HEADER DNA BINDING PROTEIN 22-NOV-17 5YUN TITLE CRYSTAL STRUCTURE OF SSB COMPLEXED WITH MYC COMPND MOL_ID: 1; COMPND 2 MOLECULE: SINGLE-STRANDED DNA-BINDING PROTEIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: SSB; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA (STRAIN ATCC 15692 / DSM SOURCE 3 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1); SOURCE 4 ORGANISM_TAXID: 208964; SOURCE 5 STRAIN: ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 SOURCE 6 / 1C / PRS 101 / PAO1; SOURCE 7 GENE: SSB, PA4232; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 511693 KEYWDS SINGLE-STRAND DNA BINDING PROTEIN, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.H.HUANG,C.Y.HUANG REVDAT 3 22-NOV-23 5YUN 1 REMARK REVDAT 2 17-OCT-18 5YUN 1 COMPND JRNL REVDAT 1 10-OCT-18 5YUN 0 JRNL AUTH C.Y.HUANG JRNL TITL CRYSTAL STRUCTURE OF SSB COMPLEXED WITH INHIBITOR MYRICETIN. JRNL REF BIOCHEM. BIOPHYS. RES. V. 504 704 2018 JRNL REF 2 COMMUN. JRNL REFN ESSN 1090-2104 JRNL PMID 30213633 JRNL DOI 10.1016/J.BBRC.2018.08.188 REMARK 2 REMARK 2 RESOLUTION. 2.67 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.67 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 14163 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 755 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.67 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1009 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.22 REMARK 3 BIN R VALUE (WORKING SET) : 0.2910 REMARK 3 BIN FREE R VALUE SET COUNT : 63 REMARK 3 BIN FREE R VALUE : 0.3510 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3246 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 46 REMARK 3 SOLVENT ATOMS : 18 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 69.67 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.61000 REMARK 3 B22 (A**2) : -0.61000 REMARK 3 B33 (A**2) : 1.97000 REMARK 3 B12 (A**2) : -0.30000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.070 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.338 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.273 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.081 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.892 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3348 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3126 ; 0.006 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4532 ; 1.617 ; 1.946 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7112 ; 1.259 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 403 ; 6.999 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 173 ;35.750 ;23.757 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 556 ;18.772 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 34 ;20.307 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 482 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3875 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 833 ; 0.005 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1636 ; 5.540 ; 6.575 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1635 ; 5.540 ; 6.575 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2031 ; 8.581 ; 9.815 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2032 ; 8.579 ; 9.815 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1712 ; 5.918 ; 7.560 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1713 ; 5.916 ; 7.565 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2501 ; 9.187 ;11.080 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3641 ;13.995 ;58.662 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3642 ;13.999 ;58.682 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 6 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 4 114 B 4 114 5424 0.13 0.05 REMARK 3 2 A 4 113 C 4 113 5553 0.11 0.05 REMARK 3 3 A 4 111 D 4 111 5280 0.12 0.05 REMARK 3 4 B 4 112 C 4 112 5426 0.12 0.05 REMARK 3 5 B 4 111 D 4 111 5286 0.12 0.05 REMARK 3 6 C 3 111 D 3 111 5342 0.12 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5YUN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 29-NOV-17. REMARK 100 THE DEPOSITION ID IS D_1300005864. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-NOV-17 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL13C1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.975 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14947 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.670 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 2.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.2900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.67 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.78 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1EYG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25%PEG4000, 100MM MES SODIUM SALT, REMARK 280 200MM MAGNESIUM CHLORIDE, PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.62267 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 87.24533 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7530 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ARG A 3 REMARK 465 LYS A 41 REMARK 465 ASP A 42 REMARK 465 LYS A 43 REMARK 465 GLN A 44 REMARK 465 THR A 45 REMARK 465 GLY A 46 REMARK 465 GLN A 47 REMARK 465 ARG A 115 REMARK 465 HIS A 116 REMARK 465 HIS A 117 REMARK 465 HIS A 118 REMARK 465 HIS A 119 REMARK 465 HIS A 120 REMARK 465 HIS A 121 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 ARG B 3 REMARK 465 LYS B 41 REMARK 465 ASP B 42 REMARK 465 LYS B 43 REMARK 465 GLN B 44 REMARK 465 THR B 45 REMARK 465 GLY B 46 REMARK 465 GLN B 47 REMARK 465 GLN B 48 REMARK 465 ARG B 115 REMARK 465 HIS B 116 REMARK 465 HIS B 117 REMARK 465 HIS B 118 REMARK 465 HIS B 119 REMARK 465 HIS B 120 REMARK 465 HIS B 121 REMARK 465 MET C 1 REMARK 465 ALA C 2 REMARK 465 LYS C 41 REMARK 465 ASP C 42 REMARK 465 LYS C 43 REMARK 465 GLN C 44 REMARK 465 THR C 45 REMARK 465 GLY C 46 REMARK 465 GLN C 47 REMARK 465 GLN C 48 REMARK 465 GLN C 49 REMARK 465 GLY C 114 REMARK 465 ARG C 115 REMARK 465 HIS C 116 REMARK 465 HIS C 117 REMARK 465 HIS C 118 REMARK 465 HIS C 119 REMARK 465 HIS C 120 REMARK 465 HIS C 121 REMARK 465 MET D 1 REMARK 465 LYS D 41 REMARK 465 ASP D 42 REMARK 465 LYS D 43 REMARK 465 GLN D 44 REMARK 465 THR D 45 REMARK 465 GLY D 46 REMARK 465 GLN D 47 REMARK 465 GLN D 48 REMARK 465 GLN D 49 REMARK 465 GLY D 113 REMARK 465 GLY D 114 REMARK 465 ARG D 115 REMARK 465 HIS D 116 REMARK 465 HIS D 117 REMARK 465 HIS D 118 REMARK 465 HIS D 119 REMARK 465 HIS D 120 REMARK 465 HIS D 121 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN B 25 N ASN B 27 1.72 REMARK 500 O ILE B 105 C14 MYC B 201 1.94 REMARK 500 O ILE B 105 C19 MYC B 201 1.95 REMARK 500 O GLY C 90 O ASP C 92 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG A 84 O GLN C 91 1655 1.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 27 126.84 56.25 REMARK 500 GLU A 50 147.07 -171.07 REMARK 500 GLN A 91 5.12 -67.74 REMARK 500 ASP A 104 -157.04 -133.87 REMARK 500 ASN B 25 -129.72 -68.48 REMARK 500 GLN B 89 -71.43 -80.50 REMARK 500 GLN B 91 -14.30 75.65 REMARK 500 ASP B 92 92.78 -10.27 REMARK 500 ASP B 104 -157.54 -133.79 REMARK 500 PRO C 24 -179.89 -52.23 REMARK 500 ASN C 25 -21.80 77.62 REMARK 500 ASP C 104 -156.55 -134.20 REMARK 500 GLN D 91 2.72 -67.02 REMARK 500 GLN D 94 -88.40 88.09 REMARK 500 ASP D 95 108.65 131.00 REMARK 500 ASP D 104 -157.44 -134.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MYC B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MYC D 201 DBREF 5YUN A 1 115 UNP P40947 SSB_PSEAE 1 115 DBREF 5YUN B 1 115 UNP P40947 SSB_PSEAE 1 115 DBREF 5YUN C 1 115 UNP P40947 SSB_PSEAE 1 115 DBREF 5YUN D 1 115 UNP P40947 SSB_PSEAE 1 115 SEQADV 5YUN HIS A 116 UNP P40947 EXPRESSION TAG SEQADV 5YUN HIS A 117 UNP P40947 EXPRESSION TAG SEQADV 5YUN HIS A 118 UNP P40947 EXPRESSION TAG SEQADV 5YUN HIS A 119 UNP P40947 EXPRESSION TAG SEQADV 5YUN HIS A 120 UNP P40947 EXPRESSION TAG SEQADV 5YUN HIS A 121 UNP P40947 EXPRESSION TAG SEQADV 5YUN HIS B 116 UNP P40947 EXPRESSION TAG SEQADV 5YUN HIS B 117 UNP P40947 EXPRESSION TAG SEQADV 5YUN HIS B 118 UNP P40947 EXPRESSION TAG SEQADV 5YUN HIS B 119 UNP P40947 EXPRESSION TAG SEQADV 5YUN HIS B 120 UNP P40947 EXPRESSION TAG SEQADV 5YUN HIS B 121 UNP P40947 EXPRESSION TAG SEQADV 5YUN HIS C 116 UNP P40947 EXPRESSION TAG SEQADV 5YUN HIS C 117 UNP P40947 EXPRESSION TAG SEQADV 5YUN HIS C 118 UNP P40947 EXPRESSION TAG SEQADV 5YUN HIS C 119 UNP P40947 EXPRESSION TAG SEQADV 5YUN HIS C 120 UNP P40947 EXPRESSION TAG SEQADV 5YUN HIS C 121 UNP P40947 EXPRESSION TAG SEQADV 5YUN HIS D 116 UNP P40947 EXPRESSION TAG SEQADV 5YUN HIS D 117 UNP P40947 EXPRESSION TAG SEQADV 5YUN HIS D 118 UNP P40947 EXPRESSION TAG SEQADV 5YUN HIS D 119 UNP P40947 EXPRESSION TAG SEQADV 5YUN HIS D 120 UNP P40947 EXPRESSION TAG SEQADV 5YUN HIS D 121 UNP P40947 EXPRESSION TAG SEQRES 1 A 121 MET ALA ARG GLY VAL ASN LYS VAL ILE LEU VAL GLY ASN SEQRES 2 A 121 VAL GLY GLY ASP PRO GLU THR ARG TYR MET PRO ASN GLY SEQRES 3 A 121 ASN ALA VAL THR ASN ILE THR LEU ALA THR SER GLU SER SEQRES 4 A 121 TRP LYS ASP LYS GLN THR GLY GLN GLN GLN GLU ARG THR SEQRES 5 A 121 GLU TRP HIS ARG VAL VAL PHE PHE GLY ARG LEU ALA GLU SEQRES 6 A 121 ILE ALA GLY GLU TYR LEU ARG LYS GLY SER GLN VAL TYR SEQRES 7 A 121 VAL GLU GLY SER LEU ARG THR ARG LYS TRP GLN GLY GLN SEQRES 8 A 121 ASP GLY GLN ASP ARG TYR THR THR GLU ILE VAL VAL ASP SEQRES 9 A 121 ILE ASN GLY ASN MET GLN LEU LEU GLY GLY ARG HIS HIS SEQRES 10 A 121 HIS HIS HIS HIS SEQRES 1 B 121 MET ALA ARG GLY VAL ASN LYS VAL ILE LEU VAL GLY ASN SEQRES 2 B 121 VAL GLY GLY ASP PRO GLU THR ARG TYR MET PRO ASN GLY SEQRES 3 B 121 ASN ALA VAL THR ASN ILE THR LEU ALA THR SER GLU SER SEQRES 4 B 121 TRP LYS ASP LYS GLN THR GLY GLN GLN GLN GLU ARG THR SEQRES 5 B 121 GLU TRP HIS ARG VAL VAL PHE PHE GLY ARG LEU ALA GLU SEQRES 6 B 121 ILE ALA GLY GLU TYR LEU ARG LYS GLY SER GLN VAL TYR SEQRES 7 B 121 VAL GLU GLY SER LEU ARG THR ARG LYS TRP GLN GLY GLN SEQRES 8 B 121 ASP GLY GLN ASP ARG TYR THR THR GLU ILE VAL VAL ASP SEQRES 9 B 121 ILE ASN GLY ASN MET GLN LEU LEU GLY GLY ARG HIS HIS SEQRES 10 B 121 HIS HIS HIS HIS SEQRES 1 C 121 MET ALA ARG GLY VAL ASN LYS VAL ILE LEU VAL GLY ASN SEQRES 2 C 121 VAL GLY GLY ASP PRO GLU THR ARG TYR MET PRO ASN GLY SEQRES 3 C 121 ASN ALA VAL THR ASN ILE THR LEU ALA THR SER GLU SER SEQRES 4 C 121 TRP LYS ASP LYS GLN THR GLY GLN GLN GLN GLU ARG THR SEQRES 5 C 121 GLU TRP HIS ARG VAL VAL PHE PHE GLY ARG LEU ALA GLU SEQRES 6 C 121 ILE ALA GLY GLU TYR LEU ARG LYS GLY SER GLN VAL TYR SEQRES 7 C 121 VAL GLU GLY SER LEU ARG THR ARG LYS TRP GLN GLY GLN SEQRES 8 C 121 ASP GLY GLN ASP ARG TYR THR THR GLU ILE VAL VAL ASP SEQRES 9 C 121 ILE ASN GLY ASN MET GLN LEU LEU GLY GLY ARG HIS HIS SEQRES 10 C 121 HIS HIS HIS HIS SEQRES 1 D 121 MET ALA ARG GLY VAL ASN LYS VAL ILE LEU VAL GLY ASN SEQRES 2 D 121 VAL GLY GLY ASP PRO GLU THR ARG TYR MET PRO ASN GLY SEQRES 3 D 121 ASN ALA VAL THR ASN ILE THR LEU ALA THR SER GLU SER SEQRES 4 D 121 TRP LYS ASP LYS GLN THR GLY GLN GLN GLN GLU ARG THR SEQRES 5 D 121 GLU TRP HIS ARG VAL VAL PHE PHE GLY ARG LEU ALA GLU SEQRES 6 D 121 ILE ALA GLY GLU TYR LEU ARG LYS GLY SER GLN VAL TYR SEQRES 7 D 121 VAL GLU GLY SER LEU ARG THR ARG LYS TRP GLN GLY GLN SEQRES 8 D 121 ASP GLY GLN ASP ARG TYR THR THR GLU ILE VAL VAL ASP SEQRES 9 D 121 ILE ASN GLY ASN MET GLN LEU LEU GLY GLY ARG HIS HIS SEQRES 10 D 121 HIS HIS HIS HIS HET MYC B 201 23 HET MYC D 201 23 HETNAM MYC 3,5,7-TRIHYDROXY-2-(3,4,5-TRIHYDROXYPHENYL)-4H-CHROMEN- HETNAM 2 MYC 4-ONE HETSYN MYC 2-(3,4,5-TRIHYDROXYPHENYL)-3,5,7-TRIHYDROXY-4H-1- HETSYN 2 MYC BENZOPYRAN-4-ONE; 3,3',4',5,5',7-HEXAHYDROXYFLAVONE; HETSYN 3 MYC MYRICETIN; CANNABISCETIN FORMUL 5 MYC 2(C15 H10 O8) FORMUL 7 HOH *18(H2 O) HELIX 1 AA1 GLY A 61 LEU A 71 1 11 HELIX 2 AA2 GLY B 61 LEU B 71 1 11 HELIX 3 AA3 PRO C 24 GLY C 26 5 3 HELIX 4 AA4 GLY C 61 LEU C 71 1 11 HELIX 5 AA5 GLY D 61 LEU D 71 1 11 SHEET 1 AA1 6 ASN B 108 LEU B 111 0 SHEET 2 AA1 6 GLN B 76 TRP B 88 -1 N GLU B 80 O ASN B 108 SHEET 3 AA1 6 VAL B 5 VAL B 14 -1 N LEU B 10 O VAL B 79 SHEET 4 AA1 6 VAL A 5 VAL A 14 -1 N ILE A 9 O LYS B 7 SHEET 5 AA1 6 GLY A 26 GLU A 38 -1 O ALA A 35 N ASN A 13 SHEET 6 AA1 6 GLU A 19 MET A 23 -1 N ARG A 21 O VAL A 29 SHEET 1 AA2 6 GLU A 19 MET A 23 0 SHEET 2 AA2 6 GLY A 26 GLU A 38 -1 O VAL A 29 N ARG A 21 SHEET 3 AA2 6 ARG A 51 PHE A 60 -1 O GLU A 53 N THR A 36 SHEET 4 AA2 6 ASP A 95 VAL A 103 1 O VAL A 103 N VAL A 58 SHEET 5 AA2 6 GLN A 76 GLN A 89 -1 N ARG A 84 O GLU A 100 SHEET 6 AA2 6 ASN A 108 LEU A 111 -1 O ASN A 108 N GLU A 80 SHEET 1 AA3 6 ASN A 108 LEU A 111 0 SHEET 2 AA3 6 GLN A 76 GLN A 89 -1 N GLU A 80 O ASN A 108 SHEET 3 AA3 6 VAL A 5 VAL A 14 -1 N LEU A 10 O VAL A 79 SHEET 4 AA3 6 VAL B 5 VAL B 14 -1 O LYS B 7 N ILE A 9 SHEET 5 AA3 6 ALA B 28 GLU B 38 -1 O ALA B 35 N ASN B 13 SHEET 6 AA3 6 GLU B 19 TYR B 22 -1 N ARG B 21 O VAL B 29 SHEET 1 AA4 6 GLU B 19 TYR B 22 0 SHEET 2 AA4 6 ALA B 28 GLU B 38 -1 O VAL B 29 N ARG B 21 SHEET 3 AA4 6 ARG B 51 PHE B 60 -1 O GLU B 53 N THR B 36 SHEET 4 AA4 6 ARG B 96 VAL B 103 1 O VAL B 103 N VAL B 58 SHEET 5 AA4 6 GLN B 76 TRP B 88 -1 N TRP B 88 O ARG B 96 SHEET 6 AA4 6 ASN B 108 LEU B 111 -1 O ASN B 108 N GLU B 80 SHEET 1 AA5 9 ASN D 108 LEU D 111 0 SHEET 2 AA5 9 GLN D 76 GLY D 90 -1 N GLU D 80 O ASN D 108 SHEET 3 AA5 9 VAL D 5 VAL D 14 -1 N LEU D 10 O VAL D 79 SHEET 4 AA5 9 VAL C 5 TYR C 22 -1 N ILE C 9 O LYS D 7 SHEET 5 AA5 9 ALA C 28 GLU C 38 -1 O ALA C 35 N ASN C 13 SHEET 6 AA5 9 ARG C 51 PHE C 60 -1 O GLU C 53 N THR C 36 SHEET 7 AA5 9 ASP C 95 VAL C 103 1 O VAL C 103 N VAL C 58 SHEET 8 AA5 9 GLN C 76 GLN C 89 -1 N ARG C 84 O GLU C 100 SHEET 9 AA5 9 ASN C 108 LEU C 111 -1 O ASN C 108 N GLU C 80 SHEET 1 AA6 6 ASN C 108 LEU C 111 0 SHEET 2 AA6 6 GLN C 76 GLN C 89 -1 N GLU C 80 O ASN C 108 SHEET 3 AA6 6 VAL C 5 TYR C 22 -1 N LEU C 10 O VAL C 79 SHEET 4 AA6 6 VAL D 5 VAL D 14 -1 O LYS D 7 N ILE C 9 SHEET 5 AA6 6 ALA D 28 GLU D 38 -1 O ALA D 35 N ASN D 13 SHEET 6 AA6 6 GLU D 19 TYR D 22 -1 N ARG D 21 O VAL D 29 SHEET 1 AA7 6 GLU D 19 TYR D 22 0 SHEET 2 AA7 6 ALA D 28 GLU D 38 -1 O VAL D 29 N ARG D 21 SHEET 3 AA7 6 ARG D 51 PHE D 60 -1 O GLU D 53 N THR D 36 SHEET 4 AA7 6 GLY D 93 VAL D 103 1 O VAL D 103 N VAL D 58 SHEET 5 AA7 6 GLN D 76 GLY D 90 -1 N TRP D 88 O ARG D 96 SHEET 6 AA7 6 ASN D 108 LEU D 111 -1 O ASN D 108 N GLU D 80 CISPEP 1 ASN A 25 GLY A 26 0 -4.85 CISPEP 2 ASP B 92 GLY B 93 0 -4.64 CISPEP 3 ASN D 25 GLY D 26 0 -13.40 SITE 1 AC1 8 ARG B 62 GLU B 80 ILE B 105 ASN B 106 SITE 2 AC1 8 GLY B 107 GLU C 80 ASN C 106 GLY C 107 SITE 1 AC2 9 LYS A 7 GLU A 80 ILE A 105 ASN A 106 SITE 2 AC2 9 GLY A 107 ASN A 108 GLU D 80 ILE D 105 SITE 3 AC2 9 ASN D 106 CRYST1 60.110 60.110 130.868 90.00 90.00 120.00 P 31 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016636 0.009605 0.000000 0.00000 SCALE2 0.000000 0.019210 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007641 0.00000