLTAGE DEPENDENCE OF PROKARYOTIC JRNL TITL 2 VOLTAGE GATED SODIUM CHANNEL NAVAB. JRNL REF FEBS LETT. 2017 JRNL REFN ISSN 1873-3468 JRNL PMID 29274127 JRNL DOI 10.1002/1873-3468.12955 REMARK 2 REMARK 2 RESOLUTION. 3.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.06 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.378 REMARK 3 COMPLETENESS FOR RANGE (%) : 86.5 REMARK 3 NUMBER OF REFLECTIONS : 10201 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.244 REMARK 3 R VALUE (WORKING SET) : 0.241 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.999 REMARK 3 FREE R VALUE TEST SET COUNT : 1020 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.0646 - 6.4967 0.98 1587 177 0.2634 0.2982 REMARK 3 2 6.4967 - 5.1598 1.00 1533 170 0.2968 0.2993 REMARK 3 3 5.1598 - 4.5085 1.00 1498 166 0.2137 0.2470 REMARK 3 4 4.5085 - 4.0967 1.00 1495 167 0.2258 0.2521 REMARK 3 5 4.0967 - 3.8033 1.00 1498 167 0.2278 0.2653 REMARK 3 6 3.8033 - 3.5792 0.80 1182 131 0.2281 0.2751 REMARK 3 7 3.5792 - 3.4000 0.26 388 42 0.2364 0.2996 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.288 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.447 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.31 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 61.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 1985 REMARK 3 ANGLE : 1.171 2705 REMARK 3 CHIRALITY : 0.065 335 REMARK 3 PLANARITY : 0.006 310 REMARK 3 DIHEDRAL : 19.023 703 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 999 THROUGH 1112 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.4986 -22.8864 27.8719 REMARK 3 T TENSOR REMARK 3 T11: 0.7624 T22: 0.8985 REMARK 3 T33: 0.6619 T12: 0.4359 REMARK 3 T13: -0.1662 T23: 0.0463 REMARK 3 L TENSOR REMARK 3 L11: 3.2389 L22: 5.7217 REMARK 3 L33: 3.5833 L12: -0.3317 REMARK 3 L13: 0.8083 L23: -3.9344 REMARK 3 S TENSOR REMARK 3 S11: 0.1278 S12: 0.1327 S13: -0.4125 REMARK 3 S21: -0.2207 S22: -0.1129 S23: -0.5849 REMARK 3 S31: 1.1812 S32: 0.9108 S33: 0.0143 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1113 THROUGH 1227 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.0751 -12.2005 23.3516 REMARK 3 T TENSOR REMARK 3 T11: 0.3864 T22: 0.3075 REMARK 3 T33: 0.2309 T12: -0.0829 REMARK 3 T13: 0.0990 T23: 0.0464 REMARK 3 L TENSOR REMARK 3 L11: 3.6291 L22: 2.3795 REMARK 3 L33: 1.7406 L12: -0.1789 REMARK 3 L13: 0.3632 L23: -0.8034 REMARK 3 S TENSOR REMARK 3 S11: -0.1059 S12: -0.5208 S13: -0.0287 REMARK 3 S21: 0.3327 S22: -0.0682 S23: 0.0539 REMARK 3 S31: 0.1783 S32: -0.2502 S33: 0.1111 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5YUB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 29-NOV-17. REMARK 100 THE DEPOSITION ID IS D_1300005904. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-NOV-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL32XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11773 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.400 REMARK 200 RESOLUTION RANGE LOW (A) : 41.070 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 86.4 REMARK 200 DATA REDUNDANCY : 13.90 REMARK 200 R MERGE (I) : 0.24300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.8600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.52 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.92400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5YUA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 81.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 6.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% POLYETHYLENE GLYCOL MONOMETHYL REMARK 280 ETHER 2000, 100 MM NACL, 100 MM CALCIUM NITRATE, 100 MM TRIS-HCL, REMARK 280 PH 8, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 63.52000 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 63.52000 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 101.32000 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 63.52000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 63.52000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 101.32000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 63.52000 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 63.52000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 101.32000 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 63.52000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 63.52000 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 101.32000 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 63.52000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 63.52000 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 101.32000 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 63.52000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 63.52000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 101.32000 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 63.52000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 63.52000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 101.32000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 63.52000 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 63.52000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 101.32000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 19680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 45920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -201.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CA CA A1301 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 997 REMARK 465 SER A 998 REMARK 465 GLU A 1228 REMARK 465 GLU A 1229 REMARK 465 GLN A 1230 REMARK 465 HIS A 1231 REMARK 465 ILE A 1232 REMARK 465 ILE A 1233 REMARK 465 ASP A 1234 REMARK 465 GLU A 1235 REMARK 465 VAL A 1236 REMARK 465 GLN A 1237 REMARK 465 SER A 1238 REMARK 465 HIS A 1239 REMARK 465 GLU A 1240 REMARK 465 ASP A 1241 REMARK 465 ASN A 1242 REMARK 465 ILE A 1243 REMARK 465 ASN A 1244 REMARK 465 ASN A 1245 REMARK 465 GLU A 1246 REMARK 465 ILE A 1247 REMARK 465 ILE A 1248 REMARK 465 LYS A 1249 REMARK 465 LEU A 1250 REMARK 465 ARG A 1251 REMARK 465 GLU A 1252 REMARK 465 GLU A 1253 REMARK 465 ILE A 1254 REMARK 465 VAL A 1255 REMARK 465 GLU A 1256 REMARK 465 LEU A 1257 REMARK 465 LYS A 1258 REMARK 465 GLU A 1259 REMARK 465 LEU A 1260 REMARK 465 ILE A 1261 REMARK 465 LYS A 1262 REMARK 465 THR A 1263 REMARK 465 SER A 1264 REMARK 465 LEU A 1265 REMARK 465 LYS A 1266 REMARK 465 ASN A 1267 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A1227 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NE2 GLN A 1172 OG SER A 1180 3555 1.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A1068 -123.30 41.28 REMARK 500 MET A1130 2.79 -67.04 REMARK 500 SER A1180 -77.13 -103.83 REMARK 500 ILE A1183 -66.09 -107.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 1N7 A 1303 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LMT A 1302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1N7 A 1303 DBREF1 5YUB A 1001 1267 UNP A0A239WB15_9PROT DBREF2 5YUB A A0A239WB15 1 267 SEQADV 5YUB GLY A 997 UNP A0A239WB1 EXPRESSION TAG SEQADV 5YUB SER A 998 UNP A0A239WB1 EXPRESSION TAG SEQADV 5YUB GLY A 999 UNP A0A239WB1 EXPRESSION TAG SEQADV 5YUB SER A 1000 UNP A0A239WB1 EXPRESSION TAG SEQADV 5YUB GLN A 1032 UNP A0A239WB1 GLU 32 ENGINEERED MUTATION SEQRES 1 A 271 GLY SER GLY SER MET TYR LEU ARG ILE THR ASN ILE VAL SEQRES 2 A 271 GLU SER SER PHE PHE THR LYS PHE ILE ILE TYR LEU ILE SEQRES 3 A 271 VAL LEU ASN GLY ILE THR MET GLY LEU GLN THR SER LYS SEQRES 4 A 271 THR PHE MET GLN SER PHE GLY VAL TYR THR THR LEU PHE SEQRES 5 A 271 ASN GLN ILE VAL ILE THR ILE PHE THR ILE GLU ILE ILE SEQRES 6 A 271 LEU ARG ILE TYR VAL HIS ARG ILE SER PHE PHE LYS ASP SEQRES 7 A 271 PRO TRP SER LEU PHE ASP PHE PHE VAL VAL ALA ILE SER SEQRES 8 A 271 LEU VAL PRO THR SER SER GLY PHE GLU ILE LEU ARG VAL SEQRES 9 A 271 LEU ARG VAL LEU ARG LEU PHE ARG LEU VAL THR ALA VAL SEQRES 10 A 271 PRO GLN MET ARG LYS ILE VAL SER ALA LEU ILE SER VAL SEQRES 11 A 271 ILE PRO GLY MET LEU SER VAL ILE ALA LEU MET THR LEU SEQRES 12 A 271 PHE PHE TYR ILE PHE ALA ILE MET ALA THR GLN LEU PHE SEQRES 13 A 271 GLY GLU ARG PHE PRO GLU TRP PHE GLY THR LEU GLY GLU SEQRES 14 A 271 SER PHE TYR THR LEU PHE GLN VAL MET THR LEU GLU SER SEQRES 15 A 271 TRP SER MET GLY ILE VAL ARG PRO LEU MET GLU VAL TYR SEQRES 16 A 271 PRO TYR ALA TRP VAL PHE PHE ILE PRO PHE ILE PHE VAL SEQRES 17 A 271 VAL THR PHE VAL MET ILE ASN LEU VAL VAL ALA ILE ILE SEQRES 18 A 271 VAL ASP ALA MET ALA ILE LEU ASN GLN LYS GLU GLU GLN SEQRES 19 A 271 HIS ILE ILE ASP GLU VAL GLN SER HIS GLU ASP ASN ILE SEQRES 20 A 271 ASN ASN GLU ILE ILE LYS LEU ARG GLU GLU ILE VAL GLU SEQRES 21 A 271 LEU LYS GLU LEU ILE LYS THR SER LEU LYS ASN HET CA A1301 1 HET LMT A1302 35 HET 1N7 A1303 30 HETNAM CA CALCIUM ION HETNAM LMT DODECYL-BETA-D-MALTOSIDE HETNAM 1N7 CHAPSO HETSYN 1N7 2-HYDROXY-N,N-DIMETHYL-3-SULFO-N-(3-{[(3BETA,5BETA, HETSYN 2 1N7 7BETA,12BETA)-3,7,12-TRIHYDROXY-24-OXOCHOLAN-24- HETSYN 3 1N7 YL]AMINO}PROPYL)PROPAN-1-AMINIUM FORMUL 2 CA CA 2+ FORMUL 3 LMT C24 H46 O11 FORMUL 4 1N7 C32 H59 N2 O8 S 1+ HELIX 1 AA1 GLY A 999 GLU A 1010 1 12 HELIX 2 AA2 SER A 1011 GLN A 1032 1 22 HELIX 3 AA3 SER A 1034 HIS A 1067 1 34 HELIX 4 AA4 ARG A 1068 LYS A 1073 5 6 HELIX 5 AA5 ASP A 1074 VAL A 1089 1 16 HELIX 6 AA6 GLU A 1096 ARG A 1102 1 7 HELIX 7 AA7 VAL A 1103 LEU A 1106 5 4 HELIX 8 AA8 PHE A 1107 VAL A 1113 1 7 HELIX 9 AA9 VAL A 1113 VAL A 1126 1 14 HELIX 10 AB1 MET A 1130 GLY A 1153 1 24 HELIX 11 AB2 PHE A 1156 GLY A 1161 1 6 HELIX 12 AB3 THR A 1162 THR A 1175 1 14 HELIX 13 AB4 ILE A 1183 MET A 1188 1 6 HELIX 14 AB5 GLU A 1189 VAL A 1190 5 2 HELIX 15 AB6 TYR A 1191 TYR A 1193 5 3 HELIX 16 AB7 ALA A 1194 LYS A 1227 1 34 SITE 1 AC1 5 MET A1130 MET A1174 LEU A1176 THR A1206 SITE 2 AC1 5 MET A1209 SITE 1 AC2 4 PRO A1128 GLY A1129 LEU A1131 SER A1132 CRYST1 127.040 127.040 202.640 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007872 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007872 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004935 0.00000