HEADER STRUCTURAL PROTEIN 22-NOV-17 5YUG TITLE ATVAL1 PHD-LIKE DOMAIN IN THE P31 SPACE GROUP COMPND MOL_ID: 1; COMPND 2 MOLECULE: B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1; COMPND 3 CHAIN: A, B, E, G; COMPND 4 FRAGMENT: PHD-LIKE DOMAIN; COMPND 5 SYNONYM: PROTEIN HIGH-LEVEL EXPRESSION OF SUGAR-INDUCIBLE 2,PROTEIN COMPND 6 VP1/ABI3-LIKE 1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: VAL1, HSI2, AT2G30470, T6B20.17; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS H3K27ME3, PHD, VAL1, PHD-LIKE DOMAIN, HISTONE MODIFICATION, KEYWDS 2 STRUCTURAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.M.ZHANG,B.X.WU REVDAT 3 27-MAR-24 5YUG 1 REMARK REVDAT 2 20-FEB-19 5YUG 1 TITLE SOURCE JRNL REVDAT 1 02-MAY-18 5YUG 0 JRNL AUTH M.M.ZHANG,B.X.WU JRNL TITL ATVAL1 PHD-LIKE DOMAIN IN THE P31 SPACE GROUP JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.57 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.57 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.11 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.980 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 51702 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 2595 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 26.1176 - 4.1834 1.00 2606 130 0.2091 0.2059 REMARK 3 2 4.1834 - 3.3226 1.00 2613 126 0.2163 0.2591 REMARK 3 3 3.3226 - 2.9033 1.00 2590 118 0.2427 0.2825 REMARK 3 4 2.9033 - 2.6381 1.00 2615 122 0.2334 0.2823 REMARK 3 5 2.6381 - 2.4492 1.00 2571 166 0.2439 0.2547 REMARK 3 6 2.4492 - 2.3048 1.00 2630 92 0.2367 0.2654 REMARK 3 7 2.3048 - 2.1895 1.00 2572 136 0.2324 0.3033 REMARK 3 8 2.1895 - 2.0942 1.00 2591 110 0.2165 0.2801 REMARK 3 9 2.0942 - 2.0136 1.00 2624 148 0.2192 0.2323 REMARK 3 10 2.0136 - 1.9442 1.00 2546 144 0.2156 0.2542 REMARK 3 11 1.9442 - 1.8834 1.00 2591 169 0.2263 0.2940 REMARK 3 12 1.8834 - 1.8296 1.00 2582 178 0.2016 0.2222 REMARK 3 13 1.8296 - 1.7814 1.00 2585 140 0.2092 0.2391 REMARK 3 14 1.7814 - 1.7380 1.00 2556 134 0.2015 0.2644 REMARK 3 15 1.7380 - 1.6985 1.00 2596 140 0.1872 0.1922 REMARK 3 16 1.6985 - 1.6623 1.00 2613 153 0.1963 0.2351 REMARK 3 17 1.6623 - 1.6291 1.00 2539 152 0.1967 0.2351 REMARK 3 18 1.6291 - 1.5983 1.00 2646 130 0.2049 0.2920 REMARK 3 19 1.5983 - 1.5698 0.93 2441 107 0.2078 0.2504 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.790 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3033 REMARK 3 ANGLE : 0.915 4070 REMARK 3 CHIRALITY : 0.050 429 REMARK 3 PLANARITY : 0.005 509 REMARK 3 DIHEDRAL : 15.188 1792 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5YUG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-NOV-17. REMARK 100 THE DEPOSITION ID IS D_1300005936. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-NOV-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97737 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51823 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.570 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 10.30 REMARK 200 R MERGE (I) : 0.14200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.57 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXCD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM CITRATE TRIBASIC PH 7.0, REMARK 280 20% W/V POLYETHYLENE GLYCOL 3350, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.55800 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 81.11600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 52.22800 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2810 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10760 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PHE A 2 REMARK 465 GLU A 3 REMARK 465 VAL A 4 REMARK 465 LYS A 5 REMARK 465 MET A 6 REMARK 465 GLY A 7 REMARK 465 HIS A 100 REMARK 465 GLN A 101 REMARK 465 LEU A 102 REMARK 465 ASN A 103 REMARK 465 LEU A 104 REMARK 465 ASN A 105 REMARK 465 THR A 106 REMARK 465 ARG A 107 REMARK 465 GLY A 108 REMARK 465 GLU A 109 REMARK 465 ASN A 110 REMARK 465 MET B 1 REMARK 465 PHE B 2 REMARK 465 GLU B 3 REMARK 465 VAL B 4 REMARK 465 LYS B 5 REMARK 465 MET B 6 REMARK 465 GLY B 7 REMARK 465 HIS B 100 REMARK 465 GLN B 101 REMARK 465 LEU B 102 REMARK 465 ASN B 103 REMARK 465 LEU B 104 REMARK 465 ASN B 105 REMARK 465 THR B 106 REMARK 465 ARG B 107 REMARK 465 GLY B 108 REMARK 465 GLU B 109 REMARK 465 ASN B 110 REMARK 465 MET E 1 REMARK 465 PHE E 2 REMARK 465 GLU E 3 REMARK 465 VAL E 4 REMARK 465 LYS E 5 REMARK 465 MET E 6 REMARK 465 GLY E 7 REMARK 465 SER E 8 REMARK 465 MET G 1 REMARK 465 PHE G 2 REMARK 465 GLU G 3 REMARK 465 VAL G 4 REMARK 465 LYS G 5 REMARK 465 MET G 6 REMARK 465 GLY G 7 REMARK 465 SER G 8 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 336 O HOH B 339 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 16 -68.72 -104.99 REMARK 500 CYS B 16 -68.33 -105.05 REMARK 500 CYS E 16 -73.74 -117.82 REMARK 500 ARG E 107 16.47 -145.90 REMARK 500 CYS G 16 -73.26 -117.75 REMARK 500 ARG G 107 16.19 -145.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 203 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 11 SG REMARK 620 2 CYS A 16 SG 111.8 REMARK 620 3 CYS A 39 SG 115.5 112.4 REMARK 620 4 CYS A 42 SG 105.4 110.9 99.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 52 SG REMARK 620 2 HIS A 56 ND1 110.9 REMARK 620 3 HIS A 73 ND1 118.1 101.1 REMARK 620 4 CYS A 76 SG 110.9 104.3 110.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 65 SG REMARK 620 2 CYS A 68 SG 112.0 REMARK 620 3 CYS A 93 SG 102.3 103.8 REMARK 620 4 CYS A 96 SG 108.6 114.4 115.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 203 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 11 SG REMARK 620 2 CYS B 16 SG 112.6 REMARK 620 3 CYS B 39 SG 115.0 112.4 REMARK 620 4 CYS B 42 SG 105.2 110.4 100.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 52 SG REMARK 620 2 HIS B 56 ND1 112.3 REMARK 620 3 HIS B 73 ND1 118.4 100.6 REMARK 620 4 CYS B 76 SG 111.1 102.8 110.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 65 SG REMARK 620 2 CYS B 68 SG 112.1 REMARK 620 3 CYS B 93 SG 103.3 103.8 REMARK 620 4 CYS B 96 SG 108.0 114.6 114.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN E 203 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS E 11 SG REMARK 620 2 CYS E 16 SG 111.5 REMARK 620 3 CYS E 39 SG 114.1 113.0 REMARK 620 4 CYS E 42 SG 106.5 112.7 98.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN E 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS E 52 SG REMARK 620 2 HIS E 56 ND1 110.5 REMARK 620 3 HIS E 73 ND1 116.0 106.6 REMARK 620 4 CYS E 76 SG 112.5 101.4 108.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN E 202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS E 65 SG REMARK 620 2 CYS E 68 SG 109.4 REMARK 620 3 CYS E 93 SG 113.6 111.4 REMARK 620 4 CYS E 96 SG 104.8 111.0 106.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN G 203 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS G 11 SG REMARK 620 2 CYS G 16 SG 111.3 REMARK 620 3 CYS G 39 SG 114.6 113.1 REMARK 620 4 CYS G 42 SG 105.8 112.6 98.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN G 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS G 52 SG REMARK 620 2 HIS G 56 ND1 109.5 REMARK 620 3 HIS G 73 ND1 115.5 106.0 REMARK 620 4 CYS G 76 SG 112.9 102.3 109.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN G 202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS G 65 SG REMARK 620 2 CYS G 68 SG 109.8 REMARK 620 3 CYS G 93 SG 113.6 110.8 REMARK 620 4 CYS G 96 SG 105.5 110.9 106.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN E 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN E 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN E 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN G 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN G 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN G 203 DBREF 5YUG A 1 110 UNP Q8W4L5 VAL1_ARATH 1 110 DBREF 5YUG B 1 110 UNP Q8W4L5 VAL1_ARATH 1 110 DBREF 5YUG E 1 110 UNP Q8W4L5 VAL1_ARATH 1 110 DBREF 5YUG G 1 110 UNP Q8W4L5 VAL1_ARATH 1 110 SEQRES 1 A 110 MET PHE GLU VAL LYS MET GLY SER LYS MET CYS MET ASN SEQRES 2 A 110 ALA SER CYS GLY THR THR SER THR VAL GLU TRP LYS LYS SEQRES 3 A 110 GLY TRP PRO LEU ARG SER GLY LEU LEU ALA ASP LEU CYS SEQRES 4 A 110 TYR ARG CYS GLY SER ALA TYR GLU SER SER LEU PHE CYS SEQRES 5 A 110 GLU GLN PHE HIS LYS ASP GLN SER GLY TRP ARG GLU CYS SEQRES 6 A 110 TYR LEU CYS SER LYS ARG LEU HIS CYS GLY CYS ILE ALA SEQRES 7 A 110 SER LYS VAL THR ILE GLU LEU MET ASP TYR GLY GLY VAL SEQRES 8 A 110 GLY CYS SER THR CYS ALA CYS CYS HIS GLN LEU ASN LEU SEQRES 9 A 110 ASN THR ARG GLY GLU ASN SEQRES 1 B 110 MET PHE GLU VAL LYS MET GLY SER LYS MET CYS MET ASN SEQRES 2 B 110 ALA SER CYS GLY THR THR SER THR VAL GLU TRP LYS LYS SEQRES 3 B 110 GLY TRP PRO LEU ARG SER GLY LEU LEU ALA ASP LEU CYS SEQRES 4 B 110 TYR ARG CYS GLY SER ALA TYR GLU SER SER LEU PHE CYS SEQRES 5 B 110 GLU GLN PHE HIS LYS ASP GLN SER GLY TRP ARG GLU CYS SEQRES 6 B 110 TYR LEU CYS SER LYS ARG LEU HIS CYS GLY CYS ILE ALA SEQRES 7 B 110 SER LYS VAL THR ILE GLU LEU MET ASP TYR GLY GLY VAL SEQRES 8 B 110 GLY CYS SER THR CYS ALA CYS CYS HIS GLN LEU ASN LEU SEQRES 9 B 110 ASN THR ARG GLY GLU ASN SEQRES 1 E 110 MET PHE GLU VAL LYS MET GLY SER LYS MET CYS MET ASN SEQRES 2 E 110 ALA SER CYS GLY THR THR SER THR VAL GLU TRP LYS LYS SEQRES 3 E 110 GLY TRP PRO LEU ARG SER GLY LEU LEU ALA ASP LEU CYS SEQRES 4 E 110 TYR ARG CYS GLY SER ALA TYR GLU SER SER LEU PHE CYS SEQRES 5 E 110 GLU GLN PHE HIS LYS ASP GLN SER GLY TRP ARG GLU CYS SEQRES 6 E 110 TYR LEU CYS SER LYS ARG LEU HIS CYS GLY CYS ILE ALA SEQRES 7 E 110 SER LYS VAL THR ILE GLU LEU MET ASP TYR GLY GLY VAL SEQRES 8 E 110 GLY CYS SER THR CYS ALA CYS CYS HIS GLN LEU ASN LEU SEQRES 9 E 110 ASN THR ARG GLY GLU ASN SEQRES 1 G 110 MET PHE GLU VAL LYS MET GLY SER LYS MET CYS MET ASN SEQRES 2 G 110 ALA SER CYS GLY THR THR SER THR VAL GLU TRP LYS LYS SEQRES 3 G 110 GLY TRP PRO LEU ARG SER GLY LEU LEU ALA ASP LEU CYS SEQRES 4 G 110 TYR ARG CYS GLY SER ALA TYR GLU SER SER LEU PHE CYS SEQRES 5 G 110 GLU GLN PHE HIS LYS ASP GLN SER GLY TRP ARG GLU CYS SEQRES 6 G 110 TYR LEU CYS SER LYS ARG LEU HIS CYS GLY CYS ILE ALA SEQRES 7 G 110 SER LYS VAL THR ILE GLU LEU MET ASP TYR GLY GLY VAL SEQRES 8 G 110 GLY CYS SER THR CYS ALA CYS CYS HIS GLN LEU ASN LEU SEQRES 9 G 110 ASN THR ARG GLY GLU ASN HET ZN A 201 1 HET ZN A 202 1 HET ZN A 203 1 HET GOL A 204 6 HET ZN B 201 1 HET ZN B 202 1 HET ZN B 203 1 HET GOL B 204 6 HET ZN E 201 1 HET ZN E 202 1 HET ZN E 203 1 HET ZN G 201 1 HET ZN G 202 1 HET ZN G 203 1 HETNAM ZN ZINC ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 ZN 12(ZN 2+) FORMUL 8 GOL 2(C3 H8 O3) FORMUL 19 HOH *139(H2 O) HELIX 1 AA1 CYS A 39 SER A 48 1 10 HELIX 2 AA2 LEU A 50 HIS A 56 1 7 HELIX 3 AA3 CYS A 76 VAL A 81 5 6 HELIX 4 AA4 SER A 94 CYS A 98 1 5 HELIX 5 AA5 CYS B 39 SER B 48 1 10 HELIX 6 AA6 LEU B 50 HIS B 56 1 7 HELIX 7 AA7 CYS B 76 VAL B 81 5 6 HELIX 8 AA8 SER B 94 CYS B 98 1 5 HELIX 9 AA9 CYS E 39 SER E 48 1 10 HELIX 10 AB1 LEU E 50 HIS E 56 1 7 HELIX 11 AB2 CYS E 76 ILE E 83 5 8 HELIX 12 AB3 THR E 95 CYS E 99 5 5 HELIX 13 AB4 CYS G 39 SER G 48 1 10 HELIX 14 AB5 LEU G 50 HIS G 56 1 7 HELIX 15 AB6 CYS G 76 ILE G 83 5 8 HELIX 16 AB7 THR G 95 CYS G 99 5 5 SHEET 1 AA1 2 LYS A 25 PRO A 29 0 SHEET 2 AA1 2 LEU A 35 LEU A 38 -1 O LEU A 38 N LYS A 25 SHEET 1 AA2 2 TRP A 62 GLU A 64 0 SHEET 2 AA2 2 ARG A 71 HIS A 73 -1 O LEU A 72 N ARG A 63 SHEET 1 AA3 2 ILE A 83 LEU A 85 0 SHEET 2 AA3 2 VAL A 91 CYS A 93 -1 O GLY A 92 N GLU A 84 SHEET 1 AA4 2 LYS B 25 PRO B 29 0 SHEET 2 AA4 2 LEU B 35 LEU B 38 -1 O LEU B 38 N LYS B 25 SHEET 1 AA5 2 TRP B 62 GLU B 64 0 SHEET 2 AA5 2 ARG B 71 HIS B 73 -1 O LEU B 72 N ARG B 63 SHEET 1 AA6 2 ILE B 83 LEU B 85 0 SHEET 2 AA6 2 VAL B 91 CYS B 93 -1 O GLY B 92 N GLU B 84 SHEET 1 AA7 2 LYS E 25 PRO E 29 0 SHEET 2 AA7 2 LEU E 35 LEU E 38 -1 O LEU E 38 N LYS E 25 SHEET 1 AA8 2 TRP E 62 GLU E 64 0 SHEET 2 AA8 2 ARG E 71 HIS E 73 -1 O LEU E 72 N ARG E 63 SHEET 1 AA9 2 GLU E 84 LEU E 85 0 SHEET 2 AA9 2 VAL E 91 GLY E 92 -1 O GLY E 92 N GLU E 84 SHEET 1 AB1 2 LYS G 25 PRO G 29 0 SHEET 2 AB1 2 LEU G 35 LEU G 38 -1 O LEU G 38 N LYS G 25 SHEET 1 AB2 2 TRP G 62 GLU G 64 0 SHEET 2 AB2 2 ARG G 71 HIS G 73 -1 O LEU G 72 N ARG G 63 SHEET 1 AB3 2 GLU G 84 LEU G 85 0 SHEET 2 AB3 2 VAL G 91 GLY G 92 -1 O GLY G 92 N GLU G 84 LINK SG CYS A 11 ZN ZN A 203 1555 1555 2.29 LINK SG CYS A 16 ZN ZN A 203 1555 1555 2.29 LINK SG CYS A 39 ZN ZN A 203 1555 1555 2.33 LINK SG CYS A 42 ZN ZN A 203 1555 1555 2.36 LINK SG CYS A 52 ZN ZN A 201 1555 1555 2.27 LINK ND1 HIS A 56 ZN ZN A 201 1555 1555 2.08 LINK SG CYS A 65 ZN ZN A 202 1555 1555 2.35 LINK SG CYS A 68 ZN ZN A 202 1555 1555 2.30 LINK ND1 HIS A 73 ZN ZN A 201 1555 1555 2.11 LINK SG CYS A 76 ZN ZN A 201 1555 1555 2.26 LINK SG CYS A 93 ZN ZN A 202 1555 1555 2.44 LINK SG CYS A 96 ZN ZN A 202 1555 1555 2.28 LINK SG CYS B 11 ZN ZN B 203 1555 1555 2.31 LINK SG CYS B 16 ZN ZN B 203 1555 1555 2.31 LINK SG CYS B 39 ZN ZN B 203 1555 1555 2.35 LINK SG CYS B 42 ZN ZN B 203 1555 1555 2.38 LINK SG CYS B 52 ZN ZN B 201 1555 1555 2.25 LINK ND1 HIS B 56 ZN ZN B 201 1555 1555 2.10 LINK SG CYS B 65 ZN ZN B 202 1555 1555 2.35 LINK SG CYS B 68 ZN ZN B 202 1555 1555 2.27 LINK ND1 HIS B 73 ZN ZN B 201 1555 1555 2.08 LINK SG CYS B 76 ZN ZN B 201 1555 1555 2.28 LINK SG CYS B 93 ZN ZN B 202 1555 1555 2.42 LINK SG CYS B 96 ZN ZN B 202 1555 1555 2.30 LINK SG CYS E 11 ZN ZN E 203 1555 1555 2.30 LINK SG CYS E 16 ZN ZN E 203 1555 1555 2.38 LINK SG CYS E 39 ZN ZN E 203 1555 1555 2.39 LINK SG CYS E 42 ZN ZN E 203 1555 1555 2.34 LINK SG CYS E 52 ZN ZN E 201 1555 1555 2.25 LINK ND1 HIS E 56 ZN ZN E 201 1555 1555 2.11 LINK SG CYS E 65 ZN ZN E 202 1555 1555 2.36 LINK SG CYS E 68 ZN ZN E 202 1555 1555 2.32 LINK ND1 HIS E 73 ZN ZN E 201 1555 1555 2.05 LINK SG CYS E 76 ZN ZN E 201 1555 1555 2.23 LINK SG CYS E 93 ZN ZN E 202 1555 1555 2.27 LINK SG CYS E 96 ZN ZN E 202 1555 1555 2.27 LINK SG CYS G 11 ZN ZN G 203 1555 1555 2.33 LINK SG CYS G 16 ZN ZN G 203 1555 1555 2.34 LINK SG CYS G 39 ZN ZN G 203 1555 1555 2.38 LINK SG CYS G 42 ZN ZN G 203 1555 1555 2.37 LINK SG CYS G 52 ZN ZN G 201 1555 1555 2.28 LINK ND1 HIS G 56 ZN ZN G 201 1555 1555 2.08 LINK SG CYS G 65 ZN ZN G 202 1555 1555 2.31 LINK SG CYS G 68 ZN ZN G 202 1555 1555 2.37 LINK ND1 HIS G 73 ZN ZN G 201 1555 1555 2.06 LINK SG CYS G 76 ZN ZN G 201 1555 1555 2.22 LINK SG CYS G 93 ZN ZN G 202 1555 1555 2.27 LINK SG CYS G 96 ZN ZN G 202 1555 1555 2.29 SITE 1 AC1 4 CYS A 52 HIS A 56 HIS A 73 CYS A 76 SITE 1 AC2 4 CYS A 65 CYS A 68 CYS A 93 CYS A 96 SITE 1 AC3 4 CYS A 11 CYS A 16 CYS A 39 CYS A 42 SITE 1 AC4 8 TYR A 46 SER A 49 LEU A 50 PHE A 51 SITE 2 AC4 8 CYS A 52 GLU A 53 ALA A 78 SER A 79 SITE 1 AC5 4 CYS B 52 HIS B 56 HIS B 73 CYS B 76 SITE 1 AC6 4 CYS B 65 CYS B 68 CYS B 93 CYS B 96 SITE 1 AC7 4 CYS B 11 CYS B 16 CYS B 39 CYS B 42 SITE 1 AC8 8 TYR B 46 SER B 49 LEU B 50 PHE B 51 SITE 2 AC8 8 CYS B 52 GLU B 53 ALA B 78 SER B 79 SITE 1 AC9 4 CYS E 52 HIS E 56 HIS E 73 CYS E 76 SITE 1 AD1 4 CYS E 65 CYS E 68 CYS E 93 CYS E 96 SITE 1 AD2 4 CYS E 11 CYS E 16 CYS E 39 CYS E 42 SITE 1 AD3 4 CYS G 52 HIS G 56 HIS G 73 CYS G 76 SITE 1 AD4 4 CYS G 65 CYS G 68 CYS G 93 CYS G 96 SITE 1 AD5 4 CYS G 11 CYS G 16 CYS G 39 CYS G 42 CRYST1 52.228 52.228 121.674 90.00 90.00 120.00 P 31 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019147 0.011054 0.000000 0.00000 SCALE2 0.000000 0.022109 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008219 0.00000